Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:47:36 (1738944): wrapper (7.7.26015): starting
15:47:36 (1738944): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 15:47:36] Arguments: --nthreads 12
[2025-07-26 15:47:36] Threads: 12
[2025-07-26 15:47:36] Checking for CVMFS
[2025-07-26 15:47:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:47:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:47:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:47:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:47:36] 2.12.6.0 3046116 17364 305288 148787 0 111 28352255 32935936 7956 16776704 1 55502744 99.758 53674164 27172 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 15:47:36] CVMFS is ok
[2025-07-26 15:47:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:47:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:47:36] Further information can be found at the LHC@home message board.
[2025-07-26 15:47:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:47:36] Checking for apptainer binary...
[2025-07-26 15:47:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:47:36] Running /usr/bin/apptainer --version
[2025-07-26 15:47:36] apptainer version 1.4.1-1.el9
[2025-07-26 15:47:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:47:36] c6-1-26-4.aglt2.org
[2025-07-26 15:47:36] apptainer works
[2025-07-26 15:47:37] Set ATHENA_PROC_NUMBER=12
[2025-07-26 15:47:37] Set ATHENA_CORE_NUMBER=12
[2025-07-26 15:47:37] Starting ATLAS job with PandaID=6745227303
[2025-07-26 15:47:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:52:55]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:52:55]  is_tar=False
[2025-07-26 16:52:55]  lfn=log.45743349._038306.job.log.tgz.1
[2025-07-26 16:52:55]  mtime=0
[2025-07-26 16:52:55]  protocol_id=None
[2025-07-26 16:52:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 16:52:55]  replicas=None
[2025-07-26 16:52:55]  scope=mc23_13p6TeV
[2025-07-26 16:52:55]  status=None
[2025-07-26 16:52:55]  status_code=0
[2025-07-26 16:52:55]  storage_token=
[2025-07-26 16:52:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745227303/log.45743349._038306.job.log.tgz.1
[2025-07-26 16:52:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/80/log.45743349._038306.job.log.tgz.1
[2025-07-26 16:52:55]  workdir=None
[2025-07-26 16:52:55] ]
[2025-07-26 16:52:55] 2025-07-26 20:52:16,571 | INFO     | transferring file log.45743349._038306.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745227303/log.45743349._038306.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 16:52:55] 2025-07-26 20:52:16,571 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745227303/log.45743349._038306.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._038306.job
[2025-07-26 16:52:55] 2025-07-26 20:52:16,589 | INFO     | adding to output.list: log.45743349._038306.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/80/log.45743349._038306.job.log.tg
[2025-07-26 16:52:55] 2025-07-26 20:52:16,591 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:52:55] 2025-07-26 20:52:16,591 | INFO     | summary of transferred files:
[2025-07-26 16:52:55] 2025-07-26 20:52:16,591 | INFO     |  -- lfn=log.45743349._038306.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:52:55] 2025-07-26 20:52:16,592 | INFO     | stage-out finished correctly
[2025-07-26 16:52:55] 2025-07-26 20:52:16,677 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:52:55] 2025-07-26 20:52:16,760 | INFO     | number of running child processes to parent process 1749690: 1
[2025-07-26 16:52:55] 2025-07-26 20:52:16,760 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:52:55] 2025-07-26 20:52:18,222 | INFO     | job 6745227303 has state=finished
[2025-07-26 16:52:55] 2025-07-26 20:52:18,222 | INFO     | preparing for final server update for job 6745227303 in state='finished'
[2025-07-26 16:52:55] 2025-07-26 20:52:18,222 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:52:55] 2025-07-26 20:52:18,223 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:52:55] 2025-07-26 20:52:18,223 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:52:55] 2025-07-26 20:52:18,223 | INFO     | job 6745227303 has finished - writing final server update
[2025-07-26 16:52:55] 2025-07-26 20:52:18,223 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:52:55] 2025-07-26 20:52:18,224 | INFO     | executing command: lscpu
[2025-07-26 16:52:55] 2025-07-26 20:52:18,278 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:52:55] 2025-07-26 20:52:19,263 | INFO     | monitor loop #290: job 0:6745227303 is in state 'finished'
[2025-07-26 16:52:55] 2025-07-26 20:52:19,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:52:55] 2025-07-26 20:52:21,766 | INFO     | monitor loop #291: job 0:6745227303 is in state 'finished'
[2025-07-26 16:52:55] 2025-07-26 20:52:21,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,434 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 16:52:55] 2025-07-26 20:52:22,438 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2779.853482142857
[2025-07-26 16:52:55] 2025-07-26 20:52:22,446 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745227303/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,447 | INFO     | extracted standard info from prmon json
[2025-07-26 16:52:55] 2025-07-26 20:52:22,447 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:52:55] 2025-07-26 20:52:22,447 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:52:55] 2025-07-26 20:52:22,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:52:55] 2025-07-26 20:52:22,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:52:55] 2025-07-26 20:52:22,449 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:52:55] 2025-07-26 20:52:22,450 | INFO     | sum of square deviations: 54438230.0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,450 | INFO     | sum of deviations: -8188166426.499999
[2025-07-26 16:52:55] 2025-07-26 20:52:22,450 | INFO     | mean x: 1753561280.5
[2025-07-26 16:52:55] 2025-07-26 20:52:22,450 | INFO     | mean y: 2572878.4464285714
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | -- intersect: 263759340940.16425
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | intersect: 263759340940.16425
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | chi2: 0.09903586125778768
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | -- intersect: 263759340940.16425
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | current memory leak: -150.41 B/s (using 56 data points, chi2=0.10)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,451 | INFO     | could have reported an average CPU frequency of 2839 MHz (6 samples)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | ..............................
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . Timing measurements:
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . get job = 0 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . initial setup = 3 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . payload setup = 7 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . stage-in = 0 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . payload execution = 3837 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . stage-out = 1 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | . log creation = 0 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,452 | INFO     | ..............................
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | 
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | job summary report
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | --------------------------------------------------
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | PanDA job id: 6745227303
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | task id: 45743349
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | errors: (none)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | pilot state: finished 
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | transexitcode: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,539 | INFO     | exeerrorcode: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | exeerrordiag: 
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | exitcode: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | exitmsg: OK
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | cpuconsumptiontime: 41567 s
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | nevents: 400
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | neventsw: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | pid: 1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | pgrp: 1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | corecount: 12
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | event service: False
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | sizes: {0: 2396646, 1: 2397502, 6: 2397764, 12: 2397792, 3849: 2423547, 3851: 2432729, 3857: 2432867}
[2025-07-26 16:52:55] 2025-07-26 20:52:22,540 | INFO     | --------------------------------------------------
[2025-07-26 16:52:55] 2025-07-26 20:52:22,541 | INFO     | 
[2025-07-26 16:52:55] 2025-07-26 20:52:22,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 16:52:55] 2025-07-26 20:52:22,560 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | job 6745227303 has completed (purged errors)
[2025-07-26 16:52:55] 2025-07-26 20:52:22,562 | INFO     | overall cleanup function is called
[2025-07-26 16:52:55] 2025-07-26 20:52:23,569 | INFO     | --- collectZombieJob: --- 10, [1749690]
[2025-07-26 16:52:55] 2025-07-26 20:52:23,570 | INFO     | zombie collector waiting for pid 1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:23,570 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:52:55] 2025-07-26 20:52:23,570 | INFO     | collected zombie processes
[2025-07-26 16:52:55] 2025-07-26 20:52:23,570 | INFO     | will attempt to kill all subprocesses of pid=1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:23,813 | INFO     | process IDs to be killed: [1749690] (in reverse order)
[2025-07-26 16:52:55] 2025-07-26 20:52:23,896 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:52:55] 2025-07-26 20:52:23,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:52:55] 2025-07-26 20:52:23,907 | INFO     | did not find any defunct processes belonging to 1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:23,917 | INFO     | did not find any defunct processes belonging to 1749690
[2025-07-26 16:52:55] 2025-07-26 20:52:23,917 | INFO     | ready for new job
[2025-07-26 16:52:55] 2025-07-26 20:52:23,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:52:55] 2025-07-26 20:52:23,919 | INFO     | ***************************************
[2025-07-26 16:52:55] 2025-07-26 20:52:23,919 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:52:55] 2025-07-26 20:52:23,919 | INFO     | ***************************************
[2025-07-26 16:52:55] 2025-07-26 20:52:23,919 | INFO     | 
[2025-07-26 16:52:55] 2025-07-26 20:52:23,935 | INFO     | architecture information:
[2025-07-26 16:52:55] 2025-07-26 20:52:23,936 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:52:55] 2025-07-26 20:52:23,949 | INFO     | cat /etc/os-release:
[2025-07-26 16:52:55] NAME="CentOS Linux"
[2025-07-26 16:52:55] VERSION="7 (Core)"
[2025-07-26 16:52:55] ID="centos"
[2025-07-26 16:52:55] ID_LIKE="rhel fedora"
[2025-07-26 16:52:55] VERSION_ID="7"
[2025-07-26 16:52:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:52:55] ANSI_COLOR="0;31"
[2025-07-26 16:52:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:52:55] HOME_URL="https://www.centos.org/"
[2025-07-26 16:52:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:52:55] 
[2025-07-26 16:52:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:52:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:52:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:52:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:52:55] 
[2025-07-26 16:52:55] 2025-07-26 20:52:23,949 | INFO     | ***************************************
[2025-07-26 16:52:55] 2025-07-26 20:52:24,452 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 16:52:55] 2025-07-26 20:52:24,469 | INFO     | sufficient remaining disk space (76518785024 B)
[2025-07-26 16:52:55] 2025-07-26 20:52:24,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:52:55] 2025-07-26 20:52:24,469 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:52:55] 2025-07-26 20:52:24,469 | INFO     | update_server=False
[2025-07-26 16:52:55] 2025-07-26 20:52:24,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:52:55] 2025-07-26 20:52:24,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:52:55] 2025-07-26 20:52:24,488 | INFO     | all job control threads have been joined
[2025-07-26 16:52:55] 2025-07-26 20:52:24,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:52:55] 2025-07-26 20:52:24,900 | INFO     | all payload control threads have been joined
[2025-07-26 16:52:55] 2025-07-26 20:52:25,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:52:55] 2025-07-26 20:52:25,274 | INFO     | all data control threads have been joined
[2025-07-26 16:52:55] 2025-07-26 20:52:25,274 | INFO     | aborting loop
[2025-07-26 16:52:55] 2025-07-26 20:52:25,475 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:25,475 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:25,494 | INFO     | [job] control thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:25,618 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:25,905 | INFO     | [payload] control thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:25,911 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,019 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,044 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,279 | INFO     | [data] control thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,280 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,620 | INFO     | [job] validate thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,689 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,715 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:26,847 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:27,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:52:55] 2025-07-26 20:52:31,271 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:52:55] 2025-07-26 20:52:32,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310303442752)>', '<ExcThread(monitor, started 140309535127296)>']
[2025-07-26 16:52:55] 2025-07-26 20:52:37,973 | INFO     | all workflow threads have been joined
[2025-07-26 16:52:55] 2025-07-26 20:52:37,974 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:52:55] 2025-07-26 20:52:37,974 | INFO     | traces error code: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:37,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:52:55] 2025-07-26 20:52:54,760 | INFO     | PID=1742521 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | INFO     | .. there are 11 such processes running
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:52:55] 2025-07-26 20:52:54,761 | INFO     | [monitor] control thread has ended
[2025-07-26 16:52:55] 2025-07-26 20:52:54,890 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:52:55] 2025-07-26 20:52:54,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:52:55] 2025-07-26 20:52:54,896 [wrapper] pilotpid: 1742521
[2025-07-26 16:52:55] 2025-07-26 20:52:54,899 [wrapper] Pilot exit status: 0
[2025-07-26 16:52:55] 2025-07-26 20:52:54,910 [wrapper] pandaids: 6745227303
[2025-07-26 16:52:55] 2025-07-26 20:52:54,972 [wrapper] cleanup supervisor_pilot 1921739 1742522
[2025-07-26 16:52:55] 2025-07-26 20:52:54,976 [wrapper] Test setup, not cleaning
[2025-07-26 16:52:55] 2025-07-26 20:52:54,978 [wrapper] apfmon messages muted
[2025-07-26 16:52:55] 2025-07-26 20:52:54,983 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:52:55] 2025-07-26 20:52:54,986 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:52:55]  *** Error codes and diagnostics ***
[2025-07-26 16:52:55]     "exeErrorCode": 0,
[2025-07-26 16:52:55]     "exeErrorDiag": "",
[2025-07-26 16:52:55]     "pilotErrorCode": 0,
[2025-07-26 16:52:55]     "pilotErrorDiag": "",
[2025-07-26 16:52:55]  *** Listing of results directory ***
[2025-07-26 16:52:55] total 345796
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 08:44 pilot3.tar.gz
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 09:05 queuedata.json
[2025-07-26 16:52:55] -rwx------. 1 boincer umatlas     36292 Jul 26 09:06 runpilot2-wrapper.sh
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas       100 Jul 26 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:52:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 15:47 run_atlas
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas       105 Jul 26 15:47 job.xml
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas 146092280 Jul 26 15:47 EVNT.45743347._002194.pool.root.1
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:47 start_atlas.sh
[2025-07-26 16:52:55] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 15:47 shared
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 15:47 input.tar.gz
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas         0 Jul 26 15:47 boinc_lockfile
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 15:47 pandaJob.out
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas    980125 Jul 26 15:47 agis_schedconf.cvmfs.json
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:47 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:52:55] drwx------. 4 boincer umatlas      4096 Jul 26 15:47 pilot3
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas      6840 Jul 26 16:46 init_data.xml
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas 202623065 Jul 26 16:51 HITS.45743349._038306.pool.root.1
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas       529 Jul 26 16:51 boinc_task_state.xml
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas        95 Jul 26 16:51 pilot_heartbeat.json
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas      1038 Jul 26 16:52 memory_monitor_summary.json
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas    353699 Jul 26 16:52 log.45743349._038306.job.log.tgz.1
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas      7827 Jul 26 16:52 heartbeat.json
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 16:52 boinc_mmap_file
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas        27 Jul 26 16:52 wrapper_checkpoint.txt
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas       823 Jul 26 16:52 pilotlog.txt
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas    397289 Jul 26 16:52 log.45743349._038306.job.log.1
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas       357 Jul 26 16:52 output.list
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas       620 Jul 26 16:52 runtime_log
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas    768000 Jul 26 16:52 result.tar.gz
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 16:52 runtime_log.err
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas       653 Jul 26 16:52 Ps6NDmkmtz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiBSLDm6xk0bm.diag
[2025-07-26 16:52:55] -rw-r--r--. 1 boincer umatlas     21564 Jul 26 16:52 stderr.txt
[2025-07-26 16:52:55] HITS file was successfully produced:
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas 202623065 Jul 26 16:51 shared/HITS.pool.root.1
[2025-07-26 16:52:55]  *** Contents of shared directory: ***
[2025-07-26 16:52:55] total 341856
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas 146092280 Jul 26 15:47 ATLAS.root_0
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:47 start_atlas.sh
[2025-07-26 16:52:55] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 15:47 input.tar.gz
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas 202623065 Jul 26 16:51 HITS.pool.root.1
[2025-07-26 16:52:55] -rw-------. 1 boincer umatlas    768000 Jul 26 16:52 result.tar.gz
16:52:56 (1738944): run_atlas exited; CPU time 41648.487869
16:52:56 (1738944): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN