Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:07:14 (578014): wrapper (7.7.26015): starting
14:07:14 (578014): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 14:07:14] Arguments: --nthreads 8
[2025-07-26 14:07:14] Threads: 8
[2025-07-26 14:07:14] Checking for CVMFS
[2025-07-26 14:07:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:07:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:07:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:07:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:07:15] 2.13.1.0 1173468 11835 209228 148785 1 105 35745588 40960001 13229 16776704 0 47692001 99.867 24011346 40886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 14:07:15] CVMFS is ok
[2025-07-26 14:07:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 14:07:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 14:07:15] Further information can be found at the LHC@home message board.
[2025-07-26 14:07:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:07:15] Checking for apptainer binary...
[2025-07-26 14:07:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:07:15] Running /usr/bin/apptainer --version
[2025-07-26 14:07:15] apptainer version 1.4.1-1.el9
[2025-07-26 14:07:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:07:15] c-212-20.aglt2.org
[2025-07-26 14:07:15] apptainer works
[2025-07-26 14:07:15] Set ATHENA_PROC_NUMBER=8
[2025-07-26 14:07:15] Set ATHENA_CORE_NUMBER=8
[2025-07-26 14:07:15] Starting ATLAS job with PandaID=6745186050
[2025-07-26 14:07:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:28:08]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:28:08]  lfn=log.45743349._037976.job.log.tgz.1
[2025-07-26 15:28:08]  mtime=0
[2025-07-26 15:28:08]  protocol_id=None
[2025-07-26 15:28:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 15:28:08]  replicas=None
[2025-07-26 15:28:08]  scope=mc23_13p6TeV
[2025-07-26 15:28:08]  status=None
[2025-07-26 15:28:08]  status_code=0
[2025-07-26 15:28:08]  storage_token=
[2025-07-26 15:28:08]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745186050/log.45743349._037976.job.log.tgz.1
[2025-07-26 15:28:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2d/log.45743349._037976.job.log.tgz.1
[2025-07-26 15:28:08]  workdir=None
[2025-07-26 15:28:08] ]
[2025-07-26 15:28:08] 2025-07-26 19:27:28,944 | INFO     | transferring file log.45743349._037976.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745186050/log.45743349._037976.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 15:28:08] 2025-07-26 19:27:28,944 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745186050/log.45743349._037976.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._037976.job
[2025-07-26 15:28:08] 2025-07-26 19:27:28,963 | INFO     | adding to output.list: log.45743349._037976.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2d/log.45743349._037976.job.log.tg
[2025-07-26 15:28:08] 2025-07-26 19:27:28,964 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:28:08] 2025-07-26 19:27:28,964 | INFO     | summary of transferred files:
[2025-07-26 15:28:08] 2025-07-26 19:27:28,964 | INFO     |  -- lfn=log.45743349._037976.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:28:08] 2025-07-26 19:27:28,965 | INFO     | stage-out finished correctly
[2025-07-26 15:28:08] 2025-07-26 19:27:29,042 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:28:08] 2025-07-26 19:27:29,568 | INFO     | PID=581630 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 15:28:08] 2025-07-26 19:27:29,568 | INFO     | .. there are 15 such processes running
[2025-07-26 15:28:08] 2025-07-26 19:27:32,076 | INFO     | job 6745186050 has state=finished
[2025-07-26 15:28:08] 2025-07-26 19:27:32,076 | INFO     | preparing for final server update for job 6745186050 in state='finished'
[2025-07-26 15:28:08] 2025-07-26 19:27:32,078 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:28:08] 2025-07-26 19:27:32,078 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:28:08] 2025-07-26 19:27:32,078 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:28:08] 2025-07-26 19:27:32,078 | INFO     | job 6745186050 has finished - writing final server update
[2025-07-26 15:28:08] 2025-07-26 19:27:32,078 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:28:08] 2025-07-26 19:27:32,079 | INFO     | executing command: lscpu
[2025-07-26 15:28:08] 2025-07-26 19:27:32,150 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:28:08] 2025-07-26 19:27:35,328 | WARNING  | process 588026 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 15:28:08] 2025-07-26 19:27:35,328 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745186050/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:28:08] 2025-07-26 19:27:35,619 | INFO     | number of running child processes to parent process 588026: 1
[2025-07-26 15:28:08] 2025-07-26 19:27:35,619 | INFO     | maximum number of monitored processes: 6
[2025-07-26 15:28:08] 2025-07-26 19:27:36,360 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 15:28:08] 2025-07-26 19:27:36,372 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3188.902624999999
[2025-07-26 15:28:08] 2025-07-26 19:27:36,386 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745186050/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,386 | INFO     | extracted standard info from prmon json
[2025-07-26 15:28:08] 2025-07-26 19:27:36,387 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:28:08] 2025-07-26 19:27:36,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:28:08] 2025-07-26 19:27:36,387 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:28:08] 2025-07-26 19:27:36,387 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:28:08] 2025-07-26 19:27:36,389 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:28:08] 2025-07-26 19:27:36,389 | INFO     | sum of square deviations: 115715658.0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,389 | INFO     | sum of deviations: 1719835098.0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,389 | INFO     | mean x: 1753555751.5
[2025-07-26 15:28:08] 2025-07-26 19:27:36,389 | INFO     | mean y: 2524080.4166666665
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | -- intersect: -26059866955.1117
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | intersect: -26059866955.1117
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | chi2: 0.0010500661466865374
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | -- intersect: -26059866955.1117
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | current memory leak: 14.86 B/s (using 72 data points, chi2=0.00)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | could have reported an average CPU frequency of 3096 MHz (6 samples)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | ..............................
[2025-07-26 15:28:08] 2025-07-26 19:27:36,390 | INFO     | . Timing measurements:
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . get job = 0 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . initial setup = 2 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . payload setup = 9 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . stage-in = 0 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . payload execution = 4770 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . stage-out = 0 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | . log creation = 0 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,391 | INFO     | ..............................
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | 
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | job summary report
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | --------------------------------------------------
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | PanDA job id: 6745186050
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | task id: 45743349
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | errors: (none)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | pilot state: finished 
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | transexitcode: 0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,468 | INFO     | exeerrorcode: 0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | exeerrordiag: 
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | exitcode: 0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | exitmsg: OK
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | cpuconsumptiontime: 35438 s
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | nevents: 400
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | neventsw: 0
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | pid: 588026
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | pgrp: 588026
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | corecount: 8
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | event service: False
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | sizes: {0: 2397475, 1: 2397475, 6: 2397765, 11: 2397793, 4782: 2423905, 4783: 2433087, 4790: 2433225}
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | --------------------------------------------------
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | 
[2025-07-26 15:28:08] 2025-07-26 19:27:36,469 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 15:28:08] 2025-07-26 19:27:36,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,491 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:28:08] 2025-07-26 19:27:36,492 | INFO     | job 6745186050 has completed (purged errors)
[2025-07-26 15:28:08] 2025-07-26 19:27:36,492 | INFO     | overall cleanup function is called
[2025-07-26 15:28:08] 2025-07-26 19:27:37,500 | INFO     | --- collectZombieJob: --- 10, [588026]
[2025-07-26 15:28:08] 2025-07-26 19:27:37,500 | INFO     | zombie collector waiting for pid 588026
[2025-07-26 15:28:08] 2025-07-26 19:27:37,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:28:08] 2025-07-26 19:27:37,500 | INFO     | collected zombie processes
[2025-07-26 15:28:08] 2025-07-26 19:27:37,500 | INFO     | will attempt to kill all subprocesses of pid=588026
[2025-07-26 15:28:08] 2025-07-26 19:27:37,829 | INFO     | process IDs to be killed: [588026] (in reverse order)
[2025-07-26 15:28:08] 2025-07-26 19:27:37,921 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:28:08] 2025-07-26 19:27:37,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:28:08] 2025-07-26 19:27:37,935 | INFO     | did not find any defunct processes belonging to 588026
[2025-07-26 15:28:08] 2025-07-26 19:27:37,947 | INFO     | did not find any defunct processes belonging to 588026
[2025-07-26 15:28:08] 2025-07-26 19:27:37,948 | INFO     | ready for new job
[2025-07-26 15:28:08] 2025-07-26 19:27:37,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:28:08] 2025-07-26 19:27:37,949 | INFO     | ***************************************
[2025-07-26 15:28:08] 2025-07-26 19:27:37,949 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:28:08] 2025-07-26 19:27:37,949 | INFO     | ***************************************
[2025-07-26 15:28:08] 2025-07-26 19:27:37,949 | INFO     | 
[2025-07-26 15:28:08] 2025-07-26 19:27:37,954 | INFO     | architecture information:
[2025-07-26 15:28:08] 2025-07-26 19:27:37,954 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:28:08] 2025-07-26 19:27:37,973 | INFO     | cat /etc/os-release:
[2025-07-26 15:28:08] NAME="CentOS Linux"
[2025-07-26 15:28:08] VERSION="7 (Core)"
[2025-07-26 15:28:08] ID="centos"
[2025-07-26 15:28:08] ID_LIKE="rhel fedora"
[2025-07-26 15:28:08] VERSION_ID="7"
[2025-07-26 15:28:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:28:08] ANSI_COLOR="0;31"
[2025-07-26 15:28:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:28:08] HOME_URL="https://www.centos.org/"
[2025-07-26 15:28:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:28:08] 
[2025-07-26 15:28:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:28:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:28:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:28:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:28:08] 
[2025-07-26 15:28:08] 2025-07-26 19:27:37,974 | INFO     | ***************************************
[2025-07-26 15:28:08] 2025-07-26 19:27:38,479 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 15:28:08] 2025-07-26 19:27:38,498 | INFO     | sufficient remaining disk space (129034616832 B)
[2025-07-26 15:28:08] 2025-07-26 19:27:38,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:28:08] 2025-07-26 19:27:38,499 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:28:08] 2025-07-26 19:27:38,499 | INFO     | update_server=False
[2025-07-26 15:28:08] 2025-07-26 19:27:38,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:28:08] 2025-07-26 19:27:38,592 | INFO     | all data control threads have been joined
[2025-07-26 15:28:08] 2025-07-26 19:27:38,745 | INFO     | all payload control threads have been joined
[2025-07-26 15:28:08] 2025-07-26 19:27:38,945 | INFO     | all job control threads have been joined
[2025-07-26 15:28:08] 2025-07-26 19:27:39,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:28:08] 2025-07-26 19:27:39,127 | INFO     | aborting loop
[2025-07-26 15:28:08] 2025-07-26 19:27:39,504 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:39,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:28:08] 2025-07-26 19:27:39,598 | INFO     | [data] control thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:39,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:28:08] 2025-07-26 19:27:39,632 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:39,750 | INFO     | [payload] control thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:39,756 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:39,950 | INFO     | [job] control thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,123 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,132 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,244 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,546 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,603 | INFO     | [job] validate thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:40,654 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:41,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:28:08] 2025-07-26 19:27:41,560 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:42,482 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:43,632 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:49,550 | INFO     | job.realtimelogging is not enabled
[2025-07-26 15:28:08] 2025-07-26 19:27:50,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:28:08] 2025-07-26 19:27:50,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099486967616)>', '<ExcThread(monitor, started 140098989442816)>']
[2025-07-26 15:28:08] 2025-07-26 19:27:55,590 | INFO     | all workflow threads have been joined
[2025-07-26 15:28:08] 2025-07-26 19:27:55,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:28:08] 2025-07-26 19:27:55,590 | INFO     | traces error code: 0
[2025-07-26 15:28:08] 2025-07-26 19:27:55,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | INFO     | PID=581630 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | INFO     | .. there are 15 such processes running
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:28:08] 2025-07-26 19:28:08,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:28:08] 2025-07-26 19:28:08,066 | INFO     | [monitor] control thread has ended
[2025-07-26 15:28:08] 2025-07-26 19:28:08,170 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:28:08] 2025-07-26 19:28:08,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:28:08] 2025-07-26 19:28:08,175 [wrapper] pilotpid: 581630
[2025-07-26 15:28:08] 2025-07-26 19:28:08,177 [wrapper] Pilot exit status: 0
[2025-07-26 15:28:08] 2025-07-26 19:28:08,189 [wrapper] pandaids: 6745186050
[2025-07-26 15:28:08] 2025-07-26 19:28:08,271 [wrapper] cleanup supervisor_pilot  737383 581631
[2025-07-26 15:28:08] 2025-07-26 19:28:08,276 [wrapper] Test setup, not cleaning
[2025-07-26 15:28:08] 2025-07-26 19:28:08,281 [wrapper] apfmon messages muted
[2025-07-26 15:28:08] 2025-07-26 19:28:08,286 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:28:08] 2025-07-26 19:28:08,290 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:28:08]  *** Error codes and diagnostics ***
[2025-07-26 15:28:08]     "exeErrorCode": 0,
[2025-07-26 15:28:08]     "exeErrorDiag": "",
[2025-07-26 15:28:08]     "pilotErrorCode": 0,
[2025-07-26 15:28:08]     "pilotErrorDiag": "",
[2025-07-26 15:28:08]  *** Listing of results directory ***
[2025-07-26 15:28:08] total 349400
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 08:28 pilot3.tar.gz
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 08:38 queuedata.json
[2025-07-26 15:28:08] -rwx------. 1 boincer umatlas     36292 Jul 26 08:39 runpilot2-wrapper.sh
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas       100 Jul 26 14:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:28:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 14:07 run_atlas
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas       105 Jul 26 14:07 job.xml
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas 147141443 Jul 26 14:07 EVNT.45743347._002173.pool.root.1
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:07 start_atlas.sh
[2025-07-26 15:28:08] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 14:07 shared
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 14:07 input.tar.gz
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas         0 Jul 26 14:07 boinc_lockfile
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 14:07 pandaJob.out
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas    980125 Jul 26 14:07 agis_schedconf.cvmfs.json
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas   1593052 Jul 26 14:07 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:28:08] drwx------. 4 boincer umatlas      4096 Jul 26 14:07 pilot3
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas 205210879 Jul 26 15:27 HITS.45743349._037976.pool.root.1
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas       530 Jul 26 15:27 boinc_task_state.xml
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas        95 Jul 26 15:27 pilot_heartbeat.json
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas      1029 Jul 26 15:27 memory_monitor_summary.json
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas    305345 Jul 26 15:27 log.45743349._037976.job.log.tgz.1
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas      7765 Jul 26 15:27 heartbeat.json
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas      6944 Jul 26 15:27 init_data.xml
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 15:28 boinc_mmap_file
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas        27 Jul 26 15:28 wrapper_checkpoint.txt
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas       822 Jul 26 15:28 pilotlog.txt
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas    471719 Jul 26 15:28 log.45743349._037976.job.log.1
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas       357 Jul 26 15:28 output.list
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas       620 Jul 26 15:28 runtime_log
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas    798720 Jul 26 15:28 result.tar.gz
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 15:28 runtime_log.err
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas       651 Jul 26 15:28 LPjKDmgMtz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS8RLDmKfoVJo.diag
[2025-07-26 15:28:08] -rw-r--r--. 1 boincer umatlas     21708 Jul 26 15:28 stderr.txt
[2025-07-26 15:28:08] HITS file was successfully produced:
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas 205210879 Jul 26 15:27 shared/HITS.pool.root.1
[2025-07-26 15:28:08]  *** Contents of shared directory: ***
[2025-07-26 15:28:08] total 345432
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas 147141443 Jul 26 14:07 ATLAS.root_0
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:07 start_atlas.sh
[2025-07-26 15:28:08] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 14:07 input.tar.gz
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas 205210879 Jul 26 15:27 HITS.pool.root.1
[2025-07-26 15:28:08] -rw-------. 1 boincer umatlas    798720 Jul 26 15:28 result.tar.gz
15:28:10 (578014): run_atlas exited; CPU time 35550.556367
15:28:10 (578014): called boinc_finish(0)

</stderr_txt>
]]>

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