Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:34 (1740): wrapper (7.7.26015): starting
14:53:34 (1740): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 14:53:34] Arguments: --nthreads 12
[2025-07-26 14:53:34] Threads: 12
[2025-07-26 14:53:34] Checking for CVMFS
[2025-07-26 14:53:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:53:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:53:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:53:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:53:34] 2.10.0.0 31789 206 64760 148787 1 188 11608192 16777217 916 130560 0 722577 99.999 5334 973 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-07-26 14:53:34] CVMFS is ok
[2025-07-26 14:53:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:53:34] Checking for apptainer binary...
[2025-07-26 14:53:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:53:34] Running /usr/bin/apptainer --version
[2025-07-26 14:53:34] apptainer version 1.3.6-150600.4.9.1
[2025-07-26 14:53:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:53:34] boinc-runner
[2025-07-26 14:53:34] apptainer works
[2025-07-26 14:53:34] Set ATHENA_PROC_NUMBER=12
[2025-07-26 14:53:34] Set ATHENA_CORE_NUMBER=12
[2025-07-26 14:53:34] Starting ATLAS job with PandaID=6745186027
[2025-07-26 14:53:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:19:52]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:19:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 15:19:52]  is_altstaged=None
[2025-07-26 15:19:52]  is_tar=False
[2025-07-26 15:19:52]  lfn=log.45743349._037953.job.log.tgz.1
[2025-07-26 15:19:52]  mtime=0
[2025-07-26 15:19:52]  protocol_id=None
[2025-07-26 15:19:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 15:19:52]  replicas=None
[2025-07-26 15:19:52]  scope=mc23_13p6TeV
[2025-07-26 15:19:52]  status=None
[2025-07-26 15:19:52]  status_code=0
[2025-07-26 15:19:52]  storage_token=
[2025-07-26 15:19:52]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6745186027/log.45743349._037953.job.log.tgz.1
[2025-07-26 15:19:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/1d/log.45743349._037953.job.log.tgz.1
[2025-07-26 15:19:52]  workdir=None
[2025-07-26 15:19:52] ]
[2025-07-26 15:19:52] 2025-07-26 20:19:14,311 | INFO     | transferring file log.45743349._037953.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6745186027/log.45743349._037953.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-26 15:19:52] 2025-07-26 20:19:14,312 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6745186027/log.45743349._037953.job.log.tgz.1 /var/lib/boinc/slots/2/log.45743349._037953.job
[2025-07-26 15:19:52] 2025-07-26 20:19:14,321 | INFO     | adding to output.list: log.45743349._037953.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/1d/log.45743349._037953.job.log.tg
[2025-07-26 15:19:52] 2025-07-26 20:19:14,322 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:19:52] 2025-07-26 20:19:14,322 | INFO     | summary of transferred files:
[2025-07-26 15:19:52] 2025-07-26 20:19:14,322 | INFO     |  -- lfn=log.45743349._037953.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:19:52] 2025-07-26 20:19:14,322 | INFO     | stage-out finished correctly
[2025-07-26 15:19:52] 2025-07-26 20:19:14,382 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:19:52] 2025-07-26 20:19:14,413 | INFO     | job 6745186027 has state=finished
[2025-07-26 15:19:52] 2025-07-26 20:19:14,413 | INFO     | preparing for final server update for job 6745186027 in state='finished'
[2025-07-26 15:19:52] 2025-07-26 20:19:14,414 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:19:52] 2025-07-26 20:19:14,414 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:19:52] 2025-07-26 20:19:14,414 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:19:52] 2025-07-26 20:19:14,414 | INFO     | job 6745186027 has finished - writing final server update
[2025-07-26 15:19:52] 2025-07-26 20:19:14,414 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:19:52] 2025-07-26 20:19:14,415 | INFO     | executing command: lscpu
[2025-07-26 15:19:52] 2025-07-26 20:19:14,435 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:19:52] 2025-07-26 20:19:15,465 | INFO     | monitor loop #122: job 0:6745186027 is in state 'finished'
[2025-07-26 15:19:52] 2025-07-26 20:19:15,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:19:52] 2025-07-26 20:19:17,966 | INFO     | monitor loop #123: job 0:6745186027 is in state 'finished'
[2025-07-26 15:19:52] 2025-07-26 20:19:17,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,168 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 15:19:52] 2025-07-26 20:19:20,173 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3563.4570937500002
[2025-07-26 15:19:52] 2025-07-26 20:19:20,178 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6745186027/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | INFO     | extracted standard info from prmon json
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | INFO     | sum of square deviations: 1802824.5
[2025-07-26 15:19:52] 2025-07-26 20:19:20,179 | INFO     | sum of deviations: -350752074.0
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | mean x: 1753560463.5
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | mean y: 3124444.4444444445
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | -- intersect: 341170536722.8034
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | intersect: 341170536722.8034
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | chi2: 0.025486511150596948
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | -- intersect: 341170536722.8034
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | current memory leak: -194.56 B/s (using 18 data points, chi2=0.03)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | could have reported an average CPU frequency of 3950 MHz (4 samples)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | ..............................
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . Timing measurements:
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . get job = 0 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . initial setup = 3 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . payload setup = 3 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . stage-in = 0 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . payload execution = 1513 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . stage-out = 0 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | . log creation = 0 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,180 | INFO     | ..............................
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | 
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | job summary report
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | --------------------------------------------------
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | PanDA job id: 6745186027
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | task id: 45743349
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | errors: (none)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:19:52] 2025-07-26 20:19:20,212 | INFO     | pilot state: finished 
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | transexitcode: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | exeerrorcode: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | exeerrordiag: 
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | exitcode: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | exitmsg: OK
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | cpuconsumptiontime: 16105 s
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | nevents: 400
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | neventsw: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | pid: 12594
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | pgrp: 12594
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | corecount: 12
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | event service: False
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | sizes: {0: 2397248, 1: 2397503, 3: 2397765, 11: 2397793, 1520: 2431612, 1526: 2431750}
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | --------------------------------------------------
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | 
[2025-07-26 15:19:52] 2025-07-26 20:19:20,213 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-26 15:19:52] 2025-07-26 20:19:20,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:19:52] 2025-07-26 20:19:20,227 | INFO     | job 6745186027 has completed (purged errors)
[2025-07-26 15:19:52] 2025-07-26 20:19:20,227 | INFO     | overall cleanup function is called
[2025-07-26 15:19:52] 2025-07-26 20:19:21,237 | INFO     | --- collectZombieJob: --- 10, [12594]
[2025-07-26 15:19:52] 2025-07-26 20:19:21,237 | INFO     | zombie collector waiting for pid 12594
[2025-07-26 15:19:52] 2025-07-26 20:19:21,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:19:52] 2025-07-26 20:19:21,237 | INFO     | collected zombie processes
[2025-07-26 15:19:52] 2025-07-26 20:19:21,237 | INFO     | will attempt to kill all subprocesses of pid=12594
[2025-07-26 15:19:52] 2025-07-26 20:19:21,299 | INFO     | process IDs to be killed: [12594] (in reverse order)
[2025-07-26 15:19:52] 2025-07-26 20:19:21,325 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:19:52] 2025-07-26 20:19:21,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:19:52] 2025-07-26 20:19:21,328 | INFO     | did not find any defunct processes belonging to 12594
[2025-07-26 15:19:52] 2025-07-26 20:19:21,331 | INFO     | did not find any defunct processes belonging to 12594
[2025-07-26 15:19:52] 2025-07-26 20:19:21,331 | INFO     | ready for new job
[2025-07-26 15:19:52] 2025-07-26 20:19:21,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:19:52] 2025-07-26 20:19:21,332 | INFO     | ***************************************
[2025-07-26 15:19:52] 2025-07-26 20:19:21,332 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:19:52] 2025-07-26 20:19:21,332 | INFO     | ***************************************
[2025-07-26 15:19:52] 2025-07-26 20:19:21,332 | INFO     | 
[2025-07-26 15:19:52] 2025-07-26 20:19:21,334 | INFO     | architecture information:
[2025-07-26 15:19:52] 2025-07-26 20:19:21,334 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:19:52] 2025-07-26 20:19:21,344 | INFO     | cat /etc/os-release:
[2025-07-26 15:19:52] NAME="CentOS Linux"
[2025-07-26 15:19:52] VERSION="7 (Core)"
[2025-07-26 15:19:52] ID="centos"
[2025-07-26 15:19:52] ID_LIKE="rhel fedora"
[2025-07-26 15:19:52] VERSION_ID="7"
[2025-07-26 15:19:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:19:52] ANSI_COLOR="0;31"
[2025-07-26 15:19:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:19:52] HOME_URL="https://www.centos.org/"
[2025-07-26 15:19:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:19:52] 
[2025-07-26 15:19:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:19:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:19:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:19:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:19:52] 
[2025-07-26 15:19:52] 2025-07-26 20:19:21,344 | INFO     | ***************************************
[2025-07-26 15:19:52] 2025-07-26 20:19:21,847 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-26 15:19:52] 2025-07-26 20:19:21,856 | INFO     | sufficient remaining disk space (3870389436416 B)
[2025-07-26 15:19:52] 2025-07-26 20:19:21,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:19:52] 2025-07-26 20:19:21,857 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:19:52] 2025-07-26 20:19:21,857 | INFO     | update_server=False
[2025-07-26 15:19:52] 2025-07-26 20:19:21,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:19:52] 2025-07-26 20:19:21,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:19:52] 2025-07-26 20:19:21,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:19:52] 2025-07-26 20:19:21,858 | INFO     | aborting loop
[2025-07-26 15:19:52] 2025-07-26 20:19:21,933 | INFO     | all job control threads have been joined
[2025-07-26 15:19:52] 2025-07-26 20:19:22,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:19:52] 2025-07-26 20:19:22,360 | INFO     | all data control threads have been joined
[2025-07-26 15:19:52] 2025-07-26 20:19:22,479 | INFO     | all payload control threads have been joined
[2025-07-26 15:19:52] 2025-07-26 20:19:22,863 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:22,863 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:22,863 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:22,871 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:22,939 | INFO     | [job] control thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:23,073 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:23,365 | INFO     | [data] control thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:23,374 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:23,484 | INFO     | [payload] control thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:23,991 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:24,042 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:24,141 | INFO     | [job] validate thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:24,305 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:24,365 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:24,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:19:52] 2025-07-26 20:19:28,928 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:32,303 | INFO     | job.realtimelogging is not enabled
[2025-07-26 15:19:52] 2025-07-26 20:19:33,309 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:19:52] 2025-07-26 20:19:34,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683965572928)>', '<ExcThread(monitor, started 140683314714368)>']
[2025-07-26 15:19:52] 2025-07-26 20:19:39,873 | INFO     | all workflow threads have been joined
[2025-07-26 15:19:52] 2025-07-26 20:19:39,873 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:19:52] 2025-07-26 20:19:39,873 | INFO     | traces error code: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:39,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:19:52] 2025-07-26 20:19:52,317 | INFO     | PID=5599 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 15:19:52] 2025-07-26 20:19:52,318 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:19:52] 2025-07-26 20:19:52,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:19:52] 2025-07-26 20:19:52,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:19:52] 2025-07-26 20:19:52,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:19:52] 2025-07-26 20:19:52,318 | INFO     | [monitor] control thread has ended
[2025-07-26 15:19:52] 2025-07-26 20:19:52,383 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:19:52] 2025-07-26 20:19:52,384 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:19:52] 2025-07-26 20:19:52,386 [wrapper] pilotpid: 5599
[2025-07-26 15:19:52] 2025-07-26 20:19:52,387 [wrapper] Pilot exit status: 0
[2025-07-26 15:19:52] 2025-07-26 20:19:52,392 [wrapper] pandaids: 6745186027
[2025-07-26 15:19:52] 2025-07-26 20:19:52,406 [wrapper] cleanup supervisor_pilot 30854 5600
[2025-07-26 15:19:52] 2025-07-26 20:19:52,409 [wrapper] Test setup, not cleaning
[2025-07-26 15:19:52] 2025-07-26 20:19:52,411 [wrapper] apfmon messages muted
[2025-07-26 15:19:52] 2025-07-26 20:19:52,413 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:19:52] 2025-07-26 20:19:52,414 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:19:52]  *** Error codes and diagnostics ***
[2025-07-26 15:19:52]     "exeErrorCode": 0,
[2025-07-26 15:19:52]     "exeErrorDiag": "",
[2025-07-26 15:19:52]     "pilotErrorCode": 0,
[2025-07-26 15:19:52]     "pilotErrorDiag": "",
[2025-07-26 15:19:52]  *** Listing of results directory ***
[2025-07-26 15:19:52] total 386928
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc    530466 Jul 26 07:28 pilot3.tar.gz
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc      5112 Jul 26 07:36 queuedata.json
[2025-07-26 15:19:52] -rwx------ 1 boinc boinc     36292 Jul 26 07:38 runpilot2-wrapper.sh
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc       100 Jul 26 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:19:52] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 14:53 run_atlas
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc       105 Jul 26 14:53 job.xml
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc     15095 Jul 26 14:53 start_atlas.sh
[2025-07-26 15:19:52] drwxrwx--x 1 boinc boinc        76 Jul 26 14:53 shared
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc    542895 Jul 26 14:53 input.tar.gz
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc     10025 Jul 26 14:53 init_data.xml
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc 187984372 Jul 26 14:53 EVNT.45743347._002172.pool.root.1
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc         0 Jul 26 14:53 boinc_setup_complete
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc         0 Jul 26 14:53 boinc_lockfile
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc      2563 Jul 26 14:53 pandaJob.out
[2025-07-26 15:19:52] -rw------- 1 boinc boinc    980125 Jul 26 14:53 agis_schedconf.cvmfs.json
[2025-07-26 15:19:52] -rw------- 1 boinc boinc   1593052 Jul 26 14:53 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:19:52] drwx------ 1 boinc boinc       368 Jul 26 14:53 pilot3
[2025-07-26 15:19:52] -rw------- 1 boinc boinc 203344292 Jul 26 15:18 HITS.45743349._037953.pool.root.1
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc       529 Jul 26 15:19 boinc_task_state.xml
[2025-07-26 15:19:52] -rw------- 1 boinc boinc      1029 Jul 26 15:19 memory_monitor_summary.json
[2025-07-26 15:19:52] -rw------- 1 boinc boinc    325195 Jul 26 15:19 log.45743349._037953.job.log.tgz.1
[2025-07-26 15:19:52] -rw------- 1 boinc boinc      7791 Jul 26 15:19 heartbeat.json
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc      8192 Jul 26 15:19 boinc_mmap_file
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc        27 Jul 26 15:19 wrapper_checkpoint.txt
[2025-07-26 15:19:52] -rw------- 1 boinc boinc       744 Jul 26 15:19 pilotlog.txt
[2025-07-26 15:19:52] -rw------- 1 boinc boinc        95 Jul 26 15:19 pilot_heartbeat.json
[2025-07-26 15:19:52] -rw------- 1 boinc boinc    185027 Jul 26 15:19 log.45743349._037953.job.log.1
[2025-07-26 15:19:52] -rw------- 1 boinc boinc       357 Jul 26 15:19 output.list
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc       620 Jul 26 15:19 runtime_log
[2025-07-26 15:19:52] -rw------- 1 boinc boinc    532480 Jul 26 15:19 result.tar.gz
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc      8684 Jul 26 15:19 runtime_log.err
[2025-07-26 15:19:52] -rw------- 1 boinc boinc       653 Jul 26 15:19 3QUKDmXLtz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTl0KDmCEhJSm.diag
[2025-07-26 15:19:52] -rw-r--r-- 1 boinc boinc     21093 Jul 26 15:19 stderr.txt
[2025-07-26 15:19:52] HITS file was successfully produced:
[2025-07-26 15:19:52] -rw------- 1 boinc boinc 203344292 Jul 26 15:18 shared/HITS.pool.root.1
[2025-07-26 15:19:52]  *** Contents of shared directory: ***
[2025-07-26 15:19:52] total 383228
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc     15095 Jul 26 14:53 start_atlas.sh
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc    542895 Jul 26 14:53 input.tar.gz
[2025-07-26 15:19:52] -rw-r--r-- 2 boinc boinc 187984372 Jul 26 14:53 ATLAS.root_0
[2025-07-26 15:19:52] -rw------- 1 boinc boinc 203344292 Jul 26 15:18 HITS.pool.root.1
[2025-07-26 15:19:52] -rw------- 1 boinc boinc    532480 Jul 26 15:19 result.tar.gz
15:19:53 (1740): run_atlas exited; CPU time 16115.259335
15:19:53 (1740): called boinc_finish(0)

</stderr_txt>
]]>

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