Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:54:10 (3325898): wrapper (7.7.26015): starting
10:54:10 (3325898): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 10:54:10] Arguments: --nthreads 8
[2025-07-26 10:54:10] Threads: 8
[2025-07-26 10:54:10] Checking for CVMFS
[2025-07-26 10:54:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 10:54:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 10:54:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 10:54:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 10:54:13] 2.11.3.0 22717 477772 213404 148784 0 372 33134775 45568001 12839 130560 0 2523394438 99.765 1963475480 20958 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-07-26 10:54:13] CVMFS is ok
[2025-07-26 10:54:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 10:54:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 10:54:13] Further information can be found at the LHC@home message board.
[2025-07-26 10:54:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 10:54:13] Checking for apptainer binary...
[2025-07-26 10:54:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 10:54:13] Running /usr/bin/apptainer --version
[2025-07-26 10:54:14] apptainer version 1.3.3-1.el9
[2025-07-26 10:54:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 10:54:15] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0017.triumf.lcg
[2025-07-26 10:54:15] apptainer works
[2025-07-26 10:54:15] Set ATHENA_PROC_NUMBER=8
[2025-07-26 10:54:15] Set ATHENA_CORE_NUMBER=8
[2025-07-26 10:54:15] Starting ATLAS job with PandaID=6745230127
[2025-07-26 10:54:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 11:02:38]  *** The last 200 lines of the pilot log: ***
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:02:38] 2025-07-26 18:02:03,881 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | wrong length of table data, x=[1753552676.0, 1753552737.0], y=[11467.0, 396088.0] (must be same and length>=4)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . Timing measurements:
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . get job = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . initial setup = 6 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload setup = 74 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-in = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload execution = 151 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-out = 2 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . log creation = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 11:02:38] 2025-07-26 18:02:03,884 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745230127/pilotlog.txt
[2025-07-26 11:02:38] 2025-07-26 18:02:03,931 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 11:02:38] - Log from pilotlog.txt -
[2025-07-26 11:02:38] 2025-07-26 18:02:03,847 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745230127/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | INFO     | extracted standard info from prmon json
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:02:38] 2025-07-26 18:02:03,881 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | wrong length of table data, x=[1753552676.0, 1753552737.0], y=[11467.0, 396088.0] (must be same and length>=4)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . Timing measurements:
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . get job = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . initial setup = 6 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload setup = 74 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-in = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload execution = 151 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-out = 2 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . log creation = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 11:02:38] 2025-07-26 18:02:03,884 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745230127/pilotlog.txt
[2025-07-26 11:02:38] 2025-07-26 18:02:03,932 | WARNING  | 
[2025-07-26 11:02:38] [begin log extracts]
[2025-07-26 11:02:38] - Log from pilotlog.txt -
[2025-07-26 11:02:38] 2025-07-26 18:02:03,847 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745230127/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | INFO     | extracted standard info from prmon json
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:02:38] 2025-07-26 18:02:03,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:02:38] 2025-07-26 18:02:03,881 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | WARNING  | wrong length of table data, x=[1753552676.0, 1753552737.0], y=[11467.0, 396088.0] (must be same and length>=4)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,882 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . Timing measurements:
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . get job = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . initial setup = 6 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload setup = 74 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-in = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . payload execution = 151 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . stage-out = 2 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | . log creation = 0 s
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | ..............................
[2025-07-26 11:02:38] 2025-07-26 18:02:03,883 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 11:02:38] 2025-07-26 18:02:03,884 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745230127/pilotlog.txt
[2025-07-26 11:02:38] [end log extracts]
[2025-07-26 11:02:38] 2025-07-26 18:02:03,932 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 11:02:38] 2025-07-26 18:02:03,933 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | 
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | job summary report
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | --------------------------------------------------
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | PanDA job id: 6745230127
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | task id: 45743349
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 10:59:29,541 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | pilot state: failed 
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | transexitcode: 65
[2025-07-26 11:02:38] 2025-07-26 18:02:04,179 | INFO     | exeerrorcode: 65
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | exitcode: 65
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | cpuconsumptiontime: 19 s
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | nevents: 0
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | neventsw: 0
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | pid: 3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | pgrp: 3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | corecount: 8
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | event service: False
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | sizes: {0: 2397301, 1: 2397500, 12: 2397500, 17: 2397790, 23: 2397818, 231: 2421097, 232: 2421201, 236: 2425549, 369: 2425687}
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | --------------------------------------------------
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | 
[2025-07-26 11:02:38] 2025-07-26 18:02:04,180 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 11:02:38] 2025-07-26 18:02:04,199 | INFO     | job 6745230127 has completed (purged errors)
[2025-07-26 11:02:38] 2025-07-26 18:02:04,200 | INFO     | overall cleanup function is called
[2025-07-26 11:02:38] 2025-07-26 18:02:05,210 | INFO     | --- collectZombieJob: --- 10, [3335883]
[2025-07-26 11:02:38] 2025-07-26 18:02:05,210 | INFO     | zombie collector waiting for pid 3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:05,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 11:02:38] 2025-07-26 18:02:05,210 | INFO     | collected zombie processes
[2025-07-26 11:02:38] 2025-07-26 18:02:05,210 | INFO     | will attempt to kill all subprocesses of pid=3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:05,825 | INFO     | process IDs to be killed: [3335883] (in reverse order)
[2025-07-26 11:02:38] 2025-07-26 18:02:05,893 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 11:02:38] 2025-07-26 18:02:05,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 11:02:38] 2025-07-26 18:02:05,923 | INFO     | did not find any defunct processes belonging to 3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:05,946 | INFO     | did not find any defunct processes belonging to 3335883
[2025-07-26 11:02:38] 2025-07-26 18:02:05,946 | INFO     | ready for new job
[2025-07-26 11:02:38] 2025-07-26 18:02:05,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 11:02:38] 2025-07-26 18:02:05,947 | INFO     | ***************************************
[2025-07-26 11:02:38] 2025-07-26 18:02:05,948 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 11:02:38] 2025-07-26 18:02:05,948 | INFO     | ***************************************
[2025-07-26 11:02:38] 2025-07-26 18:02:05,948 | INFO     | 
[2025-07-26 11:02:38] 2025-07-26 18:02:05,971 | INFO     | architecture information:
[2025-07-26 11:02:38] 2025-07-26 18:02:05,974 | INFO     | executing command: cat /etc/os-release
[2025-07-26 11:02:38] 2025-07-26 18:02:06,028 | INFO     | cat /etc/os-release:
[2025-07-26 11:02:38] NAME="CentOS Linux"
[2025-07-26 11:02:38] VERSION="7 (Core)"
[2025-07-26 11:02:38] ID="centos"
[2025-07-26 11:02:38] ID_LIKE="rhel fedora"
[2025-07-26 11:02:38] VERSION_ID="7"
[2025-07-26 11:02:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 11:02:38] ANSI_COLOR="0;31"
[2025-07-26 11:02:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 11:02:38] HOME_URL="https://www.centos.org/"
[2025-07-26 11:02:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 11:02:38] 
[2025-07-26 11:02:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 11:02:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 11:02:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 11:02:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 11:02:38] 
[2025-07-26 11:02:38] 2025-07-26 18:02:06,028 | INFO     | ***************************************
[2025-07-26 11:02:38] 2025-07-26 18:02:06,531 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-26 11:02:38] 2025-07-26 18:02:06,638 | INFO     | sufficient remaining disk space (1336116510720 B)
[2025-07-26 11:02:38] 2025-07-26 18:02:06,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 11:02:38] 2025-07-26 18:02:06,639 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 11:02:38] 2025-07-26 18:02:06,639 | INFO     | update_server=False
[2025-07-26 11:02:38] 2025-07-26 18:02:06,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 11:02:38] 2025-07-26 18:02:07,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 11:02:38] 2025-07-26 18:02:07,228 | INFO     | all payload control threads have been joined
[2025-07-26 11:02:38] 2025-07-26 18:02:07,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:02:38] 2025-07-26 18:02:07,529 | INFO     | aborting loop
[2025-07-26 11:02:38] 2025-07-26 18:02:07,656 | INFO     | [job] retrieve thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:07,657 | INFO     | all data control threads have been joined
[2025-07-26 11:02:38] 2025-07-26 18:02:07,868 | INFO     | [payload] validate_post thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,160 | INFO     | all job control threads have been joined
[2025-07-26 11:02:38] 2025-07-26 18:02:08,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 11:02:38] 2025-07-26 18:02:08,231 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,234 | INFO     | [payload] control thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,267 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,367 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,532 | INFO     | [payload] failed_post thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,540 | INFO     | [job] job monitor thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,678 | INFO     | [data] control thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,688 | INFO     | [data] copytool_in thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:08,688 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:09,001 | INFO     | [job] validate thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:09,132 | INFO     | [data] copytool_out thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:09,166 | INFO     | [job] control thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:09,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:02:38] 2025-07-26 18:02:10,211 | INFO     | [job] queue monitor thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:12,231 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 11:02:38] 2025-07-26 18:02:13,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153482012480)>', '<ExcThread(monitor, started 140152634603264)>']
[2025-07-26 11:02:38] 2025-07-26 18:02:18,194 | INFO     | all workflow threads have been joined
[2025-07-26 11:02:38] 2025-07-26 18:02:18,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 11:02:38] 2025-07-26 18:02:18,194 | INFO     | traces error code: 0
[2025-07-26 11:02:38] 2025-07-26 18:02:18,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | INFO     | PID=3329494 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | INFO     | .. there are 33 such processes running
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 11:02:38] 2025-07-26 18:02:37,470 | INFO     | [monitor] control thread has ended
[2025-07-26 11:02:38] 2025-07-26 18:02:37,596 [wrapper] ==== pilot stdout END ====
[2025-07-26 11:02:38] 2025-07-26 18:02:37,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 11:02:38] 2025-07-26 18:02:37,600 [wrapper] pilotpid: 3329494
[2025-07-26 11:02:38] 2025-07-26 18:02:37,601 [wrapper] Pilot exit status: 0
[2025-07-26 11:02:38] 2025-07-26 18:02:37,627 [wrapper] pandaids: 6745230127
[2025-07-26 11:02:38] 2025-07-26 18:02:37,669 [wrapper] cleanup supervisor_pilot 3329500 3329495
[2025-07-26 11:02:38] 2025-07-26 18:02:37,671 [wrapper] Test setup, not cleaning
[2025-07-26 11:02:38] 2025-07-26 18:02:37,673 [wrapper] apfmon messages muted
[2025-07-26 11:02:38] 2025-07-26 18:02:37,675 [wrapper] ==== wrapper stdout END ====
[2025-07-26 11:02:38] 2025-07-26 18:02:37,677 [wrapper] ==== wrapper stderr END ====
[2025-07-26 11:02:38]  *** Error codes and diagnostics ***
[2025-07-26 11:02:38]     "exeErrorCode": 65,
[2025-07-26 11:02:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 11:02:38]     "pilotErrorCode": 1305,
[2025-07-26 11:02:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 11:02:38]  *** Listing of results directory ***
[2025-07-26 11:02:38] total 150956
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc    530466 Jul 26 07:40 pilot3.tar.gz
[2025-07-26 11:02:38] -rwx------. 1 boinc boinc     36292 Jul 26 08:16 runpilot2-wrapper.sh
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc      5112 Jul 26 08:16 queuedata.json
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc       100 Jul 26 10:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 11:02:38] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 10:54 run_atlas
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc       105 Jul 26 10:54 job.xml
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc      6448 Jul 26 10:54 init_data.xml
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc 150474984 Jul 26 10:54 EVNT.45743347._002282.pool.root.1
[2025-07-26 11:02:38] drwxrwx--x. 2 boinc boinc      4096 Jul 26 10:54 shared
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc    542891 Jul 26 10:54 input.tar.gz
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc     15095 Jul 26 10:54 start_atlas.sh
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc         0 Jul 26 10:54 boinc_lockfile
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc      2563 Jul 26 10:54 pandaJob.out
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc    980125 Jul 26 10:54 agis_schedconf.cvmfs.json
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc   1593052 Jul 26 10:54 agis_ddmendpoints.agis.ALL.json
[2025-07-26 11:02:38] drwx------. 4 boinc boinc      4096 Jul 26 10:55 pilot3
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc       982 Jul 26 10:59 memory_monitor_summary.json
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc       524 Jul 26 10:59 boinc_task_state.xml
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc     22310 Jul 26 10:59 log.45743349._040034.job.log.tgz.1
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc        95 Jul 26 11:02 pilot_heartbeat.json
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc      8397 Jul 26 11:02 heartbeat.json
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc      8192 Jul 26 11:02 boinc_mmap_file
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc        23 Jul 26 11:02 wrapper_checkpoint.txt
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc       823 Jul 26 11:02 pilotlog.txt
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc     89558 Jul 26 11:02 log.45743349._040034.job.log.1
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc       188 Jul 26 11:02 output.list
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc       620 Jul 26 11:02 runtime_log
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc    133120 Jul 26 11:02 result.tar.gz
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc      8648 Jul 26 11:02 runtime_log.err
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc       644 Jul 26 11:02 51rMDmSovz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrRSLDmoD9j6n.diag
[2025-07-26 11:02:38] -rw-r--r--. 1 boinc boinc     22061 Jul 26 11:02 stderr.txt
[2025-07-26 11:02:38] No HITS result produced
[2025-07-26 11:02:38]  *** Contents of shared directory: ***
[2025-07-26 11:02:38] total 147636
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc 150474984 Jul 26 10:54 ATLAS.root_0
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc    542891 Jul 26 10:54 input.tar.gz
[2025-07-26 11:02:38] -rw-r--r--. 2 boinc boinc     15095 Jul 26 10:54 start_atlas.sh
[2025-07-26 11:02:38] -rw-------. 1 boinc boinc    133120 Jul 26 11:02 result.tar.gz
11:02:40 (3325898): run_atlas exited; CPU time 34.259572
11:02:40 (3325898): called boinc_finish(0)

</stderr_txt>
]]>

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