Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:35:33 (21211): wrapper (7.7.26015): starting
13:35:33 (21211): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 13:35:33] Arguments: --nthreads 12
[2025-07-26 13:35:33] Threads: 12
[2025-07-26 13:35:33] Checking for CVMFS
[2025-07-26 13:35:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:35:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:35:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:35:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:35:33] 2.11.2.0 3087 110824 98160 148784 0 56 18273376 20275200 1 130560 0 38942871 99.974 9082746 10338 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 13:35:33] CVMFS is ok
[2025-07-26 13:35:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:35:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 13:35:33] Further information can be found at the LHC@home message board.
[2025-07-26 13:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:35:33] Checking for apptainer binary...
[2025-07-26 13:35:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 13:35:33] Running /usr/bin/apptainer --version
[2025-07-26 13:35:33] apptainer version 1.3.2-1.el7
[2025-07-26 13:35:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:35:35] c-115-42.aglt2.org
[2025-07-26 13:35:35] apptainer works
[2025-07-26 13:35:35] Set ATHENA_PROC_NUMBER=12
[2025-07-26 13:35:35] Set ATHENA_CORE_NUMBER=12
[2025-07-26 13:35:35] Starting ATLAS job with PandaID=6745229985
[2025-07-26 13:35:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:49:27]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:49:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 14:49:27]  replicas=None
[2025-07-26 14:49:27]  scope=mc23_13p6TeV
[2025-07-26 14:49:27]  status=None
[2025-07-26 14:49:27]  status_code=0
[2025-07-26 14:49:27]  storage_token=
[2025-07-26 14:49:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745229985/log.45743349._039893.job.log.tgz.1
[2025-07-26 14:49:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/c1/log.45743349._039893.job.log.tgz.1
[2025-07-26 14:49:27]  workdir=None
[2025-07-26 14:49:27] ]
[2025-07-26 14:49:27] 2025-07-26 18:48:46,830 | INFO     | transferring file log.45743349._039893.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745229985/log.45743349._039893.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 14:49:27] 2025-07-26 18:48:46,830 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745229985/log.45743349._039893.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._039893.job
[2025-07-26 14:49:27] 2025-07-26 18:48:46,853 | INFO     | adding to output.list: log.45743349._039893.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/c1/log.45743349._039893.job.log.tg
[2025-07-26 14:49:27] 2025-07-26 18:48:46,854 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 14:49:27] 2025-07-26 18:48:46,854 | INFO     | summary of transferred files:
[2025-07-26 14:49:27] 2025-07-26 18:48:46,854 | INFO     |  -- lfn=log.45743349._039893.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 14:49:27] 2025-07-26 18:48:46,854 | INFO     | stage-out finished correctly
[2025-07-26 14:49:27] 2025-07-26 18:48:47,006 | WARNING  | process 31388 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 14:49:27] 2025-07-26 18:48:47,006 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745229985/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:49:27] 2025-07-26 18:48:47,088 | INFO     | number of running child processes to parent process 31388: 1
[2025-07-26 14:49:27] 2025-07-26 18:48:47,088 | INFO     | maximum number of monitored processes: 6
[2025-07-26 14:49:27] 2025-07-26 18:48:48,785 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 14:49:27] 2025-07-26 18:48:49,591 | INFO     | monitor loop #328: job 0:6745229985 is in state 'finished'
[2025-07-26 14:49:27] 2025-07-26 18:48:49,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:49:27] 2025-07-26 18:48:49,940 | INFO     | job 6745229985 has state=finished
[2025-07-26 14:49:27] 2025-07-26 18:48:49,940 | INFO     | preparing for final server update for job 6745229985 in state='finished'
[2025-07-26 14:49:27] 2025-07-26 18:48:49,941 | INFO     | this job has now completed (state=finished)
[2025-07-26 14:49:27] 2025-07-26 18:48:49,941 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 14:49:27] 2025-07-26 18:48:49,941 | INFO     | log transfer has been attempted: DONE
[2025-07-26 14:49:27] 2025-07-26 18:48:49,941 | INFO     | job 6745229985 has finished - writing final server update
[2025-07-26 14:49:27] 2025-07-26 18:48:49,941 | INFO     | total number of processed events: 400 (read)
[2025-07-26 14:49:27] 2025-07-26 18:48:49,942 | INFO     | executing command: lscpu
[2025-07-26 14:49:27] 2025-07-26 18:48:49,969 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 14:49:27] 2025-07-26 18:48:52,094 | INFO     | monitor loop #329: job 0:6745229985 is in state 'finished'
[2025-07-26 14:49:27] 2025-07-26 18:48:52,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:49:27] 2025-07-26 18:48:54,598 | INFO     | monitor loop #330: job 0:6745229985 is in state 'finished'
[2025-07-26 14:49:27] 2025-07-26 18:48:54,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,446 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 14:49:27] 2025-07-26 18:48:55,450 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-07-26 14:49:27] 2025-07-26 18:48:55,452 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745229985/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,453 | INFO     | extracted standard info from prmon json
[2025-07-26 14:49:27] 2025-07-26 18:48:55,453 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 14:49:27] 2025-07-26 18:48:55,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 14:49:27] 2025-07-26 18:48:55,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:49:27] 2025-07-26 18:48:55,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:49:27] 2025-07-26 18:48:55,456 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:49:27] 2025-07-26 18:48:55,456 | INFO     | sum of square deviations: 85136480.0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,456 | INFO     | sum of deviations: -7112527654.0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,456 | INFO     | mean x: 1753553635.0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,456 | INFO     | mean y: 2811498.107692308
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | -- intersect: 146499339446.0534
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | intersect: 146499339446.0534
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | chi2: 0.0502852441945278
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | -- intersect: 146499339446.0534
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | current memory leak: -83.54 B/s (using 65 data points, chi2=0.05)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,457 | INFO     | could have reported an average CPU frequency of 2161 MHz (6 samples)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | ..............................
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . Timing measurements:
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . get job = 0 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . initial setup = 2 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . payload setup = 9 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . stage-in = 0 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . payload execution = 4349 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . stage-out = 0 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | . log creation = 0 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,458 | INFO     | ..............................
[2025-07-26 14:49:27] 2025-07-26 18:48:55,536 | INFO     | 
[2025-07-26 14:49:27] 2025-07-26 18:48:55,536 | INFO     | job summary report
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | --------------------------------------------------
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | PanDA job id: 6745229985
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | task id: 45743349
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | errors: (none)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | pilot state: finished 
[2025-07-26 14:49:27] 2025-07-26 18:48:55,537 | INFO     | transexitcode: 0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | exeerrorcode: 0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | exeerrordiag: 
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | exitcode: 0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | exitmsg: OK
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | cpuconsumptiontime: 48087 s
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | nevents: 400
[2025-07-26 14:49:27] 2025-07-26 18:48:55,538 | INFO     | neventsw: 0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | pid: 31388
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | pgrp: 31388
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | corecount: 12
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | event service: False
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | sizes: {0: 2397303, 1: 2397502, 5: 2397764, 11: 2397820, 4362: 2423898, 4363: 2432896, 4365: 2433080, 4372: 2433274}
[2025-07-26 14:49:27] 2025-07-26 18:48:55,539 | INFO     | --------------------------------------------------
[2025-07-26 14:49:27] 2025-07-26 18:48:55,540 | INFO     | 
[2025-07-26 14:49:27] 2025-07-26 18:48:55,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 14:49:27] 2025-07-26 18:48:55,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,565 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:49:27] 2025-07-26 18:48:55,567 | INFO     | job 6745229985 has completed (purged errors)
[2025-07-26 14:49:27] 2025-07-26 18:48:55,568 | INFO     | overall cleanup function is called
[2025-07-26 14:49:27] 2025-07-26 18:48:56,572 | INFO     | --- collectZombieJob: --- 10, [31388]
[2025-07-26 14:49:27] 2025-07-26 18:48:56,572 | INFO     | zombie collector waiting for pid 31388
[2025-07-26 14:49:27] 2025-07-26 18:48:56,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:49:27] 2025-07-26 18:48:56,572 | INFO     | collected zombie processes
[2025-07-26 14:49:27] 2025-07-26 18:48:56,572 | INFO     | will attempt to kill all subprocesses of pid=31388
[2025-07-26 14:49:27] 2025-07-26 18:48:56,662 | INFO     | process IDs to be killed: [31388] (in reverse order)
[2025-07-26 14:49:27] 2025-07-26 18:48:56,713 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:49:27] 2025-07-26 18:48:56,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:49:27] 2025-07-26 18:48:56,717 | INFO     | did not find any defunct processes belonging to 31388
[2025-07-26 14:49:27] 2025-07-26 18:48:56,720 | INFO     | did not find any defunct processes belonging to 31388
[2025-07-26 14:49:27] 2025-07-26 18:48:56,720 | INFO     | ready for new job
[2025-07-26 14:49:27] 2025-07-26 18:48:56,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:49:27] 2025-07-26 18:48:56,721 | INFO     | ***************************************
[2025-07-26 14:49:27] 2025-07-26 18:48:56,721 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:49:27] 2025-07-26 18:48:56,722 | INFO     | ***************************************
[2025-07-26 14:49:27] 2025-07-26 18:48:56,722 | INFO     | 
[2025-07-26 14:49:27] 2025-07-26 18:48:56,722 | INFO     | architecture information:
[2025-07-26 14:49:27] 2025-07-26 18:48:56,723 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:49:27] 2025-07-26 18:48:56,739 | INFO     | cat /etc/os-release:
[2025-07-26 14:49:27] NAME="CentOS Linux"
[2025-07-26 14:49:27] VERSION="7 (Core)"
[2025-07-26 14:49:27] ID="centos"
[2025-07-26 14:49:27] ID_LIKE="rhel fedora"
[2025-07-26 14:49:27] VERSION_ID="7"
[2025-07-26 14:49:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:49:27] ANSI_COLOR="0;31"
[2025-07-26 14:49:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:49:27] HOME_URL="https://www.centos.org/"
[2025-07-26 14:49:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:49:27] 
[2025-07-26 14:49:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:49:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:49:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:49:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:49:27] 
[2025-07-26 14:49:27] 2025-07-26 18:48:56,739 | INFO     | ***************************************
[2025-07-26 14:49:27] 2025-07-26 18:48:57,241 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 14:49:27] 2025-07-26 18:48:57,258 | INFO     | sufficient remaining disk space (18732810240 B)
[2025-07-26 14:49:27] 2025-07-26 18:48:57,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:49:27] 2025-07-26 18:48:57,258 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:49:27] 2025-07-26 18:48:57,258 | INFO     | update_server=False
[2025-07-26 14:49:27] 2025-07-26 18:48:57,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:49:27] 2025-07-26 18:48:57,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:49:27] 2025-07-26 18:48:57,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:49:27] 2025-07-26 18:48:57,554 | INFO     | all job control threads have been joined
[2025-07-26 14:49:27] 2025-07-26 18:48:58,079 | INFO     | all payload control threads have been joined
[2025-07-26 14:49:27] 2025-07-26 18:48:58,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:49:27] 2025-07-26 18:48:58,107 | INFO     | aborting loop
[2025-07-26 14:49:27] 2025-07-26 18:48:58,264 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,265 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,265 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,266 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,271 | INFO     | all data control threads have been joined
[2025-07-26 14:49:27] 2025-07-26 18:48:58,313 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,560 | INFO     | [job] control thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:58,755 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,085 | INFO     | [payload] control thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,112 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,191 | INFO     | [job] validate thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,276 | INFO     | [data] control thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,354 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:49:27] 2025-07-26 18:48:59,409 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,440 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:48:59,456 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:49:03,379 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:49:27] 2025-07-26 18:49:05,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847321614144)>', '<ExcThread(monitor, started 139846744008448)>']
[2025-07-26 14:49:27] 2025-07-26 18:49:10,231 | INFO     | all workflow threads have been joined
[2025-07-26 14:49:27] 2025-07-26 18:49:10,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:49:27] 2025-07-26 18:49:10,231 | INFO     | traces error code: 0
[2025-07-26 14:49:27] 2025-07-26 18:49:10,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:49:27] 2025-07-26 18:49:27,141 | INFO     | PID=24796 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 14:49:27] 2025-07-26 18:49:27,141 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:49:27] 2025-07-26 18:49:27,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:49:27] 2025-07-26 18:49:27,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:49:27] 2025-07-26 18:49:27,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:49:27] 2025-07-26 18:49:27,142 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 14:49:27] 2025-07-26 18:49:27,142 | INFO     | [monitor] control thread has ended
[2025-07-26 14:49:27] 2025-07-26 18:49:27,231 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:49:27] 2025-07-26 18:49:27,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:49:27] 2025-07-26 18:49:27,238 [wrapper] pilotpid: 24796
[2025-07-26 14:49:27] 2025-07-26 18:49:27,242 [wrapper] Pilot exit status: 0
[2025-07-26 14:49:27] 2025-07-26 18:49:27,257 [wrapper] pandaids: 6745229985
[2025-07-26 14:49:27] 2025-07-26 18:49:27,297 [wrapper] cleanup supervisor_pilot 27496 24797
[2025-07-26 14:49:27] 2025-07-26 18:49:27,300 [wrapper] Test setup, not cleaning
[2025-07-26 14:49:27] 2025-07-26 18:49:27,304 [wrapper] apfmon messages muted
[2025-07-26 14:49:27] 2025-07-26 18:49:27,308 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:49:27] 2025-07-26 18:49:27,311 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:49:27]  *** Error codes and diagnostics ***
[2025-07-26 14:49:27]     "exeErrorCode": 0,
[2025-07-26 14:49:27]     "exeErrorDiag": "",
[2025-07-26 14:49:27]     "pilotErrorCode": 0,
[2025-07-26 14:49:27]     "pilotErrorDiag": "",
[2025-07-26 14:49:27]  *** Listing of results directory ***
[2025-07-26 14:49:27] total 357740
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 10:40 pilot3.tar.gz
[2025-07-26 14:49:27] -rwx------ 1 boincer umatlas     36292 Jul 26 11:07 runpilot2-wrapper.sh
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 11:07 queuedata.json
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas       100 Jul 26 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:49:27] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 13:35 run_atlas
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas       105 Jul 26 13:35 job.xml
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas 148729143 Jul 26 13:35 EVNT.45743347._002273.pool.root.1
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 13:35 start_atlas.sh
[2025-07-26 14:49:27] drwxrwx--x 2 boincer umatlas      4096 Jul 26 13:35 shared
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas    542884 Jul 26 13:35 input.tar.gz
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas         0 Jul 26 13:35 boinc_lockfile
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas      2562 Jul 26 13:35 pandaJob.out
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas    980125 Jul 26 13:35 agis_schedconf.cvmfs.json
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas   1593052 Jul 26 13:35 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:49:27] drwx------ 4 boincer umatlas      4096 Jul 26 13:35 pilot3
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas      5869 Jul 26 14:46 init_data.xml
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas 212158710 Jul 26 14:48 HITS.45743349._039893.pool.root.1
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas       529 Jul 26 14:48 boinc_task_state.xml
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas      1050 Jul 26 14:48 memory_monitor_summary.json
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas        95 Jul 26 14:48 pilot_heartbeat.json
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas    360294 Jul 26 14:48 log.45743349._039893.job.log.tgz.1
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 14:48 boinc_mmap_file
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas        27 Jul 26 14:48 wrapper_checkpoint.txt
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas      7855 Jul 26 14:48 heartbeat.json
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas       815 Jul 26 14:49 pilotlog.txt
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas    424314 Jul 26 14:49 log.45743349._039893.job.log.1
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas       357 Jul 26 14:49 output.list
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas       620 Jul 26 14:49 runtime_log
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas    798720 Jul 26 14:49 result.tar.gz
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas      8662 Jul 26 14:49 runtime_log.err
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas       659 Jul 26 14:49 c4sLDmyfvz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8PSLDmiZK2Jm.diag
[2025-07-26 14:49:27] -rw-r--r-- 1 boincer umatlas     21913 Jul 26 14:49 stderr.txt
[2025-07-26 14:49:27] HITS file was successfully produced:
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas 212158710 Jul 26 14:48 shared/HITS.pool.root.1
[2025-07-26 14:49:27]  *** Contents of shared directory: ***
[2025-07-26 14:49:27] total 353768
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas 148729143 Jul 26 13:35 ATLAS.root_0
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 13:35 start_atlas.sh
[2025-07-26 14:49:27] -rw-r--r-- 2 boincer umatlas    542884 Jul 26 13:35 input.tar.gz
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas 212158710 Jul 26 14:48 HITS.pool.root.1
[2025-07-26 14:49:27] -rw------- 1 boincer umatlas    798720 Jul 26 14:49 result.tar.gz
14:49:28 (21211): run_atlas exited; CPU time 48077.091780
14:49:28 (21211): called boinc_finish(0)

</stderr_txt>
]]>

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