Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:02:50 (260350): wrapper (7.7.26015): starting
14:02:50 (260350): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 14:02:50] Arguments: --nthreads 8
[2025-07-26 14:02:50] Threads: 8
[2025-07-26 14:02:50] Checking for CVMFS
[2025-07-26 14:02:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:02:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:02:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:02:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:02:51] 2.13.0.0 112940 26126 211456 148784 3 906 39817372 40960001 35445 16776704 0 215913655 99.658 220673809 30080 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 14:02:51] CVMFS is ok
[2025-07-26 14:02:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 14:02:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 14:02:51] Further information can be found at the LHC@home message board.
[2025-07-26 14:02:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:02:51] Checking for apptainer binary...
[2025-07-26 14:02:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:02:51] Running /usr/bin/apptainer --version
[2025-07-26 14:02:51] apptainer version 1.4.1-1.el9
[2025-07-26 14:02:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:02:52] c8-7-3.aglt2.org
[2025-07-26 14:02:52] apptainer works
[2025-07-26 14:02:52] Set ATHENA_PROC_NUMBER=8
[2025-07-26 14:02:52] Set ATHENA_CORE_NUMBER=8
[2025-07-26 14:02:52] Starting ATLAS job with PandaID=6744979016
[2025-07-26 14:02:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:41:21]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:41:21] 2025-07-26 19:40:11,436 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:41:21] 2025-07-26 19:40:11,436 | INFO     | job 6744979016 has finished - writing final server update
[2025-07-26 15:41:21] 2025-07-26 19:40:11,441 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:41:21] 2025-07-26 19:40:11,464 | INFO     | executing command: lscpu
[2025-07-26 15:41:21] 2025-07-26 19:40:11,671 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:41:21] 2025-07-26 19:40:12,787 | WARNING  | process 276120 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 15:41:21] 2025-07-26 19:40:12,787 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744979016/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:41:21] 2025-07-26 19:40:13,543 | INFO     | number of running child processes to parent process 276120: 1
[2025-07-26 15:41:21] 2025-07-26 19:40:13,544 | INFO     | maximum number of monitored processes: 6
[2025-07-26 15:41:21] 2025-07-26 19:40:16,049 | INFO     | monitor loop #388: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:16,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:18,554 | INFO     | monitor loop #389: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:18,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:21,065 | INFO     | monitor loop #390: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:21,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:23,570 | INFO     | monitor loop #391: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:23,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:26,076 | INFO     | monitor loop #392: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:26,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:27,015 | INFO     | PID=265119 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 15:41:21] 2025-07-26 19:40:27,030 | INFO     | .. there are 38 such processes running
[2025-07-26 15:41:21] 2025-07-26 19:40:28,586 | INFO     | monitor loop #393: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:28,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:31,093 | INFO     | monitor loop #394: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:31,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:33,600 | INFO     | monitor loop #395: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:33,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:36,115 | INFO     | monitor loop #396: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:36,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:38,620 | INFO     | monitor loop #397: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:38,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:41,125 | INFO     | monitor loop #398: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:41,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:43,630 | INFO     | monitor loop #399: job 0:6744979016 is in state 'finished'
[2025-07-26 15:41:21] 2025-07-26 19:40:43,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,560 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 15:41:21] 2025-07-26 19:40:44,569 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3695.2276328124985
[2025-07-26 15:41:21] 2025-07-26 19:40:44,595 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6744979016/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,595 | INFO     | extracted standard info from prmon json
[2025-07-26 15:41:21] 2025-07-26 19:40:44,596 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:41:21] 2025-07-26 19:40:44,596 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:41:21] 2025-07-26 19:40:44,596 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:41:21] 2025-07-26 19:40:44,596 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:41:21] 2025-07-26 19:40:44,597 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:41:21] 2025-07-26 19:40:44,597 | INFO     | sum of square deviations: 190407962.98823565
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | sum of deviations: -656712173.9999998
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | mean x: 1753556059.0117648
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | mean y: 2171688.0
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | -- intersect: 6050141498.042232
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | intersect: 6050141498.042232
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | chi2: 0.1384764558837273
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | -- intersect: 6050141498.042232
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | current memory leak: -3.45 B/s (using 85 data points, chi2=0.14)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,598 | INFO     | could have reported an average CPU frequency of 3738 MHz (7 samples)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | ..............................
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . Timing measurements:
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . get job = 0 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . initial setup = 8 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . payload setup = 53 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . stage-in = 0 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . payload execution = 5638 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . stage-out = 2 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | . log creation = 0 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,599 | INFO     | ..............................
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | 
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | job summary report
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | --------------------------------------------------
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | PanDA job id: 6744979016
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | task id: 45743349
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | errors: (none)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | pilot state: finished 
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | transexitcode: 0
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | exeerrorcode: 0
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | exeerrordiag: 
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | exitcode: 0
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | exitmsg: OK
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | cpuconsumptiontime: 28194 s
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | nevents: 400
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | neventsw: 0
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | pid: 276120
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | pgrp: 276120
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | corecount: 8
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | event service: False
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | sizes: {0: 2397246, 1: 2397501, 2: 2397501, 12: 2397529, 23: 2397557, 34: 2398003, 5696: 2424675, 5698: 2433673, 5699: 2433729, 5733: 2433923}
[2025-07-26 15:41:21] 2025-07-26 19:40:44,674 | INFO     | --------------------------------------------------
[2025-07-26 15:41:21] 2025-07-26 19:40:44,675 | INFO     | 
[2025-07-26 15:41:21] 2025-07-26 19:40:44,675 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | job 6744979016 has completed (purged errors)
[2025-07-26 15:41:21] 2025-07-26 19:40:44,745 | INFO     | overall cleanup function is called
[2025-07-26 15:41:21] 2025-07-26 19:40:45,767 | INFO     | --- collectZombieJob: --- 10, [276120]
[2025-07-26 15:41:21] 2025-07-26 19:40:45,767 | INFO     | zombie collector waiting for pid 276120
[2025-07-26 15:41:21] 2025-07-26 19:40:45,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:41:21] 2025-07-26 19:40:45,767 | INFO     | collected zombie processes
[2025-07-26 15:41:21] 2025-07-26 19:40:45,767 | INFO     | will attempt to kill all subprocesses of pid=276120
[2025-07-26 15:41:21] 2025-07-26 19:40:47,060 | INFO     | process IDs to be killed: [276120] (in reverse order)
[2025-07-26 15:41:21] 2025-07-26 19:40:47,336 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:41:21] 2025-07-26 19:40:47,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:41:21] 2025-07-26 19:40:47,382 | INFO     | did not find any defunct processes belonging to 276120
[2025-07-26 15:41:21] 2025-07-26 19:40:47,467 | INFO     | did not find any defunct processes belonging to 276120
[2025-07-26 15:41:21] 2025-07-26 19:40:47,467 | INFO     | ready for new job
[2025-07-26 15:41:21] 2025-07-26 19:40:47,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:41:21] 2025-07-26 19:40:47,469 | INFO     | ***************************************
[2025-07-26 15:41:21] 2025-07-26 19:40:47,469 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:41:21] 2025-07-26 19:40:47,469 | INFO     | ***************************************
[2025-07-26 15:41:21] 2025-07-26 19:40:47,469 | INFO     | 
[2025-07-26 15:41:21] 2025-07-26 19:40:47,494 | INFO     | architecture information:
[2025-07-26 15:41:21] 2025-07-26 19:40:47,499 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:41:21] 2025-07-26 19:40:47,616 | INFO     | cat /etc/os-release:
[2025-07-26 15:41:21] NAME="CentOS Linux"
[2025-07-26 15:41:21] VERSION="7 (Core)"
[2025-07-26 15:41:21] ID="centos"
[2025-07-26 15:41:21] ID_LIKE="rhel fedora"
[2025-07-26 15:41:21] VERSION_ID="7"
[2025-07-26 15:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:41:21] ANSI_COLOR="0;31"
[2025-07-26 15:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:41:21] HOME_URL="https://www.centos.org/"
[2025-07-26 15:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:41:21] 
[2025-07-26 15:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:41:21] 
[2025-07-26 15:41:21] 2025-07-26 19:40:47,616 | INFO     | ***************************************
[2025-07-26 15:41:21] 2025-07-26 19:40:48,120 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 15:41:21] 2025-07-26 19:40:48,219 | INFO     | sufficient remaining disk space (172436226048 B)
[2025-07-26 15:41:21] 2025-07-26 19:40:48,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:41:21] 2025-07-26 19:40:48,220 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:41:21] 2025-07-26 19:40:48,220 | INFO     | update_server=False
[2025-07-26 15:41:21] 2025-07-26 19:40:48,220 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:41:21] 2025-07-26 19:40:48,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:41:21] 2025-07-26 19:40:48,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:41:21] 2025-07-26 19:40:48,484 | INFO     | all data control threads have been joined
[2025-07-26 15:41:21] 2025-07-26 19:40:48,650 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 15:41:21] 2025-07-26 19:40:48,650 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 15:41:21] 2025-07-26 19:40:48,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:41:21] 2025-07-26 19:40:48,650 | INFO     | will abort loop
[2025-07-26 15:41:21] 2025-07-26 19:40:49,167 | INFO     | all payload control threads have been joined
[2025-07-26 15:41:21] 2025-07-26 19:40:49,226 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,262 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,396 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,397 | INFO     | [job] validate thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,397 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,491 | INFO     | [data] control thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,656 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:49,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:41:21] 2025-07-26 19:40:49,809 | INFO     | all job control threads have been joined
[2025-07-26 15:41:21] 2025-07-26 19:40:50,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,173 | INFO     | [payload] control thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,228 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,304 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,344 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,365 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,694 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:50,815 | INFO     | [job] control thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:52,433 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:41:21] 2025-07-26 19:40:54,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140266338367296)>', '<ExcThread(monitor, started 140265092273920)>']
[2025-07-26 15:41:21] 2025-07-26 19:40:59,338 | INFO     | all workflow threads have been joined
[2025-07-26 15:41:21] 2025-07-26 19:40:59,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:41:21] 2025-07-26 19:40:59,338 | INFO     | traces error code: 0
[2025-07-26 15:41:21] 2025-07-26 19:40:59,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:41:21] 2025-07-26 19:41:19,690 | INFO     | PID=265119 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | INFO     | .. there are 38 such processes running
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:41:21] 2025-07-26 19:41:19,691 | INFO     | [monitor] control thread has ended
[2025-07-26 15:41:21] 2025-07-26 19:41:20,154 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:41:21] 2025-07-26 19:41:20,177 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:41:21] 2025-07-26 19:41:20,200 [wrapper] pilotpid: 265119
[2025-07-26 15:41:21] 2025-07-26 19:41:20,226 [wrapper] Pilot exit status: 0
[2025-07-26 15:41:21] 2025-07-26 19:41:20,334 [wrapper] pandaids: 6744979016
[2025-07-26 15:41:21] 2025-07-26 19:41:20,724 [wrapper] cleanup supervisor_pilot  689652 265120
[2025-07-26 15:41:21] 2025-07-26 19:41:20,738 [wrapper] Test setup, not cleaning
[2025-07-26 15:41:21] 2025-07-26 19:41:20,764 [wrapper] apfmon messages muted
[2025-07-26 15:41:21] 2025-07-26 19:41:20,769 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:41:21] 2025-07-26 19:41:20,772 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:41:21]  *** Error codes and diagnostics ***
[2025-07-26 15:41:21]     "exeErrorCode": 0,
[2025-07-26 15:41:21]     "exeErrorDiag": "",
[2025-07-26 15:41:21]     "pilotErrorCode": 0,
[2025-07-26 15:41:21]     "pilotErrorDiag": "",
[2025-07-26 15:41:21]  *** Listing of results directory ***
[2025-07-26 15:41:21] total 350608
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 05:16 pilot3.tar.gz
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 05:26 queuedata.json
[2025-07-26 15:41:21] -rwx------. 1 boincer umatlas     36292 Jul 25 05:27 runpilot2-wrapper.sh
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas       100 Jul 26 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:41:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 14:02 run_atlas
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas       105 Jul 26 14:02 job.xml
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas 146823785 Jul 26 14:02 EVNT.45743347._000993.pool.root.1
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:02 start_atlas.sh
[2025-07-26 15:41:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 14:02 shared
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 14:02 input.tar.gz
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas         0 Jul 26 14:02 boinc_lockfile
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 14:02 pandaJob.out
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas    980125 Jul 26 14:04 agis_schedconf.cvmfs.json
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas   1593052 Jul 26 14:04 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:41:21] drwx------. 4 boincer umatlas      4096 Jul 26 14:04 pilot3
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas      7161 Jul 26 15:36 init_data.xml
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas 206666194 Jul 26 15:39 HITS.45743349._019123.pool.root.1
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas       530 Jul 26 15:39 boinc_task_state.xml
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas      1033 Jul 26 15:40 memory_monitor_summary.json
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas    306303 Jul 26 15:40 log.45743349._019123.job.log.tgz.1
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas        95 Jul 26 15:40 pilot_heartbeat.json
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas      7766 Jul 26 15:40 heartbeat.json
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas       822 Jul 26 15:41 pilotlog.txt
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 15:41 boinc_mmap_file
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas        27 Jul 26 15:41 wrapper_checkpoint.txt
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas    520542 Jul 26 15:41 log.45743349._019123.job.log.1
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas       357 Jul 26 15:41 output.list
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas       620 Jul 26 15:41 runtime_log
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas    849920 Jul 26 15:41 result.tar.gz
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas       651 Jul 26 15:41 sJYKDmAtTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvCPLDmoMhZHo.diag
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas      8650 Jul 26 15:41 runtime_log.err
[2025-07-26 15:41:21] -rw-r--r--. 1 boincer umatlas     22436 Jul 26 15:41 stderr.txt
[2025-07-26 15:41:21] HITS file was successfully produced:
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas 206666194 Jul 26 15:39 shared/HITS.pool.root.1
[2025-07-26 15:41:21]  *** Contents of shared directory: ***
[2025-07-26 15:41:21] total 346592
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas 146823785 Jul 26 14:02 ATLAS.root_0
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:02 start_atlas.sh
[2025-07-26 15:41:21] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 14:02 input.tar.gz
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas 206666194 Jul 26 15:39 HITS.pool.root.1
[2025-07-26 15:41:21] -rw-------. 1 boincer umatlas    849920 Jul 26 15:41 result.tar.gz
15:41:22 (260350): run_atlas exited; CPU time 28348.507965
15:41:22 (260350): called boinc_finish(0)

</stderr_txt>
]]>

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