Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:13:14 (1562931): wrapper (7.7.26015): starting
15:13:14 (1562931): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 15:13:14] Arguments: --nthreads 12
[2025-07-26 15:13:14] Threads: 12
[2025-07-26 15:13:14] Checking for CVMFS
[2025-07-26 15:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:13:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:13:15] 2.13.0.0 842134 17329 354368 148786 1 176 32097705 32935936 12153 16776704 0 39392510 99.702 70339843 32696 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 15:13:15] CVMFS is ok
[2025-07-26 15:13:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:13:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:13:15] Further information can be found at the LHC@home message board.
[2025-07-26 15:13:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:13:15] Checking for apptainer binary...
[2025-07-26 15:13:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:13:15] Running /usr/bin/apptainer --version
[2025-07-26 15:13:15] apptainer version 1.4.1-1.el9
[2025-07-26 15:13:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:13:15] c6-5-37-2.aglt2.org
[2025-07-26 15:13:15] apptainer works
[2025-07-26 15:13:15] Set ATHENA_PROC_NUMBER=12
[2025-07-26 15:13:15] Set ATHENA_CORE_NUMBER=12
[2025-07-26 15:13:15] Starting ATLAS job with PandaID=6745097470
[2025-07-26 15:13:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:35:46]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:35:46]  is_tar=False
[2025-07-26 16:35:46]  lfn=log.45743349._032702.job.log.tgz.1
[2025-07-26 16:35:46]  mtime=0
[2025-07-26 16:35:46]  protocol_id=None
[2025-07-26 16:35:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 16:35:46]  replicas=None
[2025-07-26 16:35:46]  scope=mc23_13p6TeV
[2025-07-26 16:35:46]  status=None
[2025-07-26 16:35:46]  status_code=0
[2025-07-26 16:35:46]  storage_token=
[2025-07-26 16:35:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745097470/log.45743349._032702.job.log.tgz.1
[2025-07-26 16:35:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/28/log.45743349._032702.job.log.tgz.1
[2025-07-26 16:35:46]  workdir=None
[2025-07-26 16:35:46] ]
[2025-07-26 16:35:46] 2025-07-26 20:35:07,426 | INFO     | transferring file log.45743349._032702.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745097470/log.45743349._032702.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 16:35:46] 2025-07-26 20:35:07,426 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745097470/log.45743349._032702.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._032702.job
[2025-07-26 16:35:46] 2025-07-26 20:35:07,446 | INFO     | adding to output.list: log.45743349._032702.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/28/log.45743349._032702.job.log.tg
[2025-07-26 16:35:46] 2025-07-26 20:35:07,447 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:35:46] 2025-07-26 20:35:07,447 | INFO     | summary of transferred files:
[2025-07-26 16:35:46] 2025-07-26 20:35:07,447 | INFO     |  -- lfn=log.45743349._032702.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:35:46] 2025-07-26 20:35:07,447 | INFO     | stage-out finished correctly
[2025-07-26 16:35:46] 2025-07-26 20:35:07,524 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:35:46] 2025-07-26 20:35:07,597 | INFO     | job 6745097470 has state=finished
[2025-07-26 16:35:46] 2025-07-26 20:35:07,597 | INFO     | preparing for final server update for job 6745097470 in state='finished'
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | job 6745097470 has finished - writing final server update
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:35:46] 2025-07-26 20:35:07,598 | INFO     | executing command: lscpu
[2025-07-26 16:35:46] 2025-07-26 20:35:07,659 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:35:46] 2025-07-26 20:35:12,982 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 16:35:46] 2025-07-26 20:35:12,990 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2590.751696428572
[2025-07-26 16:35:46] 2025-07-26 20:35:12,998 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745097470/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:35:46] 2025-07-26 20:35:12,999 | INFO     | extracted standard info from prmon json
[2025-07-26 16:35:46] 2025-07-26 20:35:12,999 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:35:46] 2025-07-26 20:35:13,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:35:46] 2025-07-26 20:35:13,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:35:46] 2025-07-26 20:35:13,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:35:46] 2025-07-26 20:35:13,001 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:35:46] 2025-07-26 20:35:13,001 | INFO     | sum of square deviations: 120590052.32876703
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | sum of deviations: -1329867533.1643834
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | mean x: 1753559734.0958905
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | mean y: 2479660.4520547944
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | -- intersect: 19340742749.356857
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | intersect: 19340742749.356857
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | chi2: 0.07749777160398023
[2025-07-26 16:35:46] 2025-07-26 20:35:13,002 | INFO     | -- intersect: 19340742749.356857
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | current memory leak: -11.03 B/s (using 73 data points, chi2=0.08)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | could have reported an average CPU frequency of 2742 MHz (6 samples)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | ..............................
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . Timing measurements:
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . get job = 0 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . initial setup = 2 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . payload setup = 6 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . stage-in = 0 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . payload execution = 4875 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . stage-out = 0 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | . log creation = 0 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,003 | INFO     | ..............................
[2025-07-26 16:35:46] 2025-07-26 20:35:13,100 | INFO     | 
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | job summary report
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | --------------------------------------------------
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | PanDA job id: 6745097470
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | task id: 45743349
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | errors: (none)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:35:46] 2025-07-26 20:35:13,101 | INFO     | pilot state: finished 
[2025-07-26 16:35:46] 2025-07-26 20:35:13,103 | INFO     | transexitcode: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:13,103 | INFO     | exeerrorcode: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:13,103 | INFO     | exeerrordiag: 
[2025-07-26 16:35:46] 2025-07-26 20:35:13,103 | INFO     | exitcode: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:13,103 | INFO     | exitmsg: OK
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | cpuconsumptiontime: 46450 s
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | nevents: 400
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | neventsw: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | pid: 1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | pgrp: 1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | corecount: 12
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | event service: False
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 4886: 2424207, 4887: 2433389, 4892: 2433527}
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | --------------------------------------------------
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | 
[2025-07-26 16:35:46] 2025-07-26 20:35:13,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:35:46] 2025-07-26 20:35:13,152 | INFO     | job 6745097470 has completed (purged errors)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,153 | INFO     | overall cleanup function is called
[2025-07-26 16:35:46] 2025-07-26 20:35:13,357 | WARNING  | process 1574338 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 16:35:46] 2025-07-26 20:35:13,598 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:35:46] 2025-07-26 20:35:13,877 | INFO     | number of running child processes to parent process 1574338: 1
[2025-07-26 16:35:46] 2025-07-26 20:35:13,877 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:35:46] 2025-07-26 20:35:13,877 | INFO     | aborting job monitoring since job object (job id=6745097470) has expired
[2025-07-26 16:35:46] 2025-07-26 20:35:14,164 | INFO     | --- collectZombieJob: --- 10, [1574338]
[2025-07-26 16:35:46] 2025-07-26 20:35:14,164 | INFO     | zombie collector waiting for pid 1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:14,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:35:46] 2025-07-26 20:35:14,165 | INFO     | collected zombie processes
[2025-07-26 16:35:46] 2025-07-26 20:35:14,165 | INFO     | will attempt to kill all subprocesses of pid=1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:14,399 | INFO     | process IDs to be killed: [1574338] (in reverse order)
[2025-07-26 16:35:46] 2025-07-26 20:35:14,490 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:35:46] 2025-07-26 20:35:14,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:35:46] 2025-07-26 20:35:14,503 | INFO     | did not find any defunct processes belonging to 1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:14,517 | INFO     | did not find any defunct processes belonging to 1574338
[2025-07-26 16:35:46] 2025-07-26 20:35:14,517 | INFO     | ready for new job
[2025-07-26 16:35:46] 2025-07-26 20:35:14,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:35:46] 2025-07-26 20:35:14,521 | INFO     | ***************************************
[2025-07-26 16:35:46] 2025-07-26 20:35:14,521 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:35:46] 2025-07-26 20:35:14,521 | INFO     | ***************************************
[2025-07-26 16:35:46] 2025-07-26 20:35:14,521 | INFO     | 
[2025-07-26 16:35:46] 2025-07-26 20:35:14,537 | INFO     | architecture information:
[2025-07-26 16:35:46] 2025-07-26 20:35:14,538 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:35:46] 2025-07-26 20:35:14,557 | INFO     | cat /etc/os-release:
[2025-07-26 16:35:46] NAME="CentOS Linux"
[2025-07-26 16:35:46] VERSION="7 (Core)"
[2025-07-26 16:35:46] ID="centos"
[2025-07-26 16:35:46] ID_LIKE="rhel fedora"
[2025-07-26 16:35:46] VERSION_ID="7"
[2025-07-26 16:35:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:35:46] ANSI_COLOR="0;31"
[2025-07-26 16:35:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:35:46] HOME_URL="https://www.centos.org/"
[2025-07-26 16:35:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:35:46] 
[2025-07-26 16:35:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:35:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:35:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:35:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:35:46] 
[2025-07-26 16:35:46] 2025-07-26 20:35:14,558 | INFO     | ***************************************
[2025-07-26 16:35:46] 2025-07-26 20:35:15,061 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 16:35:46] 2025-07-26 20:35:15,079 | INFO     | sufficient remaining disk space (76447481856 B)
[2025-07-26 16:35:46] 2025-07-26 20:35:15,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:35:46] 2025-07-26 20:35:15,080 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:35:46] 2025-07-26 20:35:15,080 | INFO     | update_server=False
[2025-07-26 16:35:46] 2025-07-26 20:35:15,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:35:46] 2025-07-26 20:35:15,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:35:46] 2025-07-26 20:35:15,081 | INFO     | aborting loop
[2025-07-26 16:35:46] 2025-07-26 20:35:15,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:35:46] 2025-07-26 20:35:15,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:35:46] 2025-07-26 20:35:16,085 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,086 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,087 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,119 | INFO     | all payload control threads have been joined
[2025-07-26 16:35:46] 2025-07-26 20:35:16,134 | INFO     | all data control threads have been joined
[2025-07-26 16:35:46] 2025-07-26 20:35:16,233 | INFO     | [job] validate thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,315 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,428 | INFO     | all job control threads have been joined
[2025-07-26 16:35:46] 2025-07-26 20:35:16,613 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:16,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,024 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,124 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,125 | INFO     | [payload] control thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,139 | INFO     | [data] control thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,258 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,297 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,433 | INFO     | [job] control thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:17,549 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:18,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:35:46] 2025-07-26 20:35:22,116 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:35:46] 2025-07-26 20:35:22,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682800265024)>', '<ExcThread(monitor, started 140682308081408)>']
[2025-07-26 16:35:46] 2025-07-26 20:35:27,479 | INFO     | all workflow threads have been joined
[2025-07-26 16:35:46] 2025-07-26 20:35:27,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:35:46] 2025-07-26 20:35:27,480 | INFO     | traces error code: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:27,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:35:46] 2025-07-26 20:35:46,000 | INFO     | PID=1567213 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | INFO     | .. there are 13 such processes running
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 16:35:46] 2025-07-26 20:35:46,001 | INFO     | [monitor] control thread has ended
[2025-07-26 16:35:46] 2025-07-26 20:35:46,187 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:35:46] 2025-07-26 20:35:46,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:35:46] 2025-07-26 20:35:46,196 [wrapper] pilotpid: 1567213
[2025-07-26 16:35:46] 2025-07-26 20:35:46,201 [wrapper] Pilot exit status: 0
[2025-07-26 16:35:46] 2025-07-26 20:35:46,217 [wrapper] pandaids: 6745097470
[2025-07-26 16:35:46] 2025-07-26 20:35:46,302 [wrapper] cleanup supervisor_pilot 1757891 1567214
[2025-07-26 16:35:46] 2025-07-26 20:35:46,306 [wrapper] Test setup, not cleaning
[2025-07-26 16:35:46] 2025-07-26 20:35:46,311 [wrapper] apfmon messages muted
[2025-07-26 16:35:46] 2025-07-26 20:35:46,318 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:35:46] 2025-07-26 20:35:46,323 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:35:46]  *** Error codes and diagnostics ***
[2025-07-26 16:35:46]     "exeErrorCode": 0,
[2025-07-26 16:35:46]     "exeErrorDiag": "",
[2025-07-26 16:35:46]     "pilotErrorCode": 0,
[2025-07-26 16:35:46]     "pilotErrorDiag": "",
[2025-07-26 16:35:46]  *** Listing of results directory ***
[2025-07-26 16:35:46] total 355684
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 01:25 pilot3.tar.gz
[2025-07-26 16:35:46] -rwx------. 1 boincer umatlas     36292 Jul 26 01:26 runpilot2-wrapper.sh
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 01:26 queuedata.json
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas       100 Jul 26 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:35:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 15:13 run_atlas
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas       105 Jul 26 15:13 job.xml
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas 147741188 Jul 26 15:13 EVNT.45743347._001842.pool.root.1
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:13 start_atlas.sh
[2025-07-26 16:35:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 15:13 shared
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 15:13 input.tar.gz
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas         0 Jul 26 15:13 boinc_lockfile
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 15:13 pandaJob.out
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas    980125 Jul 26 15:13 agis_schedconf.cvmfs.json
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:13 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:35:46] drwx------. 4 boincer umatlas      4096 Jul 26 15:13 pilot3
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas      6843 Jul 26 16:28 init_data.xml
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas 210899336 Jul 26 16:34 HITS.45743349._032702.pool.root.1
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas       530 Jul 26 16:34 boinc_task_state.xml
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas        95 Jul 26 16:34 pilot_heartbeat.json
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas      1040 Jul 26 16:35 memory_monitor_summary.json
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas    371329 Jul 26 16:35 log.45743349._032702.job.log.tgz.1
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas      7818 Jul 26 16:35 heartbeat.json
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 16:35 boinc_mmap_file
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas        27 Jul 26 16:35 wrapper_checkpoint.txt
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas       893 Jul 26 16:35 pilotlog.txt
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas    479396 Jul 26 16:35 log.45743349._032702.job.log.1
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas       357 Jul 26 16:35 output.list
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas       620 Jul 26 16:35 runtime_log
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas    870400 Jul 26 16:35 result.tar.gz
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas       654 Jul 26 16:35 z4mKDm7bmz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrKRLDm5dbdln.diag
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 16:35 runtime_log.err
[2025-07-26 16:35:46] -rw-r--r--. 1 boincer umatlas     21571 Jul 26 16:35 stderr.txt
[2025-07-26 16:35:46] HITS file was successfully produced:
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas 210899336 Jul 26 16:34 shared/HITS.pool.root.1
[2025-07-26 16:35:46]  *** Contents of shared directory: ***
[2025-07-26 16:35:46] total 351644
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas 147741188 Jul 26 15:13 ATLAS.root_0
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:13 start_atlas.sh
[2025-07-26 16:35:46] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 15:13 input.tar.gz
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas 210899336 Jul 26 16:34 HITS.pool.root.1
[2025-07-26 16:35:46] -rw-------. 1 boincer umatlas    870400 Jul 26 16:35 result.tar.gz
16:36:08 (1562931): run_atlas exited; CPU time 46524.555684
16:36:08 (1562931): called boinc_finish(0)

</stderr_txt>
]]>

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