Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:19:13 (95587): wrapper (7.7.26015): starting
13:19:13 (95587): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 13:19:13] Arguments: --nthreads 8
[2025-07-26 13:19:13] Threads: 8
[2025-07-26 13:19:13] Checking for CVMFS
[2025-07-26 13:19:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:19:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:19:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:19:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:19:14] 2.13.0.0 1923533 18515 290768 148784 3 105 29386175 32935936 20311 16776704 0 87190712 99.553 140447610 19498 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 13:19:14] CVMFS is ok
[2025-07-26 13:19:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:19:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 13:19:14] Further information can be found at the LHC@home message board.
[2025-07-26 13:19:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:19:14] Checking for apptainer binary...
[2025-07-26 13:19:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 13:19:14] Running /usr/bin/apptainer --version
[2025-07-26 13:19:14] apptainer version 1.4.1-1.el9
[2025-07-26 13:19:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:19:14] c7-3-17.aglt2.org
[2025-07-26 13:19:14] apptainer works
[2025-07-26 13:19:14] Set ATHENA_PROC_NUMBER=8
[2025-07-26 13:19:14] Set ATHENA_CORE_NUMBER=8
[2025-07-26 13:19:14] Starting ATLAS job with PandaID=6745185535
[2025-07-26 13:19:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:52:36]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:52:36]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745185535/log.45743349._037480.job.log.tgz.1
[2025-07-26 14:52:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/ce/log.45743349._037480.job.log.tgz.1
[2025-07-26 14:52:36]  workdir=None
[2025-07-26 14:52:36] ]
[2025-07-26 14:52:36] 2025-07-26 18:51:48,825 | INFO     | transferring file log.45743349._037480.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745185535/log.45743349._037480.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 14:52:36] 2025-07-26 18:51:48,825 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745185535/log.45743349._037480.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._037480.job
[2025-07-26 14:52:36] 2025-07-26 18:51:48,877 | INFO     | adding to output.list: log.45743349._037480.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/ce/log.45743349._037480.job.log.tg
[2025-07-26 14:52:36] 2025-07-26 18:51:48,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 14:52:36] 2025-07-26 18:51:48,877 | INFO     | summary of transferred files:
[2025-07-26 14:52:36] 2025-07-26 18:51:48,877 | INFO     |  -- lfn=log.45743349._037480.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 14:52:36] 2025-07-26 18:51:48,878 | INFO     | stage-out finished correctly
[2025-07-26 14:52:36] 2025-07-26 18:51:49,266 | INFO     | PID=99494 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 14:52:36] 2025-07-26 18:51:49,267 | INFO     | .. there are 25 such processes running
[2025-07-26 14:52:36] 2025-07-26 18:51:50,535 | INFO     | monitor loop #379: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:51:50,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:51:50,840 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 14:52:36] 2025-07-26 18:51:51,260 | INFO     | job 6745185535 has state=finished
[2025-07-26 14:52:36] 2025-07-26 18:51:51,261 | INFO     | preparing for final server update for job 6745185535 in state='finished'
[2025-07-26 14:52:36] 2025-07-26 18:51:51,261 | INFO     | this job has now completed (state=finished)
[2025-07-26 14:52:36] 2025-07-26 18:51:51,261 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 14:52:36] 2025-07-26 18:51:51,261 | INFO     | log transfer has been attempted: DONE
[2025-07-26 14:52:36] 2025-07-26 18:51:51,261 | INFO     | job 6745185535 has finished - writing final server update
[2025-07-26 14:52:36] 2025-07-26 18:51:51,262 | INFO     | total number of processed events: 400 (read)
[2025-07-26 14:52:36] 2025-07-26 18:51:51,265 | INFO     | executing command: lscpu
[2025-07-26 14:52:36] 2025-07-26 18:51:51,359 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 14:52:36] 2025-07-26 18:51:53,044 | INFO     | monitor loop #380: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:51:53,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:51:55,558 | INFO     | monitor loop #381: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:51:55,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:51:58,063 | INFO     | monitor loop #382: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:51:58,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:52:00,572 | INFO     | monitor loop #383: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:52:00,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,095 | INFO     | monitor loop #384: job 0:6745185535 is in state 'finished'
[2025-07-26 14:52:36] 2025-07-26 18:52:03,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,746 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 14:52:36] 2025-07-26 18:52:03,757 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3025.5551770833335
[2025-07-26 14:52:36] 2025-07-26 18:52:03,787 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745185535/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,788 | INFO     | extracted standard info from prmon json
[2025-07-26 14:52:36] 2025-07-26 18:52:03,788 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 14:52:36] 2025-07-26 18:52:03,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 14:52:36] 2025-07-26 18:52:03,789 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:52:36] 2025-07-26 18:52:03,789 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:52:36] 2025-07-26 18:52:03,791 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:52:36] 2025-07-26 18:52:03,791 | INFO     | sum of square deviations: 177275882.0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,795 | INFO     | sum of deviations: -11225409405.0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | mean x: 1753553269.0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | mean y: 2268235.1566265062
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | -- intersect: 111040234234.39557
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | intersect: 111040234234.39557
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | chi2: 0.07779159497467573
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | -- intersect: 111040234234.39557
[2025-07-26 14:52:36] 2025-07-26 18:52:03,796 | INFO     | current memory leak: -63.32 B/s (using 83 data points, chi2=0.08)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | could have reported an average CPU frequency of 2944 MHz (7 samples)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | ..............................
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . Timing measurements:
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . get job = 0 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . initial setup = 3 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . payload setup = 24 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . stage-in = 0 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,797 | INFO     | . payload execution = 5453 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,798 | INFO     | . stage-out = 1 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,798 | INFO     | . log creation = 0 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,798 | INFO     | ..............................
[2025-07-26 14:52:36] 2025-07-26 18:52:03,925 | INFO     | 
[2025-07-26 14:52:36] 2025-07-26 18:52:03,925 | INFO     | job summary report
[2025-07-26 14:52:36] 2025-07-26 18:52:03,925 | INFO     | --------------------------------------------------
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | PanDA job id: 6745185535
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | task id: 45743349
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | errors: (none)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | pilot state: finished 
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | transexitcode: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | exeerrorcode: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,926 | INFO     | exeerrordiag: 
[2025-07-26 14:52:36] 2025-07-26 18:52:03,942 | INFO     | exitcode: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | exitmsg: OK
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | cpuconsumptiontime: 38400 s
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | nevents: 400
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | neventsw: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | pid: 110819
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | pgrp: 110819
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | corecount: 8
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | event service: False
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | sizes: {0: 2396646, 1: 2397331, 2: 2397530, 13: 2397530, 18: 2397848, 23: 2397876, 5482: 2424543, 5484: 2433541, 5486: 2433597, 5499: 2433791}
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | --------------------------------------------------
[2025-07-26 14:52:36] 2025-07-26 18:52:03,943 | INFO     | 
[2025-07-26 14:52:36] 2025-07-26 18:52:03,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 14:52:36] 2025-07-26 18:52:03,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,976 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | job 6745185535 has completed (purged errors)
[2025-07-26 14:52:36] 2025-07-26 18:52:03,978 | INFO     | overall cleanup function is called
[2025-07-26 14:52:36] 2025-07-26 18:52:04,988 | INFO     | --- collectZombieJob: --- 10, [110819]
[2025-07-26 14:52:36] 2025-07-26 18:52:04,989 | INFO     | zombie collector waiting for pid 110819
[2025-07-26 14:52:36] 2025-07-26 18:52:04,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:52:36] 2025-07-26 18:52:04,989 | INFO     | collected zombie processes
[2025-07-26 14:52:36] 2025-07-26 18:52:04,989 | INFO     | will attempt to kill all subprocesses of pid=110819
[2025-07-26 14:52:36] 2025-07-26 18:52:05,846 | INFO     | process IDs to be killed: [110819] (in reverse order)
[2025-07-26 14:52:36] 2025-07-26 18:52:06,054 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:52:36] 2025-07-26 18:52:06,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:52:36] 2025-07-26 18:52:06,106 | INFO     | did not find any defunct processes belonging to 110819
[2025-07-26 14:52:36] 2025-07-26 18:52:06,140 | INFO     | did not find any defunct processes belonging to 110819
[2025-07-26 14:52:36] 2025-07-26 18:52:06,144 | INFO     | ready for new job
[2025-07-26 14:52:36] 2025-07-26 18:52:06,145 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:52:36] 2025-07-26 18:52:06,146 | INFO     | ***************************************
[2025-07-26 14:52:36] 2025-07-26 18:52:06,147 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:52:36] 2025-07-26 18:52:06,147 | INFO     | ***************************************
[2025-07-26 14:52:36] 2025-07-26 18:52:06,147 | INFO     | 
[2025-07-26 14:52:36] 2025-07-26 18:52:06,169 | INFO     | architecture information:
[2025-07-26 14:52:36] 2025-07-26 18:52:06,177 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:52:36] 2025-07-26 18:52:06,209 | INFO     | cat /etc/os-release:
[2025-07-26 14:52:36] NAME="CentOS Linux"
[2025-07-26 14:52:36] VERSION="7 (Core)"
[2025-07-26 14:52:36] ID="centos"
[2025-07-26 14:52:36] ID_LIKE="rhel fedora"
[2025-07-26 14:52:36] VERSION_ID="7"
[2025-07-26 14:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:52:36] ANSI_COLOR="0;31"
[2025-07-26 14:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:52:36] HOME_URL="https://www.centos.org/"
[2025-07-26 14:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:52:36] 
[2025-07-26 14:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:52:36] 
[2025-07-26 14:52:36] 2025-07-26 18:52:06,210 | INFO     | ***************************************
[2025-07-26 14:52:36] 2025-07-26 18:52:06,713 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 14:52:36] 2025-07-26 18:52:06,759 | INFO     | sufficient remaining disk space (76037488640 B)
[2025-07-26 14:52:36] 2025-07-26 18:52:06,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:52:36] 2025-07-26 18:52:06,760 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:52:36] 2025-07-26 18:52:06,760 | INFO     | update_server=False
[2025-07-26 14:52:36] 2025-07-26 18:52:06,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:52:36] 2025-07-26 18:52:06,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:52:36] 2025-07-26 18:52:06,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:52:36] 2025-07-26 18:52:06,764 | INFO     | aborting loop
[2025-07-26 14:52:36] 2025-07-26 18:52:06,816 | INFO     | all payload control threads have been joined
[2025-07-26 14:52:36] 2025-07-26 18:52:06,917 | INFO     | all job control threads have been joined
[2025-07-26 14:52:36] 2025-07-26 18:52:07,110 | INFO     | all data control threads have been joined
[2025-07-26 14:52:36] 2025-07-26 18:52:07,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:52:36] 2025-07-26 18:52:07,766 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:07,770 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:07,792 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:07,822 | INFO     | [payload] control thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:07,863 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:07,923 | INFO     | [job] control thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:08,116 | INFO     | [data] control thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:08,639 | INFO     | [job] validate thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:08,708 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:08,852 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:08,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:52:36] 2025-07-26 18:52:09,057 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:09,146 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:09,258 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:09,950 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:10,769 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:16,943 | INFO     | job.realtimelogging is not enabled
[2025-07-26 14:52:36] 2025-07-26 18:52:17,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:52:36] 2025-07-26 18:52:19,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913537800000)>', '<ExcThread(monitor, started 139912913348352)>']
[2025-07-26 14:52:36] 2025-07-26 18:52:24,465 | INFO     | all workflow threads have been joined
[2025-07-26 14:52:36] 2025-07-26 18:52:24,471 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:52:36] 2025-07-26 18:52:24,472 | INFO     | traces error code: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:24,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:52:36] 2025-07-26 18:52:36,090 | INFO     | PID=99494 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 14:52:36] 2025-07-26 18:52:36,090 | INFO     | .. there are 25 such processes running
[2025-07-26 14:52:36] 2025-07-26 18:52:36,091 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:52:36] 2025-07-26 18:52:36,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:52:36] 2025-07-26 18:52:36,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:52:36] 2025-07-26 18:52:36,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:52:36] 2025-07-26 18:52:36,091 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 14:52:36] 2025-07-26 18:52:36,092 | INFO     | [monitor] control thread has ended
[2025-07-26 14:52:36] 2025-07-26 18:52:36,245 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:52:36] 2025-07-26 18:52:36,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:52:36] 2025-07-26 18:52:36,272 [wrapper] pilotpid: 99494
[2025-07-26 14:52:36] 2025-07-26 18:52:36,282 [wrapper] Pilot exit status: 0
[2025-07-26 14:52:36] 2025-07-26 18:52:36,363 [wrapper] pandaids: 6745185535
[2025-07-26 14:52:36] 2025-07-26 18:52:36,541 [wrapper] cleanup supervisor_pilot  463214 99495
[2025-07-26 14:52:36] 2025-07-26 18:52:36,546 [wrapper] Test setup, not cleaning
[2025-07-26 14:52:36] 2025-07-26 18:52:36,555 [wrapper] apfmon messages muted
[2025-07-26 14:52:36] 2025-07-26 18:52:36,559 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:52:36] 2025-07-26 18:52:36,562 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:52:36]  *** Error codes and diagnostics ***
[2025-07-26 14:52:36]     "exeErrorCode": 0,
[2025-07-26 14:52:36]     "exeErrorDiag": "",
[2025-07-26 14:52:36]     "pilotErrorCode": 0,
[2025-07-26 14:52:36]     "pilotErrorDiag": "",
[2025-07-26 14:52:36]  *** Listing of results directory ***
[2025-07-26 14:52:36] total 347436
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 07:39 pilot3.tar.gz
[2025-07-26 14:52:36] -rwx------. 1 boincer umatlas     36292 Jul 26 08:00 runpilot2-wrapper.sh
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 08:00 queuedata.json
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas       100 Jul 26 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:52:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 13:19 run_atlas
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas       105 Jul 26 13:19 job.xml
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas 146090436 Jul 26 13:19 EVNT.45743347._002141.pool.root.1
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:19 start_atlas.sh
[2025-07-26 14:52:36] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 13:19 shared
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 13:19 input.tar.gz
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas         0 Jul 26 13:19 boinc_lockfile
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 13:19 pandaJob.out
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas    980125 Jul 26 13:19 agis_schedconf.cvmfs.json
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas   1593052 Jul 26 13:19 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:52:36] drwx------. 4 boincer umatlas      4096 Jul 26 13:19 pilot3
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas      6931 Jul 26 14:47 init_data.xml
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas 204155766 Jul 26 14:51 HITS.45743349._037480.pool.root.1
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas       529 Jul 26 14:51 boinc_task_state.xml
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas      1029 Jul 26 14:51 memory_monitor_summary.json
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas    314615 Jul 26 14:51 log.45743349._037480.job.log.tgz.1
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas      7772 Jul 26 14:52 heartbeat.json
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas        27 Jul 26 14:52 wrapper_checkpoint.txt
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 14:52 boinc_mmap_file
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas        95 Jul 26 14:52 pilot_heartbeat.json
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas       891 Jul 26 14:52 pilotlog.txt
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas    511690 Jul 26 14:52 log.45743349._037480.job.log.1
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas       357 Jul 26 14:52 output.list
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas       620 Jul 26 14:52 runtime_log
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas    849920 Jul 26 14:52 result.tar.gz
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 14:52 runtime_log.err
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas       651 Jul 26 14:52 iAoKDmpksz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS3RLDmkIPjxn.diag
[2025-07-26 14:52:36] -rw-r--r--. 1 boincer umatlas     22393 Jul 26 14:52 stderr.txt
[2025-07-26 14:52:36] HITS file was successfully produced:
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas 204155766 Jul 26 14:51 shared/HITS.pool.root.1
[2025-07-26 14:52:36]  *** Contents of shared directory: ***
[2025-07-26 14:52:36] total 343424
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas 146090436 Jul 26 13:19 ATLAS.root_0
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:19 start_atlas.sh
[2025-07-26 14:52:36] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 13:19 input.tar.gz
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas 204155766 Jul 26 14:51 HITS.pool.root.1
[2025-07-26 14:52:36] -rw-------. 1 boincer umatlas    849920 Jul 26 14:52 result.tar.gz
14:52:38 (95587): run_atlas exited; CPU time 38586.757233
14:52:38 (95587): called boinc_finish(0)

</stderr_txt>
]]>

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