Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:32:52 (3941285): wrapper (7.7.26015): starting
13:32:52 (3941285): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 13:32:52] Arguments: --nthreads 8
[2025-07-26 13:32:52] Threads: 8
[2025-07-26 13:32:52] Checking for CVMFS
[2025-07-26 13:32:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:32:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:32:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:32:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:32:53] 2.13.1.0 5097 12842 192132 148784 3 196 37580519 40960001 10664 16776704 0 32278268 99.923 17609523 43583 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 13:32:53] CVMFS is ok
[2025-07-26 13:32:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:32:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 13:32:53] Further information can be found at the LHC@home message board.
[2025-07-26 13:32:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:32:53] Checking for apptainer binary...
[2025-07-26 13:32:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 13:32:53] Running /usr/bin/apptainer --version
[2025-07-26 13:32:53] apptainer version 1.4.1-1.el9
[2025-07-26 13:32:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:32:53] c-212-6.aglt2.org
[2025-07-26 13:32:53] apptainer works
[2025-07-26 13:32:53] Set ATHENA_PROC_NUMBER=8
[2025-07-26 13:32:53] Set ATHENA_CORE_NUMBER=8
[2025-07-26 13:32:53] Starting ATLAS job with PandaID=6745101836
[2025-07-26 13:32:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:55:53]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:55:53]  mtime=0
[2025-07-26 14:55:53]  protocol_id=None
[2025-07-26 14:55:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 14:55:53]  replicas=None
[2025-07-26 14:55:53]  scope=mc23_13p6TeV
[2025-07-26 14:55:53]  status=None
[2025-07-26 14:55:53]  status_code=0
[2025-07-26 14:55:53]  storage_token=
[2025-07-26 14:55:53]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745101836/log.45743349._035134.job.log.tgz.1
[2025-07-26 14:55:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/ab/log.45743349._035134.job.log.tgz.1
[2025-07-26 14:55:53]  workdir=None
[2025-07-26 14:55:53] ]
[2025-07-26 14:55:53] 2025-07-26 18:55:13,942 | INFO     | 4930s have passed since pilot start - server update state is 'RUNNING'
[2025-07-26 14:55:53] 2025-07-26 18:55:13,947 | INFO     | transferring file log.45743349._035134.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745101836/log.45743349._035134.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 14:55:53] 2025-07-26 18:55:13,947 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745101836/log.45743349._035134.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._035134.job
[2025-07-26 14:55:53] 2025-07-26 18:55:13,969 | INFO     | adding to output.list: log.45743349._035134.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/ab/log.45743349._035134.job.log.tg
[2025-07-26 14:55:53] 2025-07-26 18:55:13,970 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 14:55:53] 2025-07-26 18:55:13,970 | INFO     | summary of transferred files:
[2025-07-26 14:55:53] 2025-07-26 18:55:13,970 | INFO     |  -- lfn=log.45743349._035134.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 14:55:53] 2025-07-26 18:55:13,970 | INFO     | stage-out finished correctly
[2025-07-26 14:55:53] 2025-07-26 18:55:14,250 | INFO     | monitor loop #362: job 0:6745101836 is in state 'finished'
[2025-07-26 14:55:53] 2025-07-26 18:55:14,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:55:53] 2025-07-26 18:55:15,405 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 14:55:53] 2025-07-26 18:55:15,759 | INFO     | job 6745101836 has state=finished
[2025-07-26 14:55:53] 2025-07-26 18:55:15,759 | INFO     | preparing for final server update for job 6745101836 in state='finished'
[2025-07-26 14:55:53] 2025-07-26 18:55:15,821 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 14:55:53] 2025-07-26 18:55:15,822 | INFO     | this job has now completed (state=finished)
[2025-07-26 14:55:53] 2025-07-26 18:55:15,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 14:55:53] 2025-07-26 18:55:15,822 | INFO     | log transfer has been attempted: DONE
[2025-07-26 14:55:53] 2025-07-26 18:55:15,822 | INFO     | job 6745101836 has finished - writing final server update
[2025-07-26 14:55:53] 2025-07-26 18:55:15,823 | INFO     | total number of processed events: 400 (read)
[2025-07-26 14:55:53] 2025-07-26 18:55:15,825 | INFO     | executing command: lscpu
[2025-07-26 14:55:53] 2025-07-26 18:55:15,879 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 14:55:53] 2025-07-26 18:55:16,753 | INFO     | monitor loop #363: job 0:6745101836 is in state 'finished'
[2025-07-26 14:55:53] 2025-07-26 18:55:16,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:55:53] 2025-07-26 18:55:19,254 | INFO     | monitor loop #364: job 0:6745101836 is in state 'finished'
[2025-07-26 14:55:53] 2025-07-26 18:55:19,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,049 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 14:55:53] 2025-07-26 18:55:20,054 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3033.3023645833327
[2025-07-26 14:55:53] 2025-07-26 18:55:20,066 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745101836/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,066 | INFO     | extracted standard info from prmon json
[2025-07-26 14:55:53] 2025-07-26 18:55:20,066 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 14:55:53] 2025-07-26 18:55:20,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 14:55:53] 2025-07-26 18:55:20,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:55:53] 2025-07-26 18:55:20,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:55:53] 2025-07-26 18:55:20,068 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:55:53] 2025-07-26 18:55:20,068 | INFO     | sum of square deviations: 125630262.5
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | sum of deviations: -6508793116.499999
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | mean x: 1753553748.5
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | mean y: 2597817.1756756757
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | -- intersect: 90852671203.3518
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | intersect: 90852671203.3518
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | chi2: 0.03032553738128352
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | -- intersect: 90852671203.3518
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | current memory leak: -51.81 B/s (using 74 data points, chi2=0.03)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,069 | INFO     | could have reported an average CPU frequency of 2982 MHz (6 samples)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | ..............................
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . Timing measurements:
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . get job = 0 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . initial setup = 2 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . payload setup = 8 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . stage-in = 0 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . payload execution = 4897 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . stage-out = 0 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | . log creation = 0 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,070 | INFO     | ..............................
[2025-07-26 14:55:53] 2025-07-26 18:55:20,134 | INFO     | 
[2025-07-26 14:55:53] 2025-07-26 18:55:20,134 | INFO     | job summary report
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | --------------------------------------------------
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | PanDA job id: 6745101836
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | task id: 45743349
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | errors: (none)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | pilot state: finished 
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | transexitcode: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | exeerrorcode: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | exeerrordiag: 
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | exitcode: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | exitmsg: OK
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | cpuconsumptiontime: 36600 s
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | nevents: 400
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | neventsw: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | pid: 3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:20,135 | INFO     | pgrp: 3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | corecount: 8
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | event service: False
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | sizes: {0: 2397303, 1: 2397502, 6: 2397764, 11: 2397792, 4909: 2423960, 4911: 2432958, 4912: 2433142, 4917: 2433336}
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | --------------------------------------------------
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | 
[2025-07-26 14:55:53] 2025-07-26 18:55:20,136 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 14:55:53] 2025-07-26 18:55:20,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | job 6745101836 has completed (purged errors)
[2025-07-26 14:55:53] 2025-07-26 18:55:20,156 | INFO     | overall cleanup function is called
[2025-07-26 14:55:53] 2025-07-26 18:55:21,165 | INFO     | --- collectZombieJob: --- 10, [3951606]
[2025-07-26 14:55:53] 2025-07-26 18:55:21,165 | INFO     | zombie collector waiting for pid 3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:21,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:55:53] 2025-07-26 18:55:21,166 | INFO     | collected zombie processes
[2025-07-26 14:55:53] 2025-07-26 18:55:21,166 | INFO     | will attempt to kill all subprocesses of pid=3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:21,523 | INFO     | process IDs to be killed: [3951606] (in reverse order)
[2025-07-26 14:55:53] 2025-07-26 18:55:21,642 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:55:53] 2025-07-26 18:55:21,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:55:53] 2025-07-26 18:55:21,658 | INFO     | did not find any defunct processes belonging to 3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:21,674 | INFO     | did not find any defunct processes belonging to 3951606
[2025-07-26 14:55:53] 2025-07-26 18:55:21,674 | INFO     | ready for new job
[2025-07-26 14:55:53] 2025-07-26 18:55:21,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:55:53] 2025-07-26 18:55:21,676 | INFO     | ***************************************
[2025-07-26 14:55:53] 2025-07-26 18:55:21,676 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:55:53] 2025-07-26 18:55:21,676 | INFO     | ***************************************
[2025-07-26 14:55:53] 2025-07-26 18:55:21,676 | INFO     | 
[2025-07-26 14:55:53] 2025-07-26 18:55:21,681 | INFO     | architecture information:
[2025-07-26 14:55:53] 2025-07-26 18:55:21,681 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:55:53] 2025-07-26 18:55:21,700 | INFO     | cat /etc/os-release:
[2025-07-26 14:55:53] NAME="CentOS Linux"
[2025-07-26 14:55:53] VERSION="7 (Core)"
[2025-07-26 14:55:53] ID="centos"
[2025-07-26 14:55:53] ID_LIKE="rhel fedora"
[2025-07-26 14:55:53] VERSION_ID="7"
[2025-07-26 14:55:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:55:53] ANSI_COLOR="0;31"
[2025-07-26 14:55:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:55:53] HOME_URL="https://www.centos.org/"
[2025-07-26 14:55:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:55:53] 
[2025-07-26 14:55:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:55:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:55:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:55:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:55:53] 
[2025-07-26 14:55:53] 2025-07-26 18:55:21,700 | INFO     | ***************************************
[2025-07-26 14:55:53] 2025-07-26 18:55:22,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 14:55:53] 2025-07-26 18:55:22,217 | INFO     | sufficient remaining disk space (129037762560 B)
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | INFO     | update_server=False
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:55:53] 2025-07-26 18:55:22,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:55:53] 2025-07-26 18:55:22,423 | INFO     | all job control threads have been joined
[2025-07-26 14:55:53] 2025-07-26 18:55:22,525 | INFO     | all data control threads have been joined
[2025-07-26 14:55:53] 2025-07-26 18:55:22,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:55:53] 2025-07-26 18:55:22,761 | INFO     | aborting loop
[2025-07-26 14:55:53] 2025-07-26 18:55:22,849 | INFO     | all payload control threads have been joined
[2025-07-26 14:55:53] 2025-07-26 18:55:23,222 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,303 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,428 | INFO     | [job] control thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,446 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,534 | INFO     | [data] control thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,547 | INFO     | [job] validate thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,548 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,706 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,763 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,854 | INFO     | [payload] control thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:23,908 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:24,009 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:24,223 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:24,273 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:25,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:55:53] 2025-07-26 18:55:26,150 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:26,224 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:55:53] 2025-07-26 18:55:26,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714603353920)>', '<ExcThread(monitor, started 139714103322368)>']
[2025-07-26 14:55:53] 2025-07-26 18:55:31,998 | INFO     | all workflow threads have been joined
[2025-07-26 14:55:53] 2025-07-26 18:55:31,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:55:53] 2025-07-26 18:55:31,998 | INFO     | traces error code: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:31,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:55:53] 2025-07-26 18:55:53,571 | INFO     | PID=3944892 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 14:55:53] 2025-07-26 18:55:53,571 | INFO     | .. there are 15 such processes running
[2025-07-26 14:55:53] 2025-07-26 18:55:53,571 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:55:53] 2025-07-26 18:55:53,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:55:53] 2025-07-26 18:55:53,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:55:53] 2025-07-26 18:55:53,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:55:53] 2025-07-26 18:55:53,572 | INFO     | [monitor] control thread has ended
[2025-07-26 14:55:53] 2025-07-26 18:55:53,691 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:55:53] 2025-07-26 18:55:53,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:55:53] 2025-07-26 18:55:53,696 [wrapper] pilotpid: 3944892
[2025-07-26 14:55:53] 2025-07-26 18:55:53,698 [wrapper] Pilot exit status: 0
[2025-07-26 14:55:53] 2025-07-26 18:55:53,711 [wrapper] pandaids: 6745101836
[2025-07-26 14:55:53] 2025-07-26 18:55:53,785 [wrapper] cleanup supervisor_pilot 4104542 3944893
[2025-07-26 14:55:53] 2025-07-26 18:55:53,789 [wrapper] Test setup, not cleaning
[2025-07-26 14:55:53] 2025-07-26 18:55:53,792 [wrapper] apfmon messages muted
[2025-07-26 14:55:53] 2025-07-26 18:55:53,795 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:55:53] 2025-07-26 18:55:53,798 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:55:53]  *** Error codes and diagnostics ***
[2025-07-26 14:55:53]     "exeErrorCode": 0,
[2025-07-26 14:55:53]     "exeErrorDiag": "",
[2025-07-26 14:55:53]     "pilotErrorCode": 0,
[2025-07-26 14:55:53]     "pilotErrorDiag": "",
[2025-07-26 14:55:53]  *** Listing of results directory ***
[2025-07-26 14:55:53] total 342680
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 04:27 pilot3.tar.gz
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 04:41 queuedata.json
[2025-07-26 14:55:53] -rwx------. 1 boincer umatlas     36292 Jul 26 04:42 runpilot2-wrapper.sh
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas       100 Jul 26 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:55:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 13:32 run_atlas
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas       105 Jul 26 13:32 job.xml
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas 143961269 Jul 26 13:32 EVNT.45743347._001995.pool.root.1
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:32 start_atlas.sh
[2025-07-26 14:55:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 13:32 shared
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 13:32 input.tar.gz
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas         0 Jul 26 13:32 boinc_lockfile
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 13:32 pandaJob.out
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas    980125 Jul 26 13:33 agis_schedconf.cvmfs.json
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas   1593052 Jul 26 13:33 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:55:53] drwx------. 4 boincer umatlas      4096 Jul 26 13:33 pilot3
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas      6943 Jul 26 14:45 init_data.xml
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas 201479843 Jul 26 14:54 HITS.45743349._035134.pool.root.1
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas       529 Jul 26 14:54 boinc_task_state.xml
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas        95 Jul 26 14:55 pilot_heartbeat.json
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas      1031 Jul 26 14:55 memory_monitor_summary.json
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas    312028 Jul 26 14:55 log.45743349._035134.job.log.tgz.1
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas      7770 Jul 26 14:55 heartbeat.json
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas        27 Jul 26 14:55 wrapper_checkpoint.txt
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas       823 Jul 26 14:55 pilotlog.txt
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 14:55 boinc_mmap_file
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas    481811 Jul 26 14:55 log.45743349._035134.job.log.1
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas       357 Jul 26 14:55 output.list
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas       620 Jul 26 14:55 runtime_log
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas    808960 Jul 26 14:55 result.tar.gz
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 14:55 runtime_log.err
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas       650 Jul 26 14:55 5yaKDm7epz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTT0KDmjIeUrm.diag
[2025-07-26 14:55:53] -rw-r--r--. 1 boincer umatlas     21761 Jul 26 14:55 stderr.txt
[2025-07-26 14:55:53] HITS file was successfully produced:
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas 201479843 Jul 26 14:54 shared/HITS.pool.root.1
[2025-07-26 14:55:53]  *** Contents of shared directory: ***
[2025-07-26 14:55:53] total 338696
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas 143961269 Jul 26 13:32 ATLAS.root_0
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:32 start_atlas.sh
[2025-07-26 14:55:53] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 13:32 input.tar.gz
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas 201479843 Jul 26 14:54 HITS.pool.root.1
[2025-07-26 14:55:53] -rw-------. 1 boincer umatlas    808960 Jul 26 14:55 result.tar.gz
14:55:55 (3941285): run_atlas exited; CPU time 36718.843393
14:55:55 (3941285): called boinc_finish(0)

</stderr_txt>
]]>

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