Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:05:53 (20228): wrapper (7.7.26015): starting
13:05:53 (20228): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 13:05:53] Arguments: --nthreads 12
[2025-07-26 13:05:53] Threads: 12
[2025-07-26 13:05:53] Checking for CVMFS
[2025-07-26 13:05:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:05:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:05:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:05:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:05:53] 2.11.2.0 2937 110839 96580 148783 2 59 17960675 20275201 1 130560 0 37797192 99.971 10187080 11386 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 13:05:53] CVMFS is ok
[2025-07-26 13:05:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:05:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 13:05:53] Further information can be found at the LHC@home message board.
[2025-07-26 13:05:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:05:53] Checking for apptainer binary...
[2025-07-26 13:05:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 13:05:53] Running /usr/bin/apptainer --version
[2025-07-26 13:05:53] apptainer version 1.3.2-1.el7
[2025-07-26 13:05:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:05:55] c-205-8.aglt2.org
[2025-07-26 13:05:55] apptainer works
[2025-07-26 13:05:55] Set ATHENA_PROC_NUMBER=12
[2025-07-26 13:05:55] Set ATHENA_CORE_NUMBER=12
[2025-07-26 13:05:55] Starting ATLAS job with PandaID=6745135685
[2025-07-26 13:05:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:30:45]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:30:45]  is_tar=False
[2025-07-26 14:30:45]  lfn=log.45743349._037270.job.log.tgz.1
[2025-07-26 14:30:45]  mtime=0
[2025-07-26 14:30:45]  protocol_id=None
[2025-07-26 14:30:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 14:30:45]  replicas=None
[2025-07-26 14:30:45]  scope=mc23_13p6TeV
[2025-07-26 14:30:45]  status=None
[2025-07-26 14:30:45]  status_code=0
[2025-07-26 14:30:45]  storage_token=
[2025-07-26 14:30:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745135685/log.45743349._037270.job.log.tgz.1
[2025-07-26 14:30:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/92/log.45743349._037270.job.log.tgz.1
[2025-07-26 14:30:45]  workdir=None
[2025-07-26 14:30:45] ]
[2025-07-26 14:30:45] 2025-07-26 18:30:07,032 | INFO     | transferring file log.45743349._037270.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745135685/log.45743349._037270.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 14:30:45] 2025-07-26 18:30:07,032 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745135685/log.45743349._037270.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._037270.job
[2025-07-26 14:30:45] 2025-07-26 18:30:07,051 | INFO     | adding to output.list: log.45743349._037270.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/92/log.45743349._037270.job.log.tg
[2025-07-26 14:30:45] 2025-07-26 18:30:07,052 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 14:30:45] 2025-07-26 18:30:07,053 | INFO     | summary of transferred files:
[2025-07-26 14:30:45] 2025-07-26 18:30:07,053 | INFO     |  -- lfn=log.45743349._037270.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 14:30:45] 2025-07-26 18:30:07,053 | INFO     | stage-out finished correctly
[2025-07-26 14:30:45] 2025-07-26 18:30:07,926 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 14:30:45] 2025-07-26 18:30:08,486 | INFO     | job 6745135685 has state=finished
[2025-07-26 14:30:45] 2025-07-26 18:30:08,487 | INFO     | preparing for final server update for job 6745135685 in state='finished'
[2025-07-26 14:30:45] 2025-07-26 18:30:08,487 | INFO     | this job has now completed (state=finished)
[2025-07-26 14:30:45] 2025-07-26 18:30:08,487 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 14:30:45] 2025-07-26 18:30:08,488 | INFO     | log transfer has been attempted: DONE
[2025-07-26 14:30:45] 2025-07-26 18:30:08,488 | INFO     | job 6745135685 has finished - writing final server update
[2025-07-26 14:30:45] 2025-07-26 18:30:08,488 | INFO     | total number of processed events: 400 (read)
[2025-07-26 14:30:45] 2025-07-26 18:30:08,489 | INFO     | executing command: lscpu
[2025-07-26 14:30:45] 2025-07-26 18:30:08,514 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 14:30:45] 2025-07-26 18:30:13,125 | WARNING  | process 30339 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 14:30:45] 2025-07-26 18:30:13,125 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745135685/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,214 | INFO     | number of running child processes to parent process 30339: 1
[2025-07-26 14:30:45] 2025-07-26 18:30:13,215 | INFO     | maximum number of monitored processes: 6
[2025-07-26 14:30:45] 2025-07-26 18:30:13,590 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 14:30:45] 2025-07-26 18:30:13,594 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1762.3333333333333
[2025-07-26 14:30:45] 2025-07-26 18:30:13,596 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745135685/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,597 | INFO     | extracted standard info from prmon json
[2025-07-26 14:30:45] 2025-07-26 18:30:13,598 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 14:30:45] 2025-07-26 18:30:13,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 14:30:45] 2025-07-26 18:30:13,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:30:45] 2025-07-26 18:30:13,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:30:45] 2025-07-26 18:30:13,600 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:30:45] 2025-07-26 18:30:13,600 | INFO     | sum of square deviations: 136095575.0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | sum of deviations: 41859175.99999987
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | mean x: 1753552191.5
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | mean y: 2679774.3157894737
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | -- intersect: -536663623.2133659
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | intersect: -536663623.2133659
[2025-07-26 14:30:45] 2025-07-26 18:30:13,601 | INFO     | chi2: 0.03387984894889023
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | -- intersect: -536663623.2133659
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | current memory leak: 0.31 B/s (using 76 data points, chi2=0.03)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | ..............................
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | . Timing measurements:
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | . get job = 0 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,602 | INFO     | . initial setup = 2 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | . payload setup = 9 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | . stage-in = 0 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | . payload execution = 5008 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | . stage-out = 0 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | . log creation = 0 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,603 | INFO     | ..............................
[2025-07-26 14:30:45] 2025-07-26 18:30:13,689 | INFO     | 
[2025-07-26 14:30:45] 2025-07-26 18:30:13,689 | INFO     | job summary report
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | --------------------------------------------------
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | PanDA job id: 6745135685
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | task id: 45743349
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | errors: (none)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:30:45] 2025-07-26 18:30:13,690 | INFO     | pilot state: finished 
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | transexitcode: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | exeerrorcode: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | exeerrordiag: 
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | exitcode: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | exitmsg: OK
[2025-07-26 14:30:45] 2025-07-26 18:30:13,691 | INFO     | cpuconsumptiontime: 52701 s
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | nevents: 400
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | neventsw: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | pid: 30339
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | pgrp: 30339
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | corecount: 12
[2025-07-26 14:30:45] 2025-07-26 18:30:13,692 | INFO     | event service: False
[2025-07-26 14:30:45] 2025-07-26 18:30:13,693 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 5021: 2424099, 5022: 2433097, 5023: 2433153, 5029: 2433475}
[2025-07-26 14:30:45] 2025-07-26 18:30:13,693 | INFO     | --------------------------------------------------
[2025-07-26 14:30:45] 2025-07-26 18:30:13,693 | INFO     | 
[2025-07-26 14:30:45] 2025-07-26 18:30:13,693 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 14:30:45] 2025-07-26 18:30:13,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,721 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,722 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:30:45] 2025-07-26 18:30:13,724 | INFO     | job 6745135685 has completed (purged errors)
[2025-07-26 14:30:45] 2025-07-26 18:30:13,724 | INFO     | overall cleanup function is called
[2025-07-26 14:30:45] 2025-07-26 18:30:14,732 | INFO     | --- collectZombieJob: --- 10, [30339]
[2025-07-26 14:30:45] 2025-07-26 18:30:14,732 | INFO     | zombie collector waiting for pid 30339
[2025-07-26 14:30:45] 2025-07-26 18:30:14,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:30:45] 2025-07-26 18:30:14,733 | INFO     | collected zombie processes
[2025-07-26 14:30:45] 2025-07-26 18:30:14,733 | INFO     | will attempt to kill all subprocesses of pid=30339
[2025-07-26 14:30:45] 2025-07-26 18:30:14,823 | INFO     | process IDs to be killed: [30339] (in reverse order)
[2025-07-26 14:30:45] 2025-07-26 18:30:14,876 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:30:45] 2025-07-26 18:30:14,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:30:45] 2025-07-26 18:30:14,880 | INFO     | did not find any defunct processes belonging to 30339
[2025-07-26 14:30:45] 2025-07-26 18:30:14,882 | INFO     | did not find any defunct processes belonging to 30339
[2025-07-26 14:30:45] 2025-07-26 18:30:14,882 | INFO     | ready for new job
[2025-07-26 14:30:45] 2025-07-26 18:30:14,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:30:45] 2025-07-26 18:30:14,883 | INFO     | ***************************************
[2025-07-26 14:30:45] 2025-07-26 18:30:14,883 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:30:45] 2025-07-26 18:30:14,883 | INFO     | ***************************************
[2025-07-26 14:30:45] 2025-07-26 18:30:14,884 | INFO     | 
[2025-07-26 14:30:45] 2025-07-26 18:30:14,884 | INFO     | architecture information:
[2025-07-26 14:30:45] 2025-07-26 18:30:14,885 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:30:45] 2025-07-26 18:30:14,899 | INFO     | cat /etc/os-release:
[2025-07-26 14:30:45] NAME="CentOS Linux"
[2025-07-26 14:30:45] VERSION="7 (Core)"
[2025-07-26 14:30:45] ID="centos"
[2025-07-26 14:30:45] ID_LIKE="rhel fedora"
[2025-07-26 14:30:45] VERSION_ID="7"
[2025-07-26 14:30:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:30:45] ANSI_COLOR="0;31"
[2025-07-26 14:30:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:30:45] HOME_URL="https://www.centos.org/"
[2025-07-26 14:30:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:30:45] 
[2025-07-26 14:30:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:30:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:30:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:30:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:30:45] 
[2025-07-26 14:30:45] 2025-07-26 18:30:14,900 | INFO     | ***************************************
[2025-07-26 14:30:45] 2025-07-26 18:30:15,403 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 14:30:45] 2025-07-26 18:30:15,420 | INFO     | sufficient remaining disk space (29523705856 B)
[2025-07-26 14:30:45] 2025-07-26 18:30:15,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:30:45] 2025-07-26 18:30:15,421 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:30:45] 2025-07-26 18:30:15,421 | INFO     | update_server=False
[2025-07-26 14:30:45] 2025-07-26 18:30:15,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:30:45] 2025-07-26 18:30:15,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:30:45] 2025-07-26 18:30:15,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:30:45] 2025-07-26 18:30:15,438 | INFO     | all data control threads have been joined
[2025-07-26 14:30:45] 2025-07-26 18:30:15,716 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 14:30:45] 2025-07-26 18:30:15,716 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 14:30:45] 2025-07-26 18:30:15,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:30:45] 2025-07-26 18:30:15,717 | INFO     | will abort loop
[2025-07-26 14:30:45] 2025-07-26 18:30:15,971 | INFO     | all payload control threads have been joined
[2025-07-26 14:30:45] 2025-07-26 18:30:16,139 | INFO     | all job control threads have been joined
[2025-07-26 14:30:45] 2025-07-26 18:30:16,423 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:16,426 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:16,444 | INFO     | [data] control thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:16,722 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:16,896 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:16,974 | INFO     | [payload] control thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,144 | INFO     | [job] control thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,159 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,305 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,427 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,700 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,709 | INFO     | [job] validate thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,718 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:17,775 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:18,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:30:45] 2025-07-26 18:30:22,520 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:26,111 | INFO     | job.realtimelogging is not enabled
[2025-07-26 14:30:45] 2025-07-26 18:30:27,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:30:45] 2025-07-26 18:30:28,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857119569728)>', '<ExcThread(monitor, started 139856063747840)>']
[2025-07-26 14:30:45] 2025-07-26 18:30:33,348 | INFO     | all workflow threads have been joined
[2025-07-26 14:30:45] 2025-07-26 18:30:33,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:30:45] 2025-07-26 18:30:33,348 | INFO     | traces error code: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:33,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:30:45] 2025-07-26 18:30:45,196 | INFO     | PID=23910 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 14:30:45] 2025-07-26 18:30:45,196 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:30:45] 2025-07-26 18:30:45,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:30:45] 2025-07-26 18:30:45,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:30:45] 2025-07-26 18:30:45,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:30:45] 2025-07-26 18:30:45,197 | INFO     | [monitor] control thread has ended
[2025-07-26 14:30:45] 2025-07-26 18:30:45,289 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:30:45] 2025-07-26 18:30:45,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:30:45] 2025-07-26 18:30:45,296 [wrapper] pilotpid: 23910
[2025-07-26 14:30:45] 2025-07-26 18:30:45,300 [wrapper] Pilot exit status: 0
[2025-07-26 14:30:45] 2025-07-26 18:30:45,316 [wrapper] pandaids: 6745135685
[2025-07-26 14:30:45] 2025-07-26 18:30:45,358 [wrapper] cleanup supervisor_pilot 17538 23911
[2025-07-26 14:30:45] 2025-07-26 18:30:45,362 [wrapper] Test setup, not cleaning
[2025-07-26 14:30:45] 2025-07-26 18:30:45,365 [wrapper] apfmon messages muted
[2025-07-26 14:30:45] 2025-07-26 18:30:45,369 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:30:45] 2025-07-26 18:30:45,373 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:30:45]  *** Error codes and diagnostics ***
[2025-07-26 14:30:45]     "exeErrorCode": 0,
[2025-07-26 14:30:45]     "exeErrorDiag": "",
[2025-07-26 14:30:45]     "pilotErrorCode": 0,
[2025-07-26 14:30:45]     "pilotErrorDiag": "",
[2025-07-26 14:30:45]  *** Listing of results directory ***
[2025-07-26 14:30:45] total 346300
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 07:38 queuedata.json
[2025-07-26 14:30:45] -rwx------ 1 boincer umatlas     36292 Jul 26 07:39 runpilot2-wrapper.sh
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 07:39 pilot3.tar.gz
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas       100 Jul 26 13:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:30:45] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 13:05 run_atlas
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas       105 Jul 26 13:05 job.xml
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas 146704721 Jul 26 13:05 EVNT.45743347._002129.pool.root.1
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 13:05 start_atlas.sh
[2025-07-26 14:30:45] drwxrwx--x 2 boincer umatlas      4096 Jul 26 13:05 shared
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas    542884 Jul 26 13:05 input.tar.gz
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas         0 Jul 26 13:05 boinc_lockfile
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas      2562 Jul 26 13:05 pandaJob.out
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas    980117 Jul 26 13:06 agis_schedconf.cvmfs.json
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas   1593052 Jul 26 13:06 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:30:45] drwx------ 4 boincer umatlas      4096 Jul 26 13:06 pilot3
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas 202369957 Jul 26 14:29 HITS.45743349._037270.pool.root.1
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas       529 Jul 26 14:29 boinc_task_state.xml
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas      1061 Jul 26 14:30 memory_monitor_summary.json
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas    355338 Jul 26 14:30 log.45743349._037270.job.log.tgz.1
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas        95 Jul 26 14:30 pilot_heartbeat.json
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas      7847 Jul 26 14:30 heartbeat.json
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas      5867 Jul 26 14:30 init_data.xml
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 14:30 boinc_mmap_file
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas        27 Jul 26 14:30 wrapper_checkpoint.txt
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas       745 Jul 26 14:30 pilotlog.txt
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas    478463 Jul 26 14:30 log.45743349._037270.job.log.1
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas       357 Jul 26 14:30 output.list
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas       620 Jul 26 14:30 runtime_log
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas    849920 Jul 26 14:30 result.tar.gz
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas      8657 Jul 26 14:30 runtime_log.err
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas       658 Jul 26 14:30 rT4NDmnQsz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmn1RLDm1AxR5n.diag
[2025-07-26 14:30:45] -rw-r--r-- 1 boincer umatlas     21539 Jul 26 14:30 stderr.txt
[2025-07-26 14:30:45] HITS file was successfully produced:
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas 202369957 Jul 26 14:29 shared/HITS.pool.root.1
[2025-07-26 14:30:45]  *** Contents of shared directory: ***
[2025-07-26 14:30:45] total 342280
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas 146704721 Jul 26 13:05 ATLAS.root_0
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 13:05 start_atlas.sh
[2025-07-26 14:30:45] -rw-r--r-- 2 boincer umatlas    542884 Jul 26 13:05 input.tar.gz
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas 202369957 Jul 26 14:29 HITS.pool.root.1
[2025-07-26 14:30:45] -rw------- 1 boincer umatlas    849920 Jul 26 14:30 result.tar.gz
14:30:46 (20228): run_atlas exited; CPU time 52680.398604
14:30:46 (20228): called boinc_finish(0)

</stderr_txt>
]]>

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