Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:44:50 (396704): wrapper (7.7.26015): starting
12:44:50 (396704): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:44:50] Arguments: --nthreads 8
[2025-07-26 12:44:50] Threads: 8
[2025-07-26 12:44:50] Checking for CVMFS
[2025-07-26 12:44:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:44:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:44:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:44:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:44:51] 2.13.1.0 1173468 11753 222268 148783 3 497 35738244 40960001 13229 16776704 0 47411673 99.867 24008636 40888 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 12:44:51] CVMFS is ok
[2025-07-26 12:44:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:44:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:44:51] Further information can be found at the LHC@home message board.
[2025-07-26 12:44:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:44:51] Checking for apptainer binary...
[2025-07-26 12:44:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:44:51] Running /usr/bin/apptainer --version
[2025-07-26 12:44:51] apptainer version 1.4.1-1.el9
[2025-07-26 12:44:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:44:51] c-212-20.aglt2.org
[2025-07-26 12:44:51] apptainer works
[2025-07-26 12:44:51] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:44:51] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:44:51] Starting ATLAS job with PandaID=6745101141
[2025-07-26 12:44:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:06:57]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:06:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 14:06:57]  replicas=None
[2025-07-26 14:06:57]  scope=mc23_13p6TeV
[2025-07-26 14:06:57]  status=None
[2025-07-26 14:06:57]  status_code=0
[2025-07-26 14:06:57]  storage_token=
[2025-07-26 14:06:57]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745101141/log.45743349._034988.job.log.tgz.1
[2025-07-26 14:06:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/2d/log.45743349._034988.job.log.tgz.1
[2025-07-26 14:06:57]  workdir=None
[2025-07-26 14:06:57] ]
[2025-07-26 14:06:57] 2025-07-26 18:06:14,487 | INFO     | transferring file log.45743349._034988.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745101141/log.45743349._034988.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 14:06:57] 2025-07-26 18:06:14,487 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745101141/log.45743349._034988.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._034988.job
[2025-07-26 14:06:57] 2025-07-26 18:06:14,508 | INFO     | adding to output.list: log.45743349._034988.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/2d/log.45743349._034988.job.log.tg
[2025-07-26 14:06:57] 2025-07-26 18:06:14,509 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 14:06:57] 2025-07-26 18:06:14,509 | INFO     | summary of transferred files:
[2025-07-26 14:06:57] 2025-07-26 18:06:14,509 | INFO     |  -- lfn=log.45743349._034988.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 14:06:57] 2025-07-26 18:06:14,509 | INFO     | stage-out finished correctly
[2025-07-26 14:06:57] 2025-07-26 18:06:15,129 | INFO     | monitor loop #360: job 0:6745101141 is in state 'finished'
[2025-07-26 14:06:57] 2025-07-26 18:06:15,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:06:57] 2025-07-26 18:06:17,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 14:06:57] 2025-07-26 18:06:17,632 | INFO     | monitor loop #361: job 0:6745101141 is in state 'finished'
[2025-07-26 14:06:57] 2025-07-26 18:06:17,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:06:57] 2025-07-26 18:06:19,554 | INFO     | job 6745101141 has state=finished
[2025-07-26 14:06:57] 2025-07-26 18:06:19,554 | INFO     | preparing for final server update for job 6745101141 in state='finished'
[2025-07-26 14:06:57] 2025-07-26 18:06:19,621 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 14:06:57] 2025-07-26 18:06:19,621 | INFO     | this job has now completed (state=finished)
[2025-07-26 14:06:57] 2025-07-26 18:06:19,621 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 14:06:57] 2025-07-26 18:06:19,622 | INFO     | log transfer has been attempted: DONE
[2025-07-26 14:06:57] 2025-07-26 18:06:19,622 | INFO     | job 6745101141 has finished - writing final server update
[2025-07-26 14:06:57] 2025-07-26 18:06:19,622 | INFO     | total number of processed events: 400 (read)
[2025-07-26 14:06:57] 2025-07-26 18:06:19,623 | INFO     | executing command: lscpu
[2025-07-26 14:06:57] 2025-07-26 18:06:19,696 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 14:06:57] 2025-07-26 18:06:20,135 | INFO     | monitor loop #362: job 0:6745101141 is in state 'finished'
[2025-07-26 14:06:57] 2025-07-26 18:06:20,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:06:57] 2025-07-26 18:06:22,638 | INFO     | monitor loop #363: job 0:6745101141 is in state 'finished'
[2025-07-26 14:06:57] 2025-07-26 18:06:22,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 14:06:57] 2025-07-26 18:06:23,994 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 14:06:57] 2025-07-26 18:06:24,005 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3218.716791666667
[2025-07-26 14:06:57] 2025-07-26 18:06:24,017 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745101141/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,018 | INFO     | extracted standard info from prmon json
[2025-07-26 14:06:57] 2025-07-26 18:06:24,018 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 14:06:57] 2025-07-26 18:06:24,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 14:06:57] 2025-07-26 18:06:24,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:06:57] 2025-07-26 18:06:24,019 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | sum of square deviations: 120605052.0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | sum of deviations: -6008288573.999999
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | mean x: 1753550828.0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | mean y: 2605073.383561644
[2025-07-26 14:06:57] 2025-07-26 18:06:24,020 | INFO     | -- intersect: 87360798027.03062
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | intersect: 87360798027.03062
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | chi2: 0.029626260381093943
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | -- intersect: 87360798027.03062
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | current memory leak: -49.82 B/s (using 73 data points, chi2=0.03)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | could have reported an average CPU frequency of 3128 MHz (6 samples)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | ..............................
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . Timing measurements:
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . get job = 0 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . initial setup = 2 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . payload setup = 6 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . stage-in = 0 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,021 | INFO     | . payload execution = 4847 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,022 | INFO     | . stage-out = 0 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,022 | INFO     | . log creation = 0 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,022 | INFO     | ..............................
[2025-07-26 14:06:57] 2025-07-26 18:06:24,356 | INFO     | 
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | job summary report
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | --------------------------------------------------
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | PanDA job id: 6745101141
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | task id: 45743349
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | errors: (none)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | pilot state: finished 
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | transexitcode: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | exeerrorcode: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | exeerrordiag: 
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | exitcode: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,357 | INFO     | exitmsg: OK
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | cpuconsumptiontime: 35677 s
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | nevents: 400
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | neventsw: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | pid: 407108
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | pgrp: 407108
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | corecount: 8
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | event service: False
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 4857: 2424105, 4859: 2433103, 4861: 2433287, 4868: 2433481}
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | --------------------------------------------------
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | 
[2025-07-26 14:06:57] 2025-07-26 18:06:24,358 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 14:06:57] 2025-07-26 18:06:24,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | job 6745101141 has completed (purged errors)
[2025-07-26 14:06:57] 2025-07-26 18:06:24,385 | INFO     | overall cleanup function is called
[2025-07-26 14:06:57] 2025-07-26 18:06:25,393 | INFO     | --- collectZombieJob: --- 10, [407108]
[2025-07-26 14:06:57] 2025-07-26 18:06:25,393 | INFO     | zombie collector waiting for pid 407108
[2025-07-26 14:06:57] 2025-07-26 18:06:25,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:06:57] 2025-07-26 18:06:25,394 | INFO     | collected zombie processes
[2025-07-26 14:06:57] 2025-07-26 18:06:25,394 | INFO     | will attempt to kill all subprocesses of pid=407108
[2025-07-26 14:06:57] 2025-07-26 18:06:25,774 | INFO     | process IDs to be killed: [407108] (in reverse order)
[2025-07-26 14:06:57] 2025-07-26 18:06:25,871 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:06:57] 2025-07-26 18:06:25,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:06:57] 2025-07-26 18:06:25,883 | INFO     | did not find any defunct processes belonging to 407108
[2025-07-26 14:06:57] 2025-07-26 18:06:25,891 | INFO     | did not find any defunct processes belonging to 407108
[2025-07-26 14:06:57] 2025-07-26 18:06:25,891 | INFO     | ready for new job
[2025-07-26 14:06:57] 2025-07-26 18:06:25,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:06:57] 2025-07-26 18:06:25,893 | INFO     | ***************************************
[2025-07-26 14:06:57] 2025-07-26 18:06:25,893 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:06:57] 2025-07-26 18:06:25,893 | INFO     | ***************************************
[2025-07-26 14:06:57] 2025-07-26 18:06:25,893 | INFO     | 
[2025-07-26 14:06:57] 2025-07-26 18:06:25,898 | INFO     | architecture information:
[2025-07-26 14:06:57] 2025-07-26 18:06:25,898 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:06:57] 2025-07-26 18:06:25,915 | INFO     | cat /etc/os-release:
[2025-07-26 14:06:57] NAME="CentOS Linux"
[2025-07-26 14:06:57] VERSION="7 (Core)"
[2025-07-26 14:06:57] ID="centos"
[2025-07-26 14:06:57] ID_LIKE="rhel fedora"
[2025-07-26 14:06:57] VERSION_ID="7"
[2025-07-26 14:06:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:06:57] ANSI_COLOR="0;31"
[2025-07-26 14:06:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:06:57] HOME_URL="https://www.centos.org/"
[2025-07-26 14:06:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:06:57] 
[2025-07-26 14:06:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:06:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:06:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:06:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:06:57] 
[2025-07-26 14:06:57] 2025-07-26 18:06:25,916 | INFO     | ***************************************
[2025-07-26 14:06:57] 2025-07-26 18:06:26,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 14:06:57] 2025-07-26 18:06:26,434 | INFO     | sufficient remaining disk space (129104871424 B)
[2025-07-26 14:06:57] 2025-07-26 18:06:26,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:06:57] 2025-07-26 18:06:26,435 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:06:57] 2025-07-26 18:06:26,435 | INFO     | update_server=False
[2025-07-26 14:06:57] 2025-07-26 18:06:26,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:06:57] 2025-07-26 18:06:26,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:06:57] 2025-07-26 18:06:26,435 | INFO     | aborting loop
[2025-07-26 14:06:57] 2025-07-26 18:06:26,670 | INFO     | all job control threads have been joined
[2025-07-26 14:06:57] 2025-07-26 18:06:27,240 | INFO     | all payload control threads have been joined
[2025-07-26 14:06:57] 2025-07-26 18:06:27,440 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:27,440 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:27,464 | INFO     | all data control threads have been joined
[2025-07-26 14:06:57] 2025-07-26 18:06:27,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:06:57] 2025-07-26 18:06:27,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:06:57] 2025-07-26 18:06:27,673 | INFO     | [job] control thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:27,852 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,245 | INFO     | [payload] control thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,287 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,422 | INFO     | [job] validate thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,469 | INFO     | [data] control thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,613 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,619 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,842 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:28,879 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:29,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:06:57] 2025-07-26 18:06:29,608 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:30,105 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:31,624 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:36,988 | INFO     | job.realtimelogging is not enabled
[2025-07-26 14:06:57] 2025-07-26 18:06:37,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:06:57] 2025-07-26 18:06:39,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155198994240)>', '<ExcThread(monitor, started 140154563974912)>']
[2025-07-26 14:06:57] 2025-07-26 18:06:44,910 | INFO     | all workflow threads have been joined
[2025-07-26 14:06:57] 2025-07-26 18:06:44,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:06:57] 2025-07-26 18:06:44,910 | INFO     | traces error code: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:44,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:06:57] 2025-07-26 18:06:56,725 | INFO     | PID=400294 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 14:06:57] 2025-07-26 18:06:56,725 | INFO     | .. there are 15 such processes running
[2025-07-26 14:06:57] 2025-07-26 18:06:56,726 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:06:57] 2025-07-26 18:06:56,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:06:57] 2025-07-26 18:06:56,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:06:57] 2025-07-26 18:06:56,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:06:57] 2025-07-26 18:06:56,726 | INFO     | [monitor] control thread has ended
[2025-07-26 14:06:57] 2025-07-26 18:06:56,877 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:06:57] 2025-07-26 18:06:56,880 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:06:57] 2025-07-26 18:06:56,886 [wrapper] pilotpid: 400294
[2025-07-26 14:06:57] 2025-07-26 18:06:56,891 [wrapper] Pilot exit status: 0
[2025-07-26 14:06:57] 2025-07-26 18:06:56,907 [wrapper] pandaids: 6745101141
[2025-07-26 14:06:57] 2025-07-26 18:06:56,993 [wrapper] cleanup supervisor_pilot  552893 400295
[2025-07-26 14:06:57] 2025-07-26 18:06:56,998 [wrapper] Test setup, not cleaning
[2025-07-26 14:06:57] 2025-07-26 18:06:57,002 [wrapper] apfmon messages muted
[2025-07-26 14:06:57] 2025-07-26 18:06:57,005 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:06:57] 2025-07-26 18:06:57,008 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:06:57]  *** Error codes and diagnostics ***
[2025-07-26 14:06:57]     "exeErrorCode": 0,
[2025-07-26 14:06:57]     "exeErrorDiag": "",
[2025-07-26 14:06:57]     "pilotErrorCode": 0,
[2025-07-26 14:06:57]     "pilotErrorDiag": "",
[2025-07-26 14:06:57]  *** Listing of results directory ***
[2025-07-26 14:06:57] total 351636
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 04:27 pilot3.tar.gz
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 04:31 queuedata.json
[2025-07-26 14:06:57] -rwx------. 1 boincer umatlas     36292 Jul 26 04:32 runpilot2-wrapper.sh
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:06:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:44 run_atlas
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:44 job.xml
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas 145453948 Jul 26 12:44 EVNT.45743347._001986.pool.root.1
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:44 start_atlas.sh
[2025-07-26 14:06:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:44 shared
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 12:44 input.tar.gz
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:44 boinc_lockfile
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 12:44 pandaJob.out
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas    980117 Jul 26 12:44 agis_schedconf.cvmfs.json
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:45 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:06:57] drwx------. 4 boincer umatlas      4096 Jul 26 12:45 pilot3
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas      6944 Jul 26 14:04 init_data.xml
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas 209189654 Jul 26 14:05 HITS.45743349._034988.pool.root.1
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas       529 Jul 26 14:05 boinc_task_state.xml
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas      1028 Jul 26 14:06 memory_monitor_summary.json
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas    299754 Jul 26 14:06 log.45743349._034988.job.log.tgz.1
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas      7768 Jul 26 14:06 heartbeat.json
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 14:06 boinc_mmap_file
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas        27 Jul 26 14:06 wrapper_checkpoint.txt
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas       822 Jul 26 14:06 pilotlog.txt
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas        95 Jul 26 14:06 pilot_heartbeat.json
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas    479231 Jul 26 14:06 log.45743349._034988.job.log.1
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas       357 Jul 26 14:06 output.list
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas       620 Jul 26 14:06 runtime_log
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas    798720 Jul 26 14:06 result.tar.gz
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 14:06 runtime_log.err
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas       651 Jul 26 14:06 f8MLDmlVpz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoeRLDmSk76Jn.diag
[2025-07-26 14:06:57] -rw-r--r--. 1 boincer umatlas     21905 Jul 26 14:06 stderr.txt
[2025-07-26 14:06:57] HITS file was successfully produced:
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas 209189654 Jul 26 14:05 shared/HITS.pool.root.1
[2025-07-26 14:06:57]  *** Contents of shared directory: ***
[2025-07-26 14:06:57] total 347668
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas 145453948 Jul 26 12:44 ATLAS.root_0
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:44 start_atlas.sh
[2025-07-26 14:06:57] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 12:44 input.tar.gz
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas 209189654 Jul 26 14:05 HITS.pool.root.1
[2025-07-26 14:06:57] -rw-------. 1 boincer umatlas    798720 Jul 26 14:06 result.tar.gz
14:06:58 (396704): run_atlas exited; CPU time 35773.529259
14:06:58 (396704): called boinc_finish(0)

</stderr_txt>
]]>

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