Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:31:05 (3914581): wrapper (7.7.26015): starting
12:31:05 (3914581): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:31:05] Arguments: --nthreads 8
[2025-07-26 12:31:05] Threads: 8
[2025-07-26 12:31:05] Checking for CVMFS
[2025-07-26 12:31:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:31:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:31:05] 2.13.1.0 4026694 6977 94428 148783 3 188 20965397 40960001 12923 16776704 0 95431512 99.999 255174 59205 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 12:31:05] CVMFS is ok
[2025-07-26 12:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:31:05] Further information can be found at the LHC@home message board.
[2025-07-26 12:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:31:05] Checking for apptainer binary...
[2025-07-26 12:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:31:05] Running /usr/bin/apptainer --version
[2025-07-26 12:31:05] apptainer version 1.4.1-1.el9
[2025-07-26 12:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:31:05] c-208-38.aglt2.org
[2025-07-26 12:31:05] apptainer works
[2025-07-26 12:31:05] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:31:05] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:31:05] Starting ATLAS job with PandaID=6745133736
[2025-07-26 12:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:25:06]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:25:06]  workdir=None
[2025-07-26 13:25:06] ]
[2025-07-26 13:25:06] 2025-07-26 17:24:29,810 | INFO     | transferring file log.45743349._036738.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/log.45743349._036738.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 13:25:06] 2025-07-26 17:24:29,810 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/log.45743349._036738.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._036738.job
[2025-07-26 13:25:06] 2025-07-26 17:24:29,826 | INFO     | adding to output.list: log.45743349._036738.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/bc/log.45743349._036738.job.log.tg
[2025-07-26 13:25:06] 2025-07-26 17:24:29,827 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:25:06] 2025-07-26 17:24:29,827 | INFO     | summary of transferred files:
[2025-07-26 13:25:06] 2025-07-26 17:24:29,827 | INFO     |  -- lfn=log.45743349._036738.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:25:06] 2025-07-26 17:24:29,827 | INFO     | stage-out finished correctly
[2025-07-26 13:25:06] 2025-07-26 17:24:29,879 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:25:06] 2025-07-26 17:24:29,931 | INFO     | job 6745133736 has state=finished
[2025-07-26 13:25:06] 2025-07-26 17:24:29,932 | INFO     | preparing for final server update for job 6745133736 in state='finished'
[2025-07-26 13:25:06] 2025-07-26 17:24:29,932 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:25:06] 2025-07-26 17:24:29,932 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:25:06] 2025-07-26 17:24:29,933 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:25:06] 2025-07-26 17:24:29,933 | INFO     | job 6745133736 has finished - writing final server update
[2025-07-26 13:25:06] 2025-07-26 17:24:29,933 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:25:06] 2025-07-26 17:24:29,933 | INFO     | executing command: lscpu
[2025-07-26 13:25:06] 2025-07-26 17:24:29,987 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:25:06] 2025-07-26 17:24:30,324 | WARNING  | process 3924801 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 13:25:06] 2025-07-26 17:24:30,324 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:25:06] 2025-07-26 17:24:30,325 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:25:06] 2025-07-26 17:24:30,326 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3298526 B
[2025-07-26 13:25:06] 2025-07-26 17:24:30,326 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15775 B
[2025-07-26 13:25:06] 2025-07-26 17:24:30,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-26 13:25:06] 2025-07-26 17:24:31,873 | INFO     | PID=3918319 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:25:06] 2025-07-26 17:24:31,873 | INFO     | .. there are 16 such processes running
[2025-07-26 13:25:06] 2025-07-26 17:24:33,581 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 13:25:06] 2025-07-26 17:24:33,591 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3756.7562499999995
[2025-07-26 13:25:06] 2025-07-26 17:24:33,597 | INFO     | sufficient remaining disk space (166530646016 B)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,597 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,599 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6745133736: 3587299 B (within 2537553920 B limit)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,599 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6745133736/HITS.45743349._036738.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,599 | INFO     | total size of present files: 0 B (workdir size: 3587299 B)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,600 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/HITS.45743349._036738.pool.root.1 since it does not exist
[2025-07-26 13:25:06] 2025-07-26 17:24:33,603 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745133736/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,603 | INFO     | extracted standard info from prmon json
[2025-07-26 13:25:06] 2025-07-26 17:24:33,604 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:25:06] 2025-07-26 17:24:33,604 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:25:06] 2025-07-26 17:24:33,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:25:06] 2025-07-26 17:24:33,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | sum of square deviations: 28242390.0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | sum of deviations: -272723009.0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | mean x: 1753549147.0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | mean y: 2537900.0888888887
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | -- intersect: 16935708208.948135
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | intersect: 16935708208.948135
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | chi2: 0.0005736163488340652
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | -- intersect: 16935708208.948135
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | current memory leak: -9.66 B/s (using 45 data points, chi2=0.00)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | could have reported an average CPU frequency of 3761 MHz (5 samples)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | ..............................
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | . Timing measurements:
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | . get job = 0 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,605 | INFO     | . initial setup = 2 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | . payload setup = 5 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | . stage-in = 0 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | . payload execution = 3170 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | . stage-out = 0 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | . log creation = 0 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,606 | INFO     | ..............................
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | 
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | job summary report
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | --------------------------------------------------
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | PanDA job id: 6745133736
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | task id: 45743349
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | errors: (none)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:25:06] 2025-07-26 17:24:33,781 | INFO     | pilot state: finished 
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | transexitcode: 0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | exeerrorcode: 0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | exeerrordiag: 
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | exitcode: 0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | exitmsg: OK
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | cpuconsumptiontime: 23959 s
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | nevents: 400
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | neventsw: 0
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | pid: 3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | pgrp: 3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | corecount: 8
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | event service: False
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 3179: 2423289, 3180: 2432343, 3184: 2432541}
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | --------------------------------------------------
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | 
[2025-07-26 13:25:06] 2025-07-26 17:24:33,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-26 13:25:06] 2025-07-26 17:24:33,803 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | job 6745133736 has completed (purged errors)
[2025-07-26 13:25:06] 2025-07-26 17:24:33,804 | INFO     | overall cleanup function is called
[2025-07-26 13:25:06] 2025-07-26 17:24:34,006 | INFO     | number of running child processes to parent process 3924801: 1
[2025-07-26 13:25:06] 2025-07-26 17:24:34,006 | INFO     | maximum number of monitored processes: 6
[2025-07-26 13:25:06] 2025-07-26 17:24:34,006 | INFO     | aborting job monitoring since job object (job id=6745133736) has expired
[2025-07-26 13:25:06] 2025-07-26 17:24:34,812 | INFO     | --- collectZombieJob: --- 10, [3924801]
[2025-07-26 13:25:06] 2025-07-26 17:24:34,812 | INFO     | zombie collector waiting for pid 3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:34,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:25:06] 2025-07-26 17:24:34,812 | INFO     | collected zombie processes
[2025-07-26 13:25:06] 2025-07-26 17:24:34,812 | INFO     | will attempt to kill all subprocesses of pid=3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:35,145 | INFO     | process IDs to be killed: [3924801] (in reverse order)
[2025-07-26 13:25:06] 2025-07-26 17:24:35,261 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:25:06] 2025-07-26 17:24:35,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:25:06] 2025-07-26 17:24:35,277 | INFO     | did not find any defunct processes belonging to 3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:35,290 | INFO     | did not find any defunct processes belonging to 3924801
[2025-07-26 13:25:06] 2025-07-26 17:24:35,290 | INFO     | ready for new job
[2025-07-26 13:25:06] 2025-07-26 17:24:35,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:25:06] 2025-07-26 17:24:35,292 | INFO     | ***************************************
[2025-07-26 13:25:06] 2025-07-26 17:24:35,292 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:25:06] 2025-07-26 17:24:35,292 | INFO     | ***************************************
[2025-07-26 13:25:06] 2025-07-26 17:24:35,292 | INFO     | 
[2025-07-26 13:25:06] 2025-07-26 17:24:35,296 | INFO     | architecture information:
[2025-07-26 13:25:06] 2025-07-26 17:24:35,296 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:25:06] 2025-07-26 17:24:35,307 | INFO     | cat /etc/os-release:
[2025-07-26 13:25:06] NAME="CentOS Linux"
[2025-07-26 13:25:06] VERSION="7 (Core)"
[2025-07-26 13:25:06] ID="centos"
[2025-07-26 13:25:06] ID_LIKE="rhel fedora"
[2025-07-26 13:25:06] VERSION_ID="7"
[2025-07-26 13:25:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:25:06] ANSI_COLOR="0;31"
[2025-07-26 13:25:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:25:06] HOME_URL="https://www.centos.org/"
[2025-07-26 13:25:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:25:06] 
[2025-07-26 13:25:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:25:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:25:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:25:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:25:06] 
[2025-07-26 13:25:06] 2025-07-26 17:24:35,307 | INFO     | ***************************************
[2025-07-26 13:25:06] 2025-07-26 17:24:35,810 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-26 13:25:06] 2025-07-26 17:24:35,828 | INFO     | sufficient remaining disk space (166531694592 B)
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | INFO     | update_server=False
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:25:06] 2025-07-26 17:24:35,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:25:06] 2025-07-26 17:24:35,830 | INFO     | aborting loop
[2025-07-26 13:25:06] 2025-07-26 17:24:35,937 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:25:06] 2025-07-26 17:24:35,999 | INFO     | all payload control threads have been joined
[2025-07-26 13:25:06] 2025-07-26 17:24:36,363 | INFO     | all data control threads have been joined
[2025-07-26 13:25:06] 2025-07-26 17:24:36,833 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:36,834 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:36,894 | INFO     | all job control threads have been joined
[2025-07-26 13:25:06] 2025-07-26 17:24:37,004 | INFO     | [payload] control thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,318 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,338 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,370 | INFO     | [data] control thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,800 | INFO     | [job] validate thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,835 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,869 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,901 | INFO     | [job] control thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:37,954 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:38,095 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:38,284 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:38,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:25:06] 2025-07-26 17:24:39,646 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:39,943 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:46,369 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:25:06] 2025-07-26 17:24:47,375 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:25:06] 2025-07-26 17:24:48,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006284859200)>', '<ExcThread(monitor, started 140005657798400)>']
[2025-07-26 13:25:06] 2025-07-26 17:24:53,886 | INFO     | all workflow threads have been joined
[2025-07-26 13:25:06] 2025-07-26 17:24:53,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:25:06] 2025-07-26 17:24:53,887 | INFO     | traces error code: 0
[2025-07-26 13:25:06] 2025-07-26 17:24:53,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:25:06] 2025-07-26 17:25:06,379 | INFO     | PID=3918319 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | INFO     | .. there are 16 such processes running
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:25:06] 2025-07-26 17:25:06,380 | INFO     | [monitor] control thread has ended
[2025-07-26 13:25:06] 2025-07-26 17:25:06,508 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:25:06] 2025-07-26 17:25:06,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:25:06] 2025-07-26 17:25:06,514 [wrapper] pilotpid: 3918319
[2025-07-26 13:25:06] 2025-07-26 17:25:06,516 [wrapper] Pilot exit status: 0
[2025-07-26 13:25:06] 2025-07-26 17:25:06,526 [wrapper] pandaids: 6745133736
[2025-07-26 13:25:06] 2025-07-26 17:25:06,608 [wrapper] cleanup supervisor_pilot 4192490 3918320
[2025-07-26 13:25:06] 2025-07-26 17:25:06,611 [wrapper] Test setup, not cleaning
[2025-07-26 13:25:06] 2025-07-26 17:25:06,613 [wrapper] apfmon messages muted
[2025-07-26 13:25:06] 2025-07-26 17:25:06,616 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:25:06] 2025-07-26 17:25:06,618 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:25:06]  *** Error codes and diagnostics ***
[2025-07-26 13:25:06]     "exeErrorCode": 0,
[2025-07-26 13:25:06]     "exeErrorDiag": "",
[2025-07-26 13:25:06]     "pilotErrorCode": 0,
[2025-07-26 13:25:06]     "pilotErrorDiag": "",
[2025-07-26 13:25:06]  *** Listing of results directory ***
[2025-07-26 13:25:06] total 356956
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 07:03 pilot3.tar.gz
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 07:06 queuedata.json
[2025-07-26 13:25:06] -rwx------. 1 boincer umatlas     36292 Jul 26 07:07 runpilot2-wrapper.sh
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:25:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:31 run_atlas
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:31 job.xml
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas 144817498 Jul 26 12:31 EVNT.45743347._002096.pool.root.1
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:31 start_atlas.sh
[2025-07-26 13:25:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:31 shared
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 12:31 input.tar.gz
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:31 boinc_lockfile
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 12:31 pandaJob.out
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas    980117 Jul 26 12:31 agis_schedconf.cvmfs.json
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:31 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:25:06] drwx------. 4 boincer umatlas      4096 Jul 26 12:31 pilot3
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 13:21 init_data.xml
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas 215572892 Jul 26 13:24 HITS.45743349._036738.pool.root.1
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:24 boinc_task_state.xml
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas        95 Jul 26 13:24 pilot_heartbeat.json
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas      1028 Jul 26 13:24 memory_monitor_summary.json
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas    291614 Jul 26 13:24 log.45743349._036738.job.log.tgz.1
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas      7768 Jul 26 13:24 heartbeat.json
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:25 wrapper_checkpoint.txt
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:25 boinc_mmap_file
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas       823 Jul 26 13:25 pilotlog.txt
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas    332827 Jul 26 13:25 log.45743349._036738.job.log.1
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas       357 Jul 26 13:25 output.list
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:25 runtime_log
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas    645120 Jul 26 13:25 result.tar.gz
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 13:25 runtime_log.err
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas       651 Jul 26 13:25 8nZLDmevrz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNvRLDmntHr9n.diag
[2025-07-26 13:25:06] -rw-r--r--. 1 boincer umatlas     22617 Jul 26 13:25 stderr.txt
[2025-07-26 13:25:06] HITS file was successfully produced:
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas 215572892 Jul 26 13:24 shared/HITS.pool.root.1
[2025-07-26 13:25:06]  *** Contents of shared directory: ***
[2025-07-26 13:25:06] total 353136
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas 144817498 Jul 26 12:31 ATLAS.root_0
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:31 start_atlas.sh
[2025-07-26 13:25:06] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 12:31 input.tar.gz
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas 215572892 Jul 26 13:24 HITS.pool.root.1
[2025-07-26 13:25:06] -rw-------. 1 boincer umatlas    645120 Jul 26 13:25 result.tar.gz
13:25:08 (3914581): run_atlas exited; CPU time 24039.737713
13:25:08 (3914581): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN