Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:27:18 (3893994): wrapper (7.7.26015): starting
12:27:18 (3893994): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:27:18] Arguments: --nthreads 8
[2025-07-26 12:27:18] Threads: 8
[2025-07-26 12:27:18] Checking for CVMFS
[2025-07-26 12:27:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:27:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:27:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:27:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:27:18] 2.13.1.0 4026694 6973 93404 148783 3 188 20965397 40960001 12914 16776704 0 95375702 99.999 255173 59204 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 12:27:18] CVMFS is ok
[2025-07-26 12:27:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:27:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:27:18] Further information can be found at the LHC@home message board.
[2025-07-26 12:27:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:27:18] Checking for apptainer binary...
[2025-07-26 12:27:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:27:18] Running /usr/bin/apptainer --version
[2025-07-26 12:27:18] apptainer version 1.4.1-1.el9
[2025-07-26 12:27:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:27:18] c-208-38.aglt2.org
[2025-07-26 12:27:18] apptainer works
[2025-07-26 12:27:18] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:27:18] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:27:18] Starting ATLAS job with PandaID=6745133728
[2025-07-26 12:27:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:23:07]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:23:07]  lfn=log.45743349._036730.job.log.tgz.1
[2025-07-26 13:23:07]  mtime=0
[2025-07-26 13:23:07]  protocol_id=None
[2025-07-26 13:23:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 13:23:07]  replicas=None
[2025-07-26 13:23:07]  scope=mc23_13p6TeV
[2025-07-26 13:23:07]  status=None
[2025-07-26 13:23:07]  status_code=0
[2025-07-26 13:23:07]  storage_token=
[2025-07-26 13:23:07]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6745133728/log.45743349._036730.job.log.tgz.1
[2025-07-26 13:23:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/95/log.45743349._036730.job.log.tgz.1
[2025-07-26 13:23:07]  workdir=None
[2025-07-26 13:23:07] ]
[2025-07-26 13:23:07] 2025-07-26 17:22:28,432 | INFO     | transferring file log.45743349._036730.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6745133728/log.45743349._036730.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 13:23:07] 2025-07-26 17:22:28,433 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6745133728/log.45743349._036730.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._036730.j
[2025-07-26 13:23:07] 2025-07-26 17:22:28,451 | INFO     | adding to output.list: log.45743349._036730.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/95/log.45743349._036730.job.log.tg
[2025-07-26 13:23:07] 2025-07-26 17:22:28,452 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:23:07] 2025-07-26 17:22:28,452 | INFO     | summary of transferred files:
[2025-07-26 13:23:07] 2025-07-26 17:22:28,452 | INFO     |  -- lfn=log.45743349._036730.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:23:07] 2025-07-26 17:22:28,452 | INFO     | stage-out finished correctly
[2025-07-26 13:23:07] 2025-07-26 17:22:29,211 | INFO     | monitor loop #245: job 0:6745133728 is in state 'finished'
[2025-07-26 13:23:07] 2025-07-26 17:22:29,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:23:07] 2025-07-26 17:22:30,942 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:23:07] 2025-07-26 17:22:30,998 | INFO     | job 6745133728 has state=finished
[2025-07-26 13:23:07] 2025-07-26 17:22:30,998 | INFO     | preparing for final server update for job 6745133728 in state='finished'
[2025-07-26 13:23:07] 2025-07-26 17:22:30,998 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:23:07] 2025-07-26 17:22:30,998 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:23:07] 2025-07-26 17:22:30,998 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:23:07] 2025-07-26 17:22:30,999 | INFO     | job 6745133728 has finished - writing final server update
[2025-07-26 13:23:07] 2025-07-26 17:22:30,999 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:23:07] 2025-07-26 17:22:31,000 | INFO     | executing command: lscpu
[2025-07-26 13:23:07] 2025-07-26 17:22:31,055 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:23:07] 2025-07-26 17:22:31,714 | INFO     | monitor loop #246: job 0:6745133728 is in state 'finished'
[2025-07-26 13:23:07] 2025-07-26 17:22:31,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,216 | INFO     | monitor loop #247: job 0:6745133728 is in state 'finished'
[2025-07-26 13:23:07] 2025-07-26 17:22:34,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,612 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 13:23:07] 2025-07-26 17:22:34,616 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.4932500000004
[2025-07-26 13:23:07] 2025-07-26 17:22:34,630 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6745133728/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,630 | INFO     | extracted standard info from prmon json
[2025-07-26 13:23:07] 2025-07-26 17:22:34,630 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:23:07] 2025-07-26 17:22:34,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:23:07] 2025-07-26 17:22:34,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:23:07] 2025-07-26 17:22:34,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | sum of square deviations: 32179208.0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | sum of deviations: -262913294.0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | mean x: 1753548981.0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | mean y: 2552145.723404255
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | -- intersect: 14329546731.328289
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | intersect: 14329546731.328289
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | chi2: 0.00045872333496897624
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | -- intersect: 14329546731.328289
[2025-07-26 13:23:07] 2025-07-26 17:22:34,632 | INFO     | current memory leak: -8.17 B/s (using 47 data points, chi2=0.00)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | could have reported an average CPU frequency of 3764 MHz (5 samples)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | ..............................
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . Timing measurements:
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . get job = 0 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . initial setup = 2 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . payload setup = 5 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . stage-in = 0 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . payload execution = 3276 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . stage-out = 0 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | . log creation = 0 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,633 | INFO     | ..............................
[2025-07-26 13:23:07] 2025-07-26 17:22:34,982 | INFO     | 
[2025-07-26 13:23:07] 2025-07-26 17:22:34,982 | INFO     | job summary report
[2025-07-26 13:23:07] 2025-07-26 17:22:34,982 | INFO     | --------------------------------------------------
[2025-07-26 13:23:07] 2025-07-26 17:22:34,982 | INFO     | PanDA job id: 6745133728
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | task id: 45743349
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | errors: (none)
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | pilot state: finished 
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | transexitcode: 0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | exeerrorcode: 0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | exeerrordiag: 
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | exitcode: 0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | exitmsg: OK
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | cpuconsumptiontime: 24432 s
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | nevents: 400
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | neventsw: 0
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | pid: 3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | pgrp: 3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | corecount: 8
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | event service: False
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3285: 2423319, 3286: 2432319, 3288: 2432375, 3292: 2432729}
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | --------------------------------------------------
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | 
[2025-07-26 13:23:07] 2025-07-26 17:22:34,983 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-26 13:23:07] 2025-07-26 17:22:35,000 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,002 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:23:07] 2025-07-26 17:22:35,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,002 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:23:07] 2025-07-26 17:22:35,002 | INFO     | job 6745133728 has completed (purged errors)
[2025-07-26 13:23:07] 2025-07-26 17:22:35,002 | INFO     | overall cleanup function is called
[2025-07-26 13:23:07] 2025-07-26 17:22:36,009 | INFO     | --- collectZombieJob: --- 10, [3904076]
[2025-07-26 13:23:07] 2025-07-26 17:22:36,010 | INFO     | zombie collector waiting for pid 3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:36,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:23:07] 2025-07-26 17:22:36,010 | INFO     | collected zombie processes
[2025-07-26 13:23:07] 2025-07-26 17:22:36,010 | INFO     | will attempt to kill all subprocesses of pid=3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:36,363 | INFO     | process IDs to be killed: [3904076] (in reverse order)
[2025-07-26 13:23:07] 2025-07-26 17:22:36,474 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:23:07] 2025-07-26 17:22:36,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:23:07] 2025-07-26 17:22:36,489 | INFO     | did not find any defunct processes belonging to 3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:36,501 | INFO     | did not find any defunct processes belonging to 3904076
[2025-07-26 13:23:07] 2025-07-26 17:22:36,501 | INFO     | ready for new job
[2025-07-26 13:23:07] 2025-07-26 17:22:36,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:23:07] 2025-07-26 17:22:36,502 | INFO     | ***************************************
[2025-07-26 13:23:07] 2025-07-26 17:22:36,502 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:23:07] 2025-07-26 17:22:36,502 | INFO     | ***************************************
[2025-07-26 13:23:07] 2025-07-26 17:22:36,502 | INFO     | 
[2025-07-26 13:23:07] 2025-07-26 17:22:36,507 | INFO     | architecture information:
[2025-07-26 13:23:07] 2025-07-26 17:22:36,507 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:23:07] 2025-07-26 17:22:36,521 | INFO     | cat /etc/os-release:
[2025-07-26 13:23:07] NAME="CentOS Linux"
[2025-07-26 13:23:07] VERSION="7 (Core)"
[2025-07-26 13:23:07] ID="centos"
[2025-07-26 13:23:07] ID_LIKE="rhel fedora"
[2025-07-26 13:23:07] VERSION_ID="7"
[2025-07-26 13:23:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:23:07] ANSI_COLOR="0;31"
[2025-07-26 13:23:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:23:07] HOME_URL="https://www.centos.org/"
[2025-07-26 13:23:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:23:07] 
[2025-07-26 13:23:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:23:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:23:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:23:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:23:07] 
[2025-07-26 13:23:07] 2025-07-26 17:22:36,521 | INFO     | ***************************************
[2025-07-26 13:23:07] 2025-07-26 17:22:37,024 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-26 13:23:07] 2025-07-26 17:22:37,040 | INFO     | sufficient remaining disk space (166219218944 B)
[2025-07-26 13:23:07] 2025-07-26 17:22:37,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:23:07] 2025-07-26 17:22:37,041 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:23:07] 2025-07-26 17:22:37,041 | INFO     | update_server=False
[2025-07-26 13:23:07] 2025-07-26 17:22:37,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:23:07] 2025-07-26 17:22:37,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:23:07] 2025-07-26 17:22:37,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:23:07] 2025-07-26 17:22:37,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:23:07] 2025-07-26 17:22:37,725 | INFO     | aborting loop
[2025-07-26 13:23:07] 2025-07-26 17:22:37,735 | INFO     | all data control threads have been joined
[2025-07-26 13:23:07] 2025-07-26 17:22:37,764 | INFO     | all payload control threads have been joined
[2025-07-26 13:23:07] 2025-07-26 17:22:37,970 | INFO     | all job control threads have been joined
[2025-07-26 13:23:07] 2025-07-26 17:22:38,041 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,407 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,598 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,730 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,740 | INFO     | [data] control thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,768 | INFO     | [payload] control thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,904 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:38,975 | INFO     | [job] control thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,047 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,149 | INFO     | [job] validate thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,348 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,424 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,449 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:39,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:23:07] 2025-07-26 17:22:40,706 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:41,047 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:47,394 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:23:07] 2025-07-26 17:22:48,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:23:07] 2025-07-26 17:22:50,416 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592348641088)>', '<ExcThread(monitor, started 140591727900416)>']
[2025-07-26 13:23:07] 2025-07-26 17:22:55,441 | INFO     | all workflow threads have been joined
[2025-07-26 13:23:07] 2025-07-26 17:22:55,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:23:07] 2025-07-26 17:22:55,441 | INFO     | traces error code: 0
[2025-07-26 13:23:07] 2025-07-26 17:22:55,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:23:07] 2025-07-26 17:23:07,151 | INFO     | PID=3897661 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:23:07] 2025-07-26 17:23:07,151 | INFO     | .. there are 16 such processes running
[2025-07-26 13:23:07] 2025-07-26 17:23:07,152 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:23:07] 2025-07-26 17:23:07,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:23:07] 2025-07-26 17:23:07,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:23:07] 2025-07-26 17:23:07,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:23:07] 2025-07-26 17:23:07,152 | INFO     | [monitor] control thread has ended
[2025-07-26 13:23:07] 2025-07-26 17:23:07,240 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:23:07] 2025-07-26 17:23:07,243 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:23:07] 2025-07-26 17:23:07,246 [wrapper] pilotpid: 3897661
[2025-07-26 13:23:07] 2025-07-26 17:23:07,248 [wrapper] Pilot exit status: 0
[2025-07-26 13:23:07] 2025-07-26 17:23:07,258 [wrapper] pandaids: 6745133728
[2025-07-26 13:23:07] 2025-07-26 17:23:07,343 [wrapper] cleanup supervisor_pilot 4185243 3897662
[2025-07-26 13:23:07] 2025-07-26 17:23:07,346 [wrapper] Test setup, not cleaning
[2025-07-26 13:23:07] 2025-07-26 17:23:07,349 [wrapper] apfmon messages muted
[2025-07-26 13:23:07] 2025-07-26 17:23:07,352 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:23:07] 2025-07-26 17:23:07,354 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:23:07]  *** Error codes and diagnostics ***
[2025-07-26 13:23:07]     "exeErrorCode": 0,
[2025-07-26 13:23:07]     "exeErrorDiag": "",
[2025-07-26 13:23:07]     "pilotErrorCode": 0,
[2025-07-26 13:23:07]     "pilotErrorDiag": "",
[2025-07-26 13:23:07]  *** Listing of results directory ***
[2025-07-26 13:23:07] total 354584
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 07:03 pilot3.tar.gz
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 07:06 queuedata.json
[2025-07-26 13:23:07] -rwx------. 1 boincer umatlas     36292 Jul 26 07:07 runpilot2-wrapper.sh
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:23:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:27 run_atlas
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:27 job.xml
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas 144817498 Jul 26 12:27 EVNT.45743347._002096.pool.root.1
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:27 start_atlas.sh
[2025-07-26 13:23:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:27 shared
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas    542898 Jul 26 12:27 input.tar.gz
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:27 boinc_lockfile
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 12:27 pandaJob.out
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas    980117 Jul 26 12:27 agis_schedconf.cvmfs.json
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:27 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:23:07] drwx------. 4 boincer umatlas      4096 Jul 26 12:27 pilot3
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 13:21 init_data.xml
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas 213145942 Jul 26 13:22 HITS.45743349._036730.pool.root.1
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:22 boinc_task_state.xml
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas      1026 Jul 26 13:22 memory_monitor_summary.json
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas    283648 Jul 26 13:22 log.45743349._036730.job.log.tgz.1
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas      7765 Jul 26 13:22 heartbeat.json
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:23 wrapper_checkpoint.txt
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:23 boinc_mmap_file
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas       823 Jul 26 13:23 pilotlog.txt
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas        95 Jul 26 13:23 pilot_heartbeat.json
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas    342288 Jul 26 13:23 log.45743349._036730.job.log.1
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas       357 Jul 26 13:23 output.list
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:23 runtime_log
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas    645120 Jul 26 13:23 result.tar.gz
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 13:23 runtime_log.err
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas       651 Jul 26 13:23 5mNLDmevrz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFvRLDmSt35Wn.diag
[2025-07-26 13:23:07] -rw-r--r--. 1 boincer umatlas     21659 Jul 26 13:23 stderr.txt
[2025-07-26 13:23:07] HITS file was successfully produced:
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas 213145942 Jul 26 13:22 shared/HITS.pool.root.1
[2025-07-26 13:23:07]  *** Contents of shared directory: ***
[2025-07-26 13:23:07] total 350764
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas 144817498 Jul 26 12:27 ATLAS.root_0
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:27 start_atlas.sh
[2025-07-26 13:23:07] -rw-r--r--. 2 boincer umatlas    542898 Jul 26 12:27 input.tar.gz
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas 213145942 Jul 26 13:22 HITS.pool.root.1
[2025-07-26 13:23:07] -rw-------. 1 boincer umatlas    645120 Jul 26 13:23 result.tar.gz
13:23:09 (3893994): run_atlas exited; CPU time 24512.379580
13:23:09 (3893994): called boinc_finish(0)

</stderr_txt>
]]>

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