Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:00 (162658): wrapper (7.7.26015): starting
12:24:00 (162658): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:24:00] Arguments: --nthreads 8
[2025-07-26 12:24:00] Threads: 8
[2025-07-26 12:24:00] Checking for CVMFS
[2025-07-26 12:24:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:24:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:24:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:24:01] 2.13.0.0 2367554 17176 288552 148783 0 288 30249833 32935936 19371 16776704 1 112517231 99.597 139902872 18791 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 12:24:01] CVMFS is ok
[2025-07-26 12:24:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:24:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:24:01] Further information can be found at the LHC@home message board.
[2025-07-26 12:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:24:01] Checking for apptainer binary...
[2025-07-26 12:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:24:01] Running /usr/bin/apptainer --version
[2025-07-26 12:24:01] apptainer version 1.4.1-1.el9
[2025-07-26 12:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:24:01] c7-2-15.aglt2.org
[2025-07-26 12:24:01] apptainer works
[2025-07-26 12:24:01] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:24:01] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:24:02] Starting ATLAS job with PandaID=6745133679
[2025-07-26 12:24:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:52:36]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:52:36] 2025-07-26 17:51:47,772 | INFO     | transferring file log.45743349._036681.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745133679/log.45743349._036681.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 13:52:36] 2025-07-26 17:51:47,773 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745133679/log.45743349._036681.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._036681.job
[2025-07-26 13:52:36] 2025-07-26 17:51:47,815 | INFO     | adding to output.list: log.45743349._036681.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/24/log.45743349._036681.job.log.tg
[2025-07-26 13:52:36] 2025-07-26 17:51:47,816 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:52:36] 2025-07-26 17:51:47,817 | INFO     | summary of transferred files:
[2025-07-26 13:52:36] 2025-07-26 17:51:47,817 | INFO     |  -- lfn=log.45743349._036681.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:52:36] 2025-07-26 17:51:47,817 | INFO     | stage-out finished correctly
[2025-07-26 13:52:36] 2025-07-26 17:51:47,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:52:36] 2025-07-26 17:51:49,216 | INFO     | job 6745133679 has state=finished
[2025-07-26 13:52:36] 2025-07-26 17:51:49,216 | INFO     | preparing for final server update for job 6745133679 in state='finished'
[2025-07-26 13:52:36] 2025-07-26 17:51:49,217 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:52:36] 2025-07-26 17:51:49,217 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:52:36] 2025-07-26 17:51:49,217 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:52:36] 2025-07-26 17:51:49,217 | INFO     | job 6745133679 has finished - writing final server update
[2025-07-26 13:52:36] 2025-07-26 17:51:49,218 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:52:36] 2025-07-26 17:51:49,223 | INFO     | executing command: lscpu
[2025-07-26 13:52:36] 2025-07-26 17:51:49,400 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:52:36] 2025-07-26 17:51:51,440 | INFO     | PID=167263 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:52:36] 2025-07-26 17:51:51,441 | INFO     | .. there are 28 such processes running
[2025-07-26 13:52:36] 2025-07-26 17:51:51,459 | WARNING  | process 179621 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 13:52:36] 2025-07-26 17:51:51,459 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745133679/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:52:36] 2025-07-26 17:51:51,461 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2818455 B
[2025-07-26 13:52:36] 2025-07-26 17:51:51,461 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-07-26 13:52:36] 2025-07-26 17:51:51,461 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 13:52:36] 2025-07-26 17:51:56,452 | INFO     | 5256s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 13:52:36] 2025-07-26 17:52:03,621 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 13:52:36] 2025-07-26 17:52:03,632 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3108.015447916668
[2025-07-26 13:52:36] 2025-07-26 17:52:03,650 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745133679/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,650 | INFO     | extracted standard info from prmon json
[2025-07-26 13:52:36] 2025-07-26 17:52:03,651 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:52:36] 2025-07-26 17:52:03,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:52:36] 2025-07-26 17:52:03,652 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:52:36] 2025-07-26 17:52:03,652 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:52:36] 2025-07-26 17:52:03,654 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:52:36] 2025-07-26 17:52:03,654 | INFO     | sum of square deviations: 152858680.0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | sum of deviations: -16683096546.000002
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | mean x: 1753549797.0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | mean y: 2356643.658227848
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | -- intersect: 191385931077.04797
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | intersect: 191385931077.04797
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | chi2: 0.09863538154295357
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | -- intersect: 191385931077.04797
[2025-07-26 13:52:36] 2025-07-26 17:52:03,655 | INFO     | current memory leak: -109.14 B/s (using 79 data points, chi2=0.10)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | could have reported an average CPU frequency of 3078 MHz (6 samples)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | ..............................
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | . Timing measurements:
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | . get job = 0 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | . initial setup = 4 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | . payload setup = 16 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,656 | INFO     | . stage-in = 0 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,657 | INFO     | . payload execution = 5200 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,657 | INFO     | . stage-out = 1 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,657 | INFO     | . log creation = 0 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,657 | INFO     | ..............................
[2025-07-26 13:52:36] 2025-07-26 17:52:03,687 | INFO     | sufficient remaining disk space (75844550656 B)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,689 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,700 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6745133679: 3120867 B (within 2537553920 B limit)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,701 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6745133679/HITS.45743349._036681.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,701 | INFO     | total size of present files: 0 B (workdir size: 3120867 B)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,701 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6745133679/HITS.45743349._036681.pool.root.1 since it does not exist
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | 
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | job summary report
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | --------------------------------------------------
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | PanDA job id: 6745133679
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | task id: 45743349
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | errors: (none)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,821 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | pilot state: finished 
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | transexitcode: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | exeerrorcode: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | exeerrordiag: 
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | exitcode: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | exitmsg: OK
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | cpuconsumptiontime: 36605 s
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | nevents: 400
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | neventsw: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | pid: 179621
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | pgrp: 179621
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | corecount: 8
[2025-07-26 13:52:36] 2025-07-26 17:52:03,822 | INFO     | event service: False
[2025-07-26 13:52:36] 2025-07-26 17:52:03,824 | INFO     | sizes: {0: 2397469, 1: 2397497, 9: 2397759, 11: 2397787, 5220: 2424063, 5222: 2433245, 5238: 2433507}
[2025-07-26 13:52:36] 2025-07-26 17:52:03,824 | INFO     | --------------------------------------------------
[2025-07-26 13:52:36] 2025-07-26 17:52:03,824 | INFO     | 
[2025-07-26 13:52:36] 2025-07-26 17:52:03,824 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 13:52:36] 2025-07-26 17:52:03,949 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | job 6745133679 has completed (purged errors)
[2025-07-26 13:52:36] 2025-07-26 17:52:03,952 | INFO     | overall cleanup function is called
[2025-07-26 13:52:36] 2025-07-26 17:52:04,335 | INFO     | number of running child processes to parent process 179621: 1
[2025-07-26 13:52:36] 2025-07-26 17:52:04,335 | INFO     | maximum number of monitored processes: 6
[2025-07-26 13:52:36] 2025-07-26 17:52:04,335 | INFO     | aborting job monitoring since job object (job id=6745133679) has expired
[2025-07-26 13:52:36] 2025-07-26 17:52:04,967 | INFO     | --- collectZombieJob: --- 10, [179621]
[2025-07-26 13:52:36] 2025-07-26 17:52:04,967 | INFO     | zombie collector waiting for pid 179621
[2025-07-26 13:52:36] 2025-07-26 17:52:04,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:52:36] 2025-07-26 17:52:04,969 | INFO     | collected zombie processes
[2025-07-26 13:52:36] 2025-07-26 17:52:04,970 | INFO     | will attempt to kill all subprocesses of pid=179621
[2025-07-26 13:52:36] 2025-07-26 17:52:05,644 | INFO     | process IDs to be killed: [179621] (in reverse order)
[2025-07-26 13:52:36] 2025-07-26 17:52:05,979 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:52:36] 2025-07-26 17:52:05,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:52:36] 2025-07-26 17:52:06,001 | INFO     | did not find any defunct processes belonging to 179621
[2025-07-26 13:52:36] 2025-07-26 17:52:06,022 | INFO     | did not find any defunct processes belonging to 179621
[2025-07-26 13:52:36] 2025-07-26 17:52:06,022 | INFO     | ready for new job
[2025-07-26 13:52:36] 2025-07-26 17:52:06,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:52:36] 2025-07-26 17:52:06,024 | INFO     | ***************************************
[2025-07-26 13:52:36] 2025-07-26 17:52:06,024 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:52:36] 2025-07-26 17:52:06,025 | INFO     | ***************************************
[2025-07-26 13:52:36] 2025-07-26 17:52:06,025 | INFO     | 
[2025-07-26 13:52:36] 2025-07-26 17:52:06,044 | INFO     | architecture information:
[2025-07-26 13:52:36] 2025-07-26 17:52:06,045 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:52:36] 2025-07-26 17:52:06,070 | INFO     | cat /etc/os-release:
[2025-07-26 13:52:36] NAME="CentOS Linux"
[2025-07-26 13:52:36] VERSION="7 (Core)"
[2025-07-26 13:52:36] ID="centos"
[2025-07-26 13:52:36] ID_LIKE="rhel fedora"
[2025-07-26 13:52:36] VERSION_ID="7"
[2025-07-26 13:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:52:36] ANSI_COLOR="0;31"
[2025-07-26 13:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:52:36] HOME_URL="https://www.centos.org/"
[2025-07-26 13:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:52:36] 
[2025-07-26 13:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:52:36] 
[2025-07-26 13:52:36] 2025-07-26 17:52:06,071 | INFO     | ***************************************
[2025-07-26 13:52:36] 2025-07-26 17:52:06,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 13:52:36] 2025-07-26 17:52:06,660 | INFO     | sufficient remaining disk space (75847696384 B)
[2025-07-26 13:52:36] 2025-07-26 17:52:06,661 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:52:36] 2025-07-26 17:52:06,661 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:52:36] 2025-07-26 17:52:06,661 | INFO     | update_server=False
[2025-07-26 13:52:36] 2025-07-26 17:52:06,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:52:36] 2025-07-26 17:52:06,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:52:36] 2025-07-26 17:52:06,839 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 13:52:36] 2025-07-26 17:52:06,839 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 13:52:36] 2025-07-26 17:52:06,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:52:36] 2025-07-26 17:52:06,839 | INFO     | will abort loop
[2025-07-26 13:52:36] 2025-07-26 17:52:06,991 | INFO     | all job control threads have been joined
[2025-07-26 13:52:36] 2025-07-26 17:52:07,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:52:36] 2025-07-26 17:52:07,654 | INFO     | all payload control threads have been joined
[2025-07-26 13:52:36] 2025-07-26 17:52:07,668 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,748 | INFO     | all data control threads have been joined
[2025-07-26 13:52:36] 2025-07-26 17:52:07,833 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,838 | INFO     | [job] validate thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,845 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,917 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,950 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,976 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:07,998 | INFO     | [job] control thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:08,005 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:08,660 | INFO     | [payload] control thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:08,670 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:08,754 | INFO     | [data] control thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:08,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:52:36] 2025-07-26 17:52:09,261 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:09,841 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:11,560 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:16,832 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:52:36] 2025-07-26 17:52:17,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:52:36] 2025-07-26 17:52:18,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147945051968)>', '<ExcThread(monitor, started 140147433649920)>']
[2025-07-26 13:52:36] 2025-07-26 17:52:23,337 | INFO     | all workflow threads have been joined
[2025-07-26 13:52:36] 2025-07-26 17:52:23,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:52:36] 2025-07-26 17:52:23,338 | INFO     | traces error code: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:23,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:52:36] 2025-07-26 17:52:36,158 | INFO     | PID=167263 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | INFO     | .. there are 28 such processes running
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:52:36] 2025-07-26 17:52:36,160 | INFO     | [monitor] control thread has ended
[2025-07-26 13:52:36] 2025-07-26 17:52:36,340 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:52:36] 2025-07-26 17:52:36,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:52:36] 2025-07-26 17:52:36,366 [wrapper] pilotpid: 167263
[2025-07-26 13:52:36] 2025-07-26 17:52:36,373 [wrapper] Pilot exit status: 0
[2025-07-26 13:52:36] 2025-07-26 17:52:36,430 [wrapper] pandaids: 6745133679
[2025-07-26 13:52:36] 2025-07-26 17:52:36,558 [wrapper] cleanup supervisor_pilot  684653 167264
[2025-07-26 13:52:36] 2025-07-26 17:52:36,563 [wrapper] Test setup, not cleaning
[2025-07-26 13:52:36] 2025-07-26 17:52:36,567 [wrapper] apfmon messages muted
[2025-07-26 13:52:36] 2025-07-26 17:52:36,570 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:52:36] 2025-07-26 17:52:36,573 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:52:36]  *** Error codes and diagnostics ***
[2025-07-26 13:52:36]     "exeErrorCode": 0,
[2025-07-26 13:52:36]     "exeErrorDiag": "",
[2025-07-26 13:52:36]     "pilotErrorCode": 0,
[2025-07-26 13:52:36]     "pilotErrorDiag": "",
[2025-07-26 13:52:36]  *** Listing of results directory ***
[2025-07-26 13:52:36] total 354804
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 06:53 pilot3.tar.gz
[2025-07-26 13:52:36] -rwx------. 1 boincer umatlas     36292 Jul 26 07:02 runpilot2-wrapper.sh
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 07:02 queuedata.json
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:52:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:23 run_atlas
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:23 job.xml
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas 146973506 Jul 26 12:24 EVNT.45743347._002093.pool.root.1
[2025-07-26 13:52:36] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:24 shared
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas    542879 Jul 26 12:24 input.tar.gz
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:24 start_atlas.sh
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:24 boinc_lockfile
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas      2560 Jul 26 12:24 pandaJob.out
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas    980117 Jul 26 12:24 agis_schedconf.cvmfs.json
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:24 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:52:36] drwx------. 4 boincer umatlas      4096 Jul 26 12:24 pilot3
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas      6933 Jul 26 13:46 init_data.xml
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas 210872943 Jul 26 13:51 HITS.45743349._036681.pool.root.1
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:51 boinc_task_state.xml
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas      1031 Jul 26 13:51 memory_monitor_summary.json
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas        95 Jul 26 13:51 pilot_heartbeat.json
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas    295686 Jul 26 13:51 log.45743349._036681.job.log.tgz.1
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas      7772 Jul 26 13:52 heartbeat.json
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:52 boinc_mmap_file
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas       822 Jul 26 13:52 pilotlog.txt
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:52 wrapper_checkpoint.txt
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas    502160 Jul 26 13:52 log.45743349._036681.job.log.1
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas       357 Jul 26 13:52 output.list
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:52 runtime_log
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas    819200 Jul 26 13:52 result.tar.gz
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 13:52 runtime_log.err
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas       651 Jul 26 13:52 Hg2KDm0qrz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDuRLDm0X3AUn.diag
[2025-07-26 13:52:36] -rw-r--r--. 1 boincer umatlas     22762 Jul 26 13:52 stderr.txt
[2025-07-26 13:52:36] HITS file was successfully produced:
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas 210872943 Jul 26 13:51 shared/HITS.pool.root.1
[2025-07-26 13:52:36]  *** Contents of shared directory: ***
[2025-07-26 13:52:36] total 350816
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas 146973506 Jul 26 12:24 ATLAS.root_0
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas    542879 Jul 26 12:24 input.tar.gz
[2025-07-26 13:52:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:24 start_atlas.sh
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas 210872943 Jul 26 13:51 HITS.pool.root.1
[2025-07-26 13:52:36] -rw-------. 1 boincer umatlas    819200 Jul 26 13:52 result.tar.gz
13:52:38 (162658): run_atlas exited; CPU time 36774.854266
13:52:38 (162658): called boinc_finish(0)

</stderr_txt>
]]>

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