Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:35 (3873562): wrapper (7.7.26015): starting
12:24:35 (3873562): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:24:35] Arguments: --nthreads 8
[2025-07-26 12:24:35] Threads: 8
[2025-07-26 12:24:35] Checking for CVMFS
[2025-07-26 12:24:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:24:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:24:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:24:36] 2.13.1.0 4026694 6970 93404 148783 2 188 20965397 40960001 12914 16776704 0 95320101 99.999 255172 59204 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 12:24:36] CVMFS is ok
[2025-07-26 12:24:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:24:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:24:36] Further information can be found at the LHC@home message board.
[2025-07-26 12:24:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:24:36] Checking for apptainer binary...
[2025-07-26 12:24:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:24:36] Running /usr/bin/apptainer --version
[2025-07-26 12:24:36] apptainer version 1.4.1-1.el9
[2025-07-26 12:24:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:24:36] c-208-38.aglt2.org
[2025-07-26 12:24:36] apptainer works
[2025-07-26 12:24:36] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:24:36] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:24:36] Starting ATLAS job with PandaID=6745133748
[2025-07-26 12:24:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:19:39]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:19:39]  lfn=log.45743349._036750.job.log.tgz.1
[2025-07-26 13:19:39]  mtime=0
[2025-07-26 13:19:39]  protocol_id=None
[2025-07-26 13:19:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 13:19:39]  replicas=None
[2025-07-26 13:19:39]  scope=mc23_13p6TeV
[2025-07-26 13:19:39]  status=None
[2025-07-26 13:19:39]  status_code=0
[2025-07-26 13:19:39]  storage_token=
[2025-07-26 13:19:39]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6745133748/log.45743349._036750.job.log.tgz.1
[2025-07-26 13:19:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/8b/log.45743349._036750.job.log.tgz.1
[2025-07-26 13:19:39]  workdir=None
[2025-07-26 13:19:39] ]
[2025-07-26 13:19:39] 2025-07-26 17:19:00,063 | INFO     | transferring file log.45743349._036750.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6745133748/log.45743349._036750.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 13:19:39] 2025-07-26 17:19:00,063 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6745133748/log.45743349._036750.job.log.tgz.1 /tmp/boinchome/slots/4/log.45743349._036750.job
[2025-07-26 13:19:39] 2025-07-26 17:19:00,080 | INFO     | adding to output.list: log.45743349._036750.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/8b/log.45743349._036750.job.log.tg
[2025-07-26 13:19:39] 2025-07-26 17:19:00,081 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:19:39] 2025-07-26 17:19:00,081 | INFO     | summary of transferred files:
[2025-07-26 13:19:39] 2025-07-26 17:19:00,081 | INFO     |  -- lfn=log.45743349._036750.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:19:39] 2025-07-26 17:19:00,081 | INFO     | stage-out finished correctly
[2025-07-26 13:19:39] 2025-07-26 17:19:00,417 | INFO     | monitor loop #241: job 0:6745133748 is in state 'finished'
[2025-07-26 13:19:39] 2025-07-26 17:19:00,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:19:39] 2025-07-26 17:19:02,920 | INFO     | monitor loop #242: job 0:6745133748 is in state 'finished'
[2025-07-26 13:19:39] 2025-07-26 17:19:02,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:19:39] 2025-07-26 17:19:02,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:19:39] 2025-07-26 17:19:03,886 | INFO     | job 6745133748 has state=finished
[2025-07-26 13:19:39] 2025-07-26 17:19:03,886 | INFO     | preparing for final server update for job 6745133748 in state='finished'
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | job 6745133748 has finished - writing final server update
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:19:39] 2025-07-26 17:19:03,887 | INFO     | executing command: lscpu
[2025-07-26 13:19:39] 2025-07-26 17:19:03,945 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:19:39] 2025-07-26 17:19:05,424 | INFO     | monitor loop #243: job 0:6745133748 is in state 'finished'
[2025-07-26 13:19:39] 2025-07-26 17:19:05,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,638 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 13:19:39] 2025-07-26 17:19:07,644 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3756.7382343749987
[2025-07-26 13:19:39] 2025-07-26 17:19:07,657 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6745133748/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,657 | INFO     | extracted standard info from prmon json
[2025-07-26 13:19:39] 2025-07-26 17:19:07,658 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:19:39] 2025-07-26 17:19:07,658 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:19:39] 2025-07-26 17:19:07,658 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:19:39] 2025-07-26 17:19:07,658 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | sum of square deviations: 30168007.5
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | sum of deviations: -402555469.99999994
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | mean x: 1753548786.5
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | mean y: 2553608.5217391304
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | -- intersect: 23401535325.078163
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | intersect: 23401535325.078163
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | chi2: 0.0006461877745463495
[2025-07-26 13:19:39] 2025-07-26 17:19:07,659 | INFO     | -- intersect: 23401535325.078163
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | current memory leak: -13.34 B/s (using 46 data points, chi2=0.00)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | could have reported an average CPU frequency of 3755 MHz (5 samples)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | ..............................
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . Timing measurements:
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . get job = 0 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . initial setup = 2 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . payload setup = 5 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . stage-in = 0 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . payload execution = 3230 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . stage-out = 0 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | . log creation = 0 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,660 | INFO     | ..............................
[2025-07-26 13:19:39] 2025-07-26 17:19:07,717 | INFO     | 
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | job summary report
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | --------------------------------------------------
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | PanDA job id: 6745133748
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | task id: 45743349
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | errors: (none)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | pilot state: finished 
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | transexitcode: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | exeerrorcode: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | exeerrordiag: 
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | exitcode: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | exitmsg: OK
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | cpuconsumptiontime: 24318 s
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | nevents: 400
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | neventsw: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | pid: 3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | pgrp: 3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | corecount: 8
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | event service: False
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | sizes: {0: 2397474, 1: 2397474, 4: 2397764, 11: 2397792, 3239: 2423317, 3240: 2432498, 3243: 2432498, 3248: 2432724}
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | --------------------------------------------------
[2025-07-26 13:19:39] 2025-07-26 17:19:07,718 | INFO     | 
[2025-07-26 13:19:39] 2025-07-26 17:19:07,719 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-26 13:19:39] 2025-07-26 17:19:07,734 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:19:39] 2025-07-26 17:19:07,736 | INFO     | job 6745133748 has completed (purged errors)
[2025-07-26 13:19:39] 2025-07-26 17:19:07,736 | INFO     | overall cleanup function is called
[2025-07-26 13:19:39] 2025-07-26 17:19:08,741 | INFO     | --- collectZombieJob: --- 10, [3883710]
[2025-07-26 13:19:39] 2025-07-26 17:19:08,741 | INFO     | zombie collector waiting for pid 3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:08,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:19:39] 2025-07-26 17:19:08,741 | INFO     | collected zombie processes
[2025-07-26 13:19:39] 2025-07-26 17:19:08,741 | INFO     | will attempt to kill all subprocesses of pid=3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:09,078 | INFO     | process IDs to be killed: [3883710] (in reverse order)
[2025-07-26 13:19:39] 2025-07-26 17:19:09,196 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:19:39] 2025-07-26 17:19:09,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:19:39] 2025-07-26 17:19:09,211 | INFO     | did not find any defunct processes belonging to 3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:09,222 | INFO     | did not find any defunct processes belonging to 3883710
[2025-07-26 13:19:39] 2025-07-26 17:19:09,223 | INFO     | ready for new job
[2025-07-26 13:19:39] 2025-07-26 17:19:09,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:19:39] 2025-07-26 17:19:09,224 | INFO     | ***************************************
[2025-07-26 13:19:39] 2025-07-26 17:19:09,224 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:19:39] 2025-07-26 17:19:09,224 | INFO     | ***************************************
[2025-07-26 13:19:39] 2025-07-26 17:19:09,224 | INFO     | 
[2025-07-26 13:19:39] 2025-07-26 17:19:09,228 | INFO     | architecture information:
[2025-07-26 13:19:39] 2025-07-26 17:19:09,228 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:19:39] 2025-07-26 17:19:09,242 | INFO     | cat /etc/os-release:
[2025-07-26 13:19:39] NAME="CentOS Linux"
[2025-07-26 13:19:39] VERSION="7 (Core)"
[2025-07-26 13:19:39] ID="centos"
[2025-07-26 13:19:39] ID_LIKE="rhel fedora"
[2025-07-26 13:19:39] VERSION_ID="7"
[2025-07-26 13:19:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:19:39] ANSI_COLOR="0;31"
[2025-07-26 13:19:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:19:39] HOME_URL="https://www.centos.org/"
[2025-07-26 13:19:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:19:39] 
[2025-07-26 13:19:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:19:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:19:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:19:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:19:39] 
[2025-07-26 13:19:39] 2025-07-26 17:19:09,242 | INFO     | ***************************************
[2025-07-26 13:19:39] 2025-07-26 17:19:09,745 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | INFO     | sufficient remaining disk space (166791741440 B)
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | INFO     | update_server=False
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:19:39] 2025-07-26 17:19:09,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:19:39] 2025-07-26 17:19:09,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:19:39] 2025-07-26 17:19:09,760 | INFO     | aborting loop
[2025-07-26 13:19:39] 2025-07-26 17:19:09,776 | INFO     | all payload control threads have been joined
[2025-07-26 13:19:39] 2025-07-26 17:19:10,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:19:39] 2025-07-26 17:19:10,677 | INFO     | all data control threads have been joined
[2025-07-26 13:19:39] 2025-07-26 17:19:10,679 | INFO     | all job control threads have been joined
[2025-07-26 13:19:39] 2025-07-26 17:19:10,763 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:10,765 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:10,781 | INFO     | [payload] control thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,108 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,183 | INFO     | [job] validate thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,438 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,463 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,683 | INFO     | [data] control thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,684 | INFO     | [job] control thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,688 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:11,873 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:12,197 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:12,655 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:12,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:19:39] 2025-07-26 17:19:13,732 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:13,764 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:20,181 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:19:39] 2025-07-26 17:19:21,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:19:39] 2025-07-26 17:19:21,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361576736576)>', '<ExcThread(monitor, started 140360873408256)>']
[2025-07-26 13:19:39] 2025-07-26 17:19:26,896 | INFO     | all workflow threads have been joined
[2025-07-26 13:19:39] 2025-07-26 17:19:26,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:19:39] 2025-07-26 17:19:26,897 | INFO     | traces error code: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:26,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | INFO     | PID=3877144 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | INFO     | .. there are 16 such processes running
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:19:39] 2025-07-26 17:19:39,560 | INFO     | [monitor] control thread has ended
[2025-07-26 13:19:39] 2025-07-26 17:19:39,635 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:19:39] 2025-07-26 17:19:39,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:19:39] 2025-07-26 17:19:39,639 [wrapper] pilotpid: 3877144
[2025-07-26 13:19:39] 2025-07-26 17:19:39,641 [wrapper] Pilot exit status: 0
[2025-07-26 13:19:39] 2025-07-26 17:19:39,647 [wrapper] pandaids: 6745133748
[2025-07-26 13:19:39] 2025-07-26 17:19:39,707 [wrapper] cleanup supervisor_pilot 4163990 3877145
[2025-07-26 13:19:39] 2025-07-26 17:19:39,709 [wrapper] Test setup, not cleaning
[2025-07-26 13:19:39] 2025-07-26 17:19:39,711 [wrapper] apfmon messages muted
[2025-07-26 13:19:39] 2025-07-26 17:19:39,713 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:19:39] 2025-07-26 17:19:39,715 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:19:39]  *** Error codes and diagnostics ***
[2025-07-26 13:19:39]     "exeErrorCode": 0,
[2025-07-26 13:19:39]     "exeErrorDiag": "",
[2025-07-26 13:19:39]     "pilotErrorCode": 0,
[2025-07-26 13:19:39]     "pilotErrorDiag": "",
[2025-07-26 13:19:39]  *** Listing of results directory ***
[2025-07-26 13:19:39] total 352268
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 07:03 pilot3.tar.gz
[2025-07-26 13:19:39] -rwx------. 1 boincer umatlas     36292 Jul 26 07:05 runpilot2-wrapper.sh
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 07:05 queuedata.json
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:19:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:24 run_atlas
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:24 job.xml
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas 147086829 Jul 26 12:24 EVNT.45743347._002097.pool.root.1
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:24 start_atlas.sh
[2025-07-26 13:19:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:24 shared
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas    542887 Jul 26 12:24 input.tar.gz
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:24 boinc_lockfile
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 12:24 pandaJob.out
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas    980117 Jul 26 12:24 agis_schedconf.cvmfs.json
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:24 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:19:39] drwx------. 4 boincer umatlas      4096 Jul 26 12:24 pilot3
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 13:09 init_data.xml
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas 208508891 Jul 26 13:18 HITS.45743349._036750.pool.root.1
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:18 boinc_task_state.xml
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas        95 Jul 26 13:18 pilot_heartbeat.json
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas      1028 Jul 26 13:18 memory_monitor_summary.json
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas    287669 Jul 26 13:18 log.45743349._036750.job.log.tgz.1
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas      7770 Jul 26 13:19 heartbeat.json
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:19 wrapper_checkpoint.txt
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:19 boinc_mmap_file
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas       823 Jul 26 13:19 pilotlog.txt
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas    337216 Jul 26 13:19 log.45743349._036750.job.log.1
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas       357 Jul 26 13:19 output.list
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:19 runtime_log
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas    645120 Jul 26 13:19 result.tar.gz
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 13:19 runtime_log.err
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas       651 Jul 26 13:19 0KIODmgtrz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtuRLDmqGocSm.diag
[2025-07-26 13:19:39] -rw-r--r--. 1 boincer umatlas     21674 Jul 26 13:19 stderr.txt
[2025-07-26 13:19:39] HITS file was successfully produced:
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas 208508891 Jul 26 13:18 shared/HITS.pool.root.1
[2025-07-26 13:19:39]  *** Contents of shared directory: ***
[2025-07-26 13:19:39] total 348448
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas 147086829 Jul 26 12:24 ATLAS.root_0
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:24 start_atlas.sh
[2025-07-26 13:19:39] -rw-r--r--. 2 boincer umatlas    542887 Jul 26 12:24 input.tar.gz
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas 208508891 Jul 26 13:18 HITS.pool.root.1
[2025-07-26 13:19:39] -rw-------. 1 boincer umatlas    645120 Jul 26 13:19 result.tar.gz
13:19:41 (3873562): run_atlas exited; CPU time 24375.388605
13:19:41 (3873562): called boinc_finish(0)

</stderr_txt>
]]>

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