Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:11:20 (2864131): wrapper (7.7.26015): starting
13:11:20 (2864131): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:11:20] Arguments: --nthreads 12
[2025-07-27 13:11:20] Threads: 12
[2025-07-27 13:11:20] Checking for CVMFS
[2025-07-27 13:11:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:11:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:11:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:11:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:11:20] 2.13.1.0 4489 33025 109532 148810 2 188 42187201 46080000 878 130560 0 24885996 99.994 1027764 22927 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-27 13:11:20] CVMFS is ok
[2025-07-27 13:11:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:11:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:11:20] Further information can be found at the LHC@home message board.
[2025-07-27 13:11:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:11:20] Checking for apptainer binary...
[2025-07-27 13:11:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:11:20] Running /usr/bin/apptainer --version
[2025-07-27 13:11:20] apptainer version 1.4.1-1.el9
[2025-07-27 13:11:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:11:21] minis01.farm.particle.cz
[2025-07-27 13:11:21] apptainer works
[2025-07-27 13:11:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:11:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:11:21] Starting ATLAS job with PandaID=6745118097
[2025-07-27 13:11:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:13:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:13:31] ]
[2025-07-27 14:13:31] 2025-07-27 12:12:52,334 | INFO     | transferring file log.45743349._036153.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/log.45743349._036153.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-27 14:13:31] 2025-07-27 12:12:52,334 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/log.45743349._036153.job.log.tgz.1 /scratch/.boinc/slots/1/log.45743349._036153.j
[2025-07-27 14:13:31] 2025-07-27 12:12:52,350 | INFO     | adding to output.list: log.45743349._036153.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/4a/log.45743349._036153.job.log.tg
[2025-07-27 14:13:31] 2025-07-27 12:12:52,350 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:13:31] 2025-07-27 12:12:52,351 | INFO     | summary of transferred files:
[2025-07-27 14:13:31] 2025-07-27 12:12:52,351 | INFO     |  -- lfn=log.45743349._036153.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:13:31] 2025-07-27 12:12:52,351 | INFO     | stage-out finished correctly
[2025-07-27 14:13:31] 2025-07-27 12:12:54,208 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:13:31] 2025-07-27 12:12:55,785 | WARNING  | process 2874607 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 14:13:31] 2025-07-27 12:12:55,785 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,785 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,786 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4400807 B
[2025-07-27 14:13:31] 2025-07-27 12:12:55,786 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16255 B
[2025-07-27 14:13:31] 2025-07-27 12:12:55,786 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-27 14:13:31] 2025-07-27 12:12:55,801 | INFO     | sufficient remaining disk space (708350836736 B)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,802 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,802 | INFO     | size of work directory /scratch/.boinc/slots/1/PanDA_Pilot-6745118097: 4692112 B (within 2537553920 B limit)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,802 | INFO     | pfn file=/scratch/.boinc/slots/1/PanDA_Pilot-6745118097/HITS.45743349._036153.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,803 | INFO     | total size of present files: 0 B (workdir size: 4692112 B)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,803 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/HITS.45743349._036153.pool.root.1 since it does not exist
[2025-07-27 14:13:31] 2025-07-27 12:12:55,836 | INFO     | job 6745118097 has state=finished
[2025-07-27 14:13:31] 2025-07-27 12:12:55,836 | INFO     | preparing for final server update for job 6745118097 in state='finished'
[2025-07-27 14:13:31] 2025-07-27 12:12:55,837 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,837 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,837 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:13:31] 2025-07-27 12:12:55,837 | INFO     | job 6745118097 has finished - writing final server update
[2025-07-27 14:13:31] 2025-07-27 12:12:55,837 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:13:31] 2025-07-27 12:12:55,838 | INFO     | executing command: lscpu
[2025-07-27 14:13:31] 2025-07-27 12:12:55,866 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:13:31] 2025-07-27 12:12:55,944 | INFO     | number of running child processes to parent process 2874607: 1
[2025-07-27 14:13:31] 2025-07-27 12:12:55,944 | INFO     | maximum number of monitored processes: 6
[2025-07-27 14:13:31] 2025-07-27 12:12:58,447 | INFO     | monitor loop #279: job 0:6745118097 is in state 'finished'
[2025-07-27 14:13:31] 2025-07-27 12:12:58,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:13:31] 2025-07-27 12:12:58,895 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 14:13:31] 2025-07-27 12:12:58,899 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2590.06065625
[2025-07-27 14:13:31] 2025-07-27 12:12:58,903 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6745118097/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:13:31] 2025-07-27 12:12:58,904 | INFO     | extracted standard info from prmon json
[2025-07-27 14:13:31] 2025-07-27 12:12:58,904 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:13:31] 2025-07-27 12:12:58,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:13:31] 2025-07-27 12:12:58,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:13:31] 2025-07-27 12:12:58,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:13:31] 2025-07-27 12:12:58,905 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:13:31] 2025-07-27 12:12:58,905 | INFO     | sum of square deviations: 46147842.0
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | sum of deviations: 858375042.0
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | mean x: 1753616602.0
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | mean y: 2800149.603773585
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | -- intersect: -32615425517.23558
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | intersect: -32615425517.23558
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | chi2: 0.002049820950339759
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | -- intersect: -32615425517.23558
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | current memory leak: 18.60 B/s (using 53 data points, chi2=0.00)
[2025-07-27 14:13:31] 2025-07-27 12:12:58,906 | INFO     | could have reported an average CPU frequency of 2625 MHz (6 samples)
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | ..............................
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . Timing measurements:
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . get job = 0 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . initial setup = 1 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . payload setup = 5 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . stage-in = 0 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . payload execution = 3660 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . stage-out = 0 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | . log creation = 0 s
[2025-07-27 14:13:31] 2025-07-27 12:12:58,907 | INFO     | ..............................
[2025-07-27 14:13:31] 2025-07-27 12:12:59,085 | INFO     | 
[2025-07-27 14:13:31] 2025-07-27 12:12:59,085 | INFO     | job summary report
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | --------------------------------------------------
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | PanDA job id: 6745118097
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | task id: 45743349
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | errors: (none)
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | pilot state: finished 
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | transexitcode: 0
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | exeerrorcode: 0
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | exeerrordiag: 
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | exitcode: 0
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | exitmsg: OK
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | cpuconsumptiontime: 38918 s
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | nevents: 400
[2025-07-27 14:13:31] 2025-07-27 12:12:59,086 | INFO     | neventsw: 0
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | pid: 2874607
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | pgrp: 2874607
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | corecount: 12
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | event service: False
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | sizes: {0: 2397420, 1: 2397420, 4: 2397710, 11: 2397738, 3669: 2423586, 3670: 2432586, 3672: 2432770, 3677: 2432992}
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | --------------------------------------------------
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | 
[2025-07-27 14:13:31] 2025-07-27 12:12:59,087 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:13:31] 2025-07-27 12:12:59,104 | INFO     | job 6745118097 has completed (purged errors)
[2025-07-27 14:13:31] 2025-07-27 12:12:59,105 | INFO     | overall cleanup function is called
[2025-07-27 14:13:31] 2025-07-27 12:13:00,112 | INFO     | --- collectZombieJob: --- 10, [2874607]
[2025-07-27 14:13:31] 2025-07-27 12:13:00,113 | INFO     | zombie collector waiting for pid 2874607
[2025-07-27 14:13:31] 2025-07-27 12:13:00,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:13:31] 2025-07-27 12:13:00,113 | INFO     | collected zombie processes
[2025-07-27 14:13:31] 2025-07-27 12:13:00,113 | INFO     | will attempt to kill all subprocesses of pid=2874607
[2025-07-27 14:13:31] 2025-07-27 12:13:00,238 | INFO     | process IDs to be killed: [2874607] (in reverse order)
[2025-07-27 14:13:31] 2025-07-27 12:13:00,283 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:13:31] 2025-07-27 12:13:00,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:13:31] 2025-07-27 12:13:00,287 | INFO     | did not find any defunct processes belonging to 2874607
[2025-07-27 14:13:31] 2025-07-27 12:13:00,291 | INFO     | did not find any defunct processes belonging to 2874607
[2025-07-27 14:13:31] 2025-07-27 12:13:00,291 | INFO     | ready for new job
[2025-07-27 14:13:31] 2025-07-27 12:13:00,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:13:31] 2025-07-27 12:13:00,292 | INFO     | ***************************************
[2025-07-27 14:13:31] 2025-07-27 12:13:00,292 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:13:31] 2025-07-27 12:13:00,292 | INFO     | ***************************************
[2025-07-27 14:13:31] 2025-07-27 12:13:00,292 | INFO     | 
[2025-07-27 14:13:31] 2025-07-27 12:13:00,294 | INFO     | architecture information:
[2025-07-27 14:13:31] 2025-07-27 12:13:00,294 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:13:31] 2025-07-27 12:13:00,306 | INFO     | cat /etc/os-release:
[2025-07-27 14:13:31] NAME="CentOS Linux"
[2025-07-27 14:13:31] VERSION="7 (Core)"
[2025-07-27 14:13:31] ID="centos"
[2025-07-27 14:13:31] ID_LIKE="rhel fedora"
[2025-07-27 14:13:31] VERSION_ID="7"
[2025-07-27 14:13:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:13:31] ANSI_COLOR="0;31"
[2025-07-27 14:13:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:13:31] HOME_URL="https://www.centos.org/"
[2025-07-27 14:13:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:13:31] 
[2025-07-27 14:13:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:13:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:13:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:13:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:13:31] 
[2025-07-27 14:13:31] 2025-07-27 12:13:00,306 | INFO     | ***************************************
[2025-07-27 14:13:31] 2025-07-27 12:13:00,809 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-27 14:13:31] 2025-07-27 12:13:00,822 | INFO     | sufficient remaining disk space (708356079616 B)
[2025-07-27 14:13:31] 2025-07-27 12:13:00,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:13:31] 2025-07-27 12:13:00,822 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:13:31] 2025-07-27 12:13:00,822 | INFO     | update_server=False
[2025-07-27 14:13:31] 2025-07-27 12:13:00,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:13:31] 2025-07-27 12:13:00,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:13:31] 2025-07-27 12:13:00,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:13:31] 2025-07-27 12:13:00,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:13:31] 2025-07-27 12:13:00,950 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 14:13:31] 2025-07-27 12:13:00,950 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 14:13:31] 2025-07-27 12:13:00,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:13:31] 2025-07-27 12:13:00,950 | INFO     | will abort loop
[2025-07-27 14:13:31] 2025-07-27 12:13:01,175 | INFO     | all data control threads have been joined
[2025-07-27 14:13:31] 2025-07-27 12:13:01,494 | INFO     | all payload control threads have been joined
[2025-07-27 14:13:31] 2025-07-27 12:13:01,685 | INFO     | all job control threads have been joined
[2025-07-27 14:13:31] 2025-07-27 12:13:01,828 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:01,829 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:01,841 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:01,855 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:01,955 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,178 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,180 | INFO     | [data] control thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,396 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,499 | INFO     | [payload] control thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,690 | INFO     | [job] control thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,786 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:02,829 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:03,146 | INFO     | [job] validate thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:03,213 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:04,829 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:11,217 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:13:31] 2025-07-27 12:13:12,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:13:31] 2025-07-27 12:13:12,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061952235328)>', '<ExcThread(monitor, started 140061450409728)>']
[2025-07-27 14:13:31] 2025-07-27 12:13:17,614 | INFO     | all workflow threads have been joined
[2025-07-27 14:13:31] 2025-07-27 12:13:17,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:13:31] 2025-07-27 12:13:17,614 | INFO     | traces error code: 0
[2025-07-27 14:13:31] 2025-07-27 12:13:17,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:13:31] 2025-07-27 12:13:31,608 | INFO     | PID=2867903 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | INFO     | .. there are 2 such processes running
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:13:31] 2025-07-27 12:13:31,609 | INFO     | [monitor] control thread has ended
[2025-07-27 14:13:31] 2025-07-27 12:13:31,700 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:13:31] 2025-07-27 12:13:31,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:13:31] 2025-07-27 12:13:31,705 [wrapper] pilotpid: 2867903
[2025-07-27 14:13:31] 2025-07-27 12:13:31,707 [wrapper] Pilot exit status: 0
[2025-07-27 14:13:31] 2025-07-27 12:13:31,716 [wrapper] pandaids: 6745118097
[2025-07-27 14:13:31] 2025-07-27 12:13:31,748 [wrapper] cleanup supervisor_pilot 2931838 2867904
[2025-07-27 14:13:31] 2025-07-27 12:13:31,751 [wrapper] Test setup, not cleaning
[2025-07-27 14:13:31] 2025-07-27 12:13:31,753 [wrapper] apfmon messages muted
[2025-07-27 14:13:31] 2025-07-27 12:13:31,755 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:13:31] 2025-07-27 12:13:31,757 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:13:31]  *** Error codes and diagnostics ***
[2025-07-27 14:13:31]     "exeErrorCode": 0,
[2025-07-27 14:13:31]     "exeErrorDiag": "",
[2025-07-27 14:13:31]     "pilotErrorCode": 0,
[2025-07-27 14:13:31]     "pilotErrorDiag": "",
[2025-07-27 14:13:31]  *** Listing of results directory ***
[2025-07-27 14:13:31] total 432456
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc    530466 Jul 26 11:57 pilot3.tar.gz
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc      5112 Jul 26 12:06 queuedata.json
[2025-07-27 14:13:31] -rwx------ 1 boinc boinc     36292 Jul 26 12:07 runpilot2-wrapper.sh
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc       100 Jul 27 13:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:13:31] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 13:11 run_atlas
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc       105 Jul 27 13:11 job.xml
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc 228501577 Jul 27 13:11 EVNT.45743347._000310.pool.root.1
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc      6523 Jul 27 13:11 init_data.xml
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc     15095 Jul 27 13:11 start_atlas.sh
[2025-07-27 14:13:31] drwxrwx--x 2 boinc boinc      4096 Jul 27 13:11 shared
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc    542898 Jul 27 13:11 input.tar.gz
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc         0 Jul 27 13:11 boinc_lockfile
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc      2560 Jul 27 13:11 pandaJob.out
[2025-07-27 14:13:31] -rw------- 1 boinc boinc    980117 Jul 27 13:11 agis_schedconf.cvmfs.json
[2025-07-27 14:13:31] -rw------- 1 boinc boinc   1593052 Jul 27 13:11 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:13:31] drwx------ 4 boinc boinc      4096 Jul 27 13:11 pilot3
[2025-07-27 14:13:31] -rw------- 1 boinc boinc 208957652 Jul 27 14:12 HITS.45743349._036153.pool.root.1
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc       529 Jul 27 14:12 boinc_task_state.xml
[2025-07-27 14:13:31] -rw------- 1 boinc boinc      1015 Jul 27 14:12 memory_monitor_summary.json
[2025-07-27 14:13:31] -rw------- 1 boinc boinc    362559 Jul 27 14:12 log.45743349._036153.job.log.tgz.1
[2025-07-27 14:13:31] -rw------- 1 boinc boinc      7763 Jul 27 14:12 heartbeat.json
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc      8192 Jul 27 14:13 boinc_mmap_file
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc        27 Jul 27 14:13 wrapper_checkpoint.txt
[2025-07-27 14:13:31] -rw------- 1 boinc boinc       822 Jul 27 14:13 pilotlog.txt
[2025-07-27 14:13:31] -rw------- 1 boinc boinc        95 Jul 27 14:13 pilot_heartbeat.json
[2025-07-27 14:13:31] -rw------- 1 boinc boinc    381848 Jul 27 14:13 log.45743349._036153.job.log.1
[2025-07-27 14:13:31] -rw------- 1 boinc boinc       357 Jul 27 14:13 output.list
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc       620 Jul 27 14:13 runtime_log
[2025-07-27 14:13:31] -rw------- 1 boinc boinc    768000 Jul 27 14:13 result.tar.gz
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc      8721 Jul 27 14:13 runtime_log.err
[2025-07-27 14:13:31] -rw------- 1 boinc boinc       661 Jul 27 14:13 1OVMDmwzqz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIb0KDmZBa9Nn.diag
[2025-07-27 14:13:31] -rw-r--r-- 1 boinc boinc     22656 Jul 27 14:13 stderr.txt
[2025-07-27 14:13:31] HITS file was successfully produced:
[2025-07-27 14:13:31] -rw------- 1 boinc boinc 208957652 Jul 27 14:12 shared/HITS.pool.root.1
[2025-07-27 14:13:31]  *** Contents of shared directory: ***
[2025-07-27 14:13:31] total 428520
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc 228501577 Jul 27 13:11 ATLAS.root_0
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc     15095 Jul 27 13:11 start_atlas.sh
[2025-07-27 14:13:31] -rw-r--r-- 2 boinc boinc    542898 Jul 27 13:11 input.tar.gz
[2025-07-27 14:13:31] -rw------- 1 boinc boinc 208957652 Jul 27 14:12 HITS.pool.root.1
[2025-07-27 14:13:31] -rw------- 1 boinc boinc    768000 Jul 27 14:13 result.tar.gz
14:13:33 (2864131): run_atlas exited; CPU time 38951.801943
14:13:33 (2864131): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN