Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:15:56 (1331513): wrapper (7.7.26015): starting
03:15:56 (1331513): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:15:56] Arguments: --nthreads 12
[2025-07-27 03:15:56] Threads: 12
[2025-07-27 03:15:56] Checking for CVMFS
[2025-07-27 03:15:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:15:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:15:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:15:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:15:59] 2.13.1.0 3617 2561 122664 148795 2 233 43446857 46080001 59131 130560 0 16163759 99.960 2201916 27780 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-27 03:15:59] CVMFS is ok
[2025-07-27 03:15:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:15:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:15:59] Further information can be found at the LHC@home message board.
[2025-07-27 03:15:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:15:59] Checking for apptainer binary...
[2025-07-27 03:15:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:15:59] Running /usr/bin/apptainer --version
[2025-07-27 03:15:59] apptainer version 1.4.1-1.el9
[2025-07-27 03:15:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:24:12] mff2101.farm.particle.cz
[2025-07-27 03:24:12] apptainer works
[2025-07-27 03:24:12] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:24:12] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:24:12] Starting ATLAS job with PandaID=6745060455
[2025-07-27 03:24:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:07:33]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:07:33] 2025-07-27 02:55:09,050 | INFO     | executing command: lscpu
[2025-07-27 05:07:33] 2025-07-27 02:55:09,297 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:07:33] 2025-07-27 02:55:10,343 | INFO     | monitor loop #371: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:10,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:11,536 | INFO     | 5404s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 05:07:33] 2025-07-27 02:55:12,848 | INFO     | monitor loop #372: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:12,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:15,356 | INFO     | monitor loop #373: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:15,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:17,862 | INFO     | monitor loop #374: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:17,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:20,370 | INFO     | monitor loop #375: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:20,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:22,877 | INFO     | monitor loop #376: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:22,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:25,381 | INFO     | monitor loop #377: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:25,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:27,889 | INFO     | monitor loop #378: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:27,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:29,741 | INFO     | PID=1371324 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:07:33] 2025-07-27 02:55:29,741 | INFO     | .. there are 100 such processes running
[2025-07-27 05:07:33] 2025-07-27 02:55:30,392 | INFO     | monitor loop #379: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:30,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:32,897 | INFO     | monitor loop #380: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:32,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:35,401 | INFO     | monitor loop #381: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:35,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:37,906 | INFO     | monitor loop #382: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:37,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:40,411 | INFO     | monitor loop #383: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:40,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:42,921 | INFO     | monitor loop #384: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:42,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:45,431 | INFO     | monitor loop #385: job 0:6745060455 is in state 'finished'
[2025-07-27 05:07:33] 2025-07-27 02:55:45,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:07:33] 2025-07-27 02:55:47,553 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 05:07:33] 2025-07-27 02:55:47,585 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2793.6206562500006
[2025-07-27 05:07:33] 2025-07-27 02:55:47,605 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6745060455/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:07:33] 2025-07-27 02:55:47,605 | INFO     | extracted standard info from prmon json
[2025-07-27 05:07:33] 2025-07-27 02:55:47,606 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:07:33] 2025-07-27 02:55:47,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:07:33] 2025-07-27 02:55:47,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:07:33] 2025-07-27 02:55:47,606 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:07:33] 2025-07-27 02:55:47,608 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | sum of deviations: 8024578608.999997
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | mean x: 1753582351.5
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | mean y: 2669699.925
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | -- intersect: -88645113676.81206
[2025-07-27 05:07:33] 2025-07-27 02:55:47,610 | INFO     | intersect: -88645113676.81206
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | chi2: 0.7050772909989305
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | -- intersect: -88645113676.81206
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | current memory leak: 50.55 B/s (using 80 data points, chi2=0.71)
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | could have reported an average CPU frequency of 2821 MHz (6 samples)
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | ..............................
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | . Timing measurements:
[2025-07-27 05:07:33] 2025-07-27 02:55:47,611 | INFO     | . get job = 0 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,612 | INFO     | . initial setup = 3 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,612 | INFO     | . payload setup = 41 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,612 | INFO     | . stage-in = 0 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,612 | INFO     | . payload execution = 5287 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,612 | INFO     | . stage-out = 1 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,613 | INFO     | . log creation = 0 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,613 | INFO     | ..............................
[2025-07-27 05:07:33] 2025-07-27 02:55:47,843 | INFO     | 
[2025-07-27 05:07:33] 2025-07-27 02:55:47,843 | INFO     | job summary report
[2025-07-27 05:07:33] 2025-07-27 02:55:47,843 | INFO     | --------------------------------------------------
[2025-07-27 05:07:33] 2025-07-27 02:55:47,843 | INFO     | PanDA job id: 6745060455
[2025-07-27 05:07:33] 2025-07-27 02:55:47,843 | INFO     | task id: 45743349
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | errors: (none)
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | pilot state: finished 
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | transexitcode: 0
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | exeerrorcode: 0
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | exeerrordiag: 
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | exitcode: 0
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | exitmsg: OK
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | cpuconsumptiontime: 41917 s
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | nevents: 400
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | neventsw: 0
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | pid: 1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | pgrp: 1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:47,844 | INFO     | corecount: 12
[2025-07-27 05:07:33] 2025-07-27 02:55:47,845 | INFO     | event service: False
[2025-07-27 05:07:33] 2025-07-27 02:55:47,845 | INFO     | sizes: {0: 2397304, 1: 2397503, 12: 2397503, 22: 2397531, 28: 2397821, 33: 2397849, 5332: 2424583, 5333: 2424582, 5335: 2433694, 5377: 2433832}
[2025-07-27 05:07:33] 2025-07-27 02:55:47,845 | INFO     | --------------------------------------------------
[2025-07-27 05:07:33] 2025-07-27 02:55:47,845 | INFO     | 
[2025-07-27 05:07:33] 2025-07-27 02:55:47,845 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:07:33] 2025-07-27 02:55:48,036 | INFO     | job 6745060455 has completed (purged errors)
[2025-07-27 05:07:33] 2025-07-27 02:55:48,037 | INFO     | overall cleanup function is called
[2025-07-27 05:07:33] 2025-07-27 02:55:49,049 | INFO     | --- collectZombieJob: --- 10, [1393352]
[2025-07-27 05:07:33] 2025-07-27 02:55:49,049 | INFO     | zombie collector waiting for pid 1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:49,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:07:33] 2025-07-27 02:55:49,049 | INFO     | collected zombie processes
[2025-07-27 05:07:33] 2025-07-27 02:55:49,050 | INFO     | will attempt to kill all subprocesses of pid=1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:49,856 | INFO     | process IDs to be killed: [1393352] (in reverse order)
[2025-07-27 05:07:33] 2025-07-27 02:55:50,339 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:07:33] 2025-07-27 02:55:50,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:07:33] 2025-07-27 02:55:50,372 | INFO     | did not find any defunct processes belonging to 1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:50,401 | INFO     | did not find any defunct processes belonging to 1393352
[2025-07-27 05:07:33] 2025-07-27 02:55:50,402 | INFO     | ready for new job
[2025-07-27 05:07:33] 2025-07-27 02:55:50,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:07:33] 2025-07-27 02:55:50,407 | INFO     | ***************************************
[2025-07-27 05:07:33] 2025-07-27 02:55:50,407 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:07:33] 2025-07-27 02:55:50,407 | INFO     | ***************************************
[2025-07-27 05:07:33] 2025-07-27 02:55:50,407 | INFO     | 
[2025-07-27 05:07:33] 2025-07-27 02:55:50,413 | INFO     | architecture information:
[2025-07-27 05:07:33] 2025-07-27 02:55:50,413 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:07:33] 2025-07-27 02:55:50,540 | INFO     | cat /etc/os-release:
[2025-07-27 05:07:33] NAME="CentOS Linux"
[2025-07-27 05:07:33] VERSION="7 (Core)"
[2025-07-27 05:07:33] ID="centos"
[2025-07-27 05:07:33] ID_LIKE="rhel fedora"
[2025-07-27 05:07:33] VERSION_ID="7"
[2025-07-27 05:07:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:07:33] ANSI_COLOR="0;31"
[2025-07-27 05:07:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:07:33] HOME_URL="https://www.centos.org/"
[2025-07-27 05:07:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:07:33] 
[2025-07-27 05:07:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:07:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:07:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:07:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:07:33] 
[2025-07-27 05:07:33] 2025-07-27 02:55:50,541 | INFO     | ***************************************
[2025-07-27 05:07:33] 2025-07-27 02:55:51,044 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-27 05:07:33] 2025-07-27 02:55:51,177 | INFO     | sufficient remaining disk space (1669888737280 B)
[2025-07-27 05:07:33] 2025-07-27 02:55:51,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:07:33] 2025-07-27 02:55:51,177 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:07:33] 2025-07-27 02:55:51,177 | INFO     | update_server=False
[2025-07-27 05:07:33] 2025-07-27 02:55:51,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:07:33] 2025-07-27 02:55:51,432 | INFO     | all payload control threads have been joined
[2025-07-27 05:07:33] 2025-07-27 02:55:51,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:07:33] 2025-07-27 02:55:51,449 | INFO     | aborting loop
[2025-07-27 05:07:33] 2025-07-27 02:55:51,525 | INFO     | all job control threads have been joined
[2025-07-27 05:07:33] 2025-07-27 02:55:51,599 | INFO     | all data control threads have been joined
[2025-07-27 05:07:33] 2025-07-27 02:55:51,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:07:33] 2025-07-27 02:55:52,183 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,437 | INFO     | [payload] control thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,454 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,531 | INFO     | [job] control thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,608 | INFO     | [data] control thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,625 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,680 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,683 | INFO     | [job] validate thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:07:33] 2025-07-27 02:55:52,887 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:52,986 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:53,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:07:33] 2025-07-27 02:55:53,179 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:53,455 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:53,737 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:53,908 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:55:57,105 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:56:01,262 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:07:33] 2025-07-27 02:56:02,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:07:33] 2025-07-27 02:56:03,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140357790787392)>', '<ExcThread(monitor, started 140357299853056)>']
[2025-07-27 05:07:33] 2025-07-27 02:56:08,882 | INFO     | all workflow threads have been joined
[2025-07-27 05:07:33] 2025-07-27 02:56:08,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:07:33] 2025-07-27 02:56:08,883 | INFO     | traces error code: 0
[2025-07-27 05:07:33] 2025-07-27 02:56:08,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:07:33] 2025-07-27 02:56:21,139 | INFO     | PID=1371324 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:07:33] 2025-07-27 02:56:21,139 | INFO     | .. there are 100 such processes running
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 05:07:33] 2025-07-27 02:56:21,140 | INFO     | [monitor] control thread has ended
[2025-07-27 05:07:33] 2025-07-27 02:56:21,457 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:07:33] 2025-07-27 02:56:21,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:07:33] 2025-07-27 02:56:21,530 [wrapper] pilotpid: 1371324
[2025-07-27 05:07:33] 2025-07-27 02:56:21,559 [wrapper] Pilot exit status: 0
[2025-07-27 05:07:33] 2025-07-27 02:56:21,702 [wrapper] pandaids: 6745060455
[2025-07-27 05:07:33] 2025-07-27 02:56:22,219 [wrapper] cleanup supervisor_pilot 1616933 1371325
[2025-07-27 05:07:33] 2025-07-27 02:56:22,227 [wrapper] Test setup, not cleaning
[2025-07-27 05:07:33] 2025-07-27 02:56:22,270 [wrapper] apfmon messages muted
[2025-07-27 05:07:33] 2025-07-27 02:56:22,305 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:07:33] 2025-07-27 02:56:22,331 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:07:33]  *** Error codes and diagnostics ***
[2025-07-27 05:07:33]     "exeErrorCode": 0,
[2025-07-27 05:07:33]     "exeErrorDiag": "",
[2025-07-27 05:07:33]     "pilotErrorCode": 0,
[2025-07-27 05:07:33]     "pilotErrorDiag": "",
[2025-07-27 05:07:33]  *** Listing of results directory ***
[2025-07-27 05:07:33] total 431340
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc    530466 Jul 25 20:56 pilot3.tar.gz
[2025-07-27 05:07:33] -rwx------ 1 boinc boinc     36292 Jul 25 20:59 runpilot2-wrapper.sh
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc      5112 Jul 25 20:59 queuedata.json
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc       100 Jul 27 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:07:33] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 03:15 run_atlas
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc       105 Jul 27 03:15 job.xml
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc      6664 Jul 27 03:15 init_data.xml
[2025-07-27 05:07:33] -rw-r--r-- 2 boinc boinc 229846873 Jul 27 03:15 EVNT.45743347._001440.pool.root.1
[2025-07-27 05:07:33] drwxrwx--x 2 boinc boinc      4096 Jul 27 03:15 shared
[2025-07-27 05:07:33] -rw-r--r-- 2 boinc boinc    542883 Jul 27 03:15 input.tar.gz
[2025-07-27 05:07:33] -rw-r--r-- 2 boinc boinc     15095 Jul 27 03:15 start_atlas.sh
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc         0 Jul 27 03:15 boinc_lockfile
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc      2562 Jul 27 03:24 pandaJob.out
[2025-07-27 05:07:33] -rw------- 1 boinc boinc    980125 Jul 27 03:25 agis_schedconf.cvmfs.json
[2025-07-27 05:07:33] -rw------- 1 boinc boinc   1593052 Jul 27 03:25 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:07:33] drwx------ 4 boinc boinc      4096 Jul 27 03:25 pilot3
[2025-07-27 05:07:33] -rw------- 1 boinc boinc 206226148 Jul 27 04:54 HITS.45743349._025637.pool.root.1
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc       528 Jul 27 04:54 boinc_task_state.xml
[2025-07-27 05:07:33] -rw------- 1 boinc boinc      1027 Jul 27 04:55 memory_monitor_summary.json
[2025-07-27 05:07:33] -rw------- 1 boinc boinc    369008 Jul 27 04:55 log.45743349._025637.job.log.tgz.1
[2025-07-27 05:07:33] -rw------- 1 boinc boinc      7788 Jul 27 04:55 heartbeat.json
[2025-07-27 05:07:33] -rw------- 1 boinc boinc        95 Jul 27 04:56 pilot_heartbeat.json
[2025-07-27 05:07:33] -rw------- 1 boinc boinc       894 Jul 27 04:56 pilotlog.txt
[2025-07-27 05:07:33] -rw------- 1 boinc boinc    498003 Jul 27 04:56 log.45743349._025637.job.log.1
[2025-07-27 05:07:33] -rw------- 1 boinc boinc       357 Jul 27 04:56 output.list
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc       620 Jul 27 04:56 runtime_log
[2025-07-27 05:07:33] -rw------- 1 boinc boinc    890880 Jul 27 04:56 result.tar.gz
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc      8721 Jul 27 04:56 runtime_log.err
[2025-07-27 05:07:33] -rw------- 1 boinc boinc       665 Jul 27 04:56 AMsKDmZocz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7DQLDmRSUuVn.diag
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc        25 Jul 27 05:07 wrapper_checkpoint.txt
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc      8192 Jul 27 05:07 boinc_mmap_file
[2025-07-27 05:07:33] -rw-r--r-- 1 boinc boinc     22487 Jul 27 05:07 stderr.txt
[2025-07-27 05:07:33] HITS file was successfully produced:
[2025-07-27 05:07:33] -rw------- 1 boinc boinc 206226148 Jul 27 04:54 shared/HITS.pool.root.1
[2025-07-27 05:07:33]  *** Contents of shared directory: ***
[2025-07-27 05:07:34] total 427284
[2025-07-27 05:07:34] -rw-r--r-- 2 boinc boinc 229846873 Jul 27 03:15 ATLAS.root_0
[2025-07-27 05:07:34] -rw-r--r-- 2 boinc boinc    542883 Jul 27 03:15 input.tar.gz
[2025-07-27 05:07:34] -rw-r--r-- 2 boinc boinc     15095 Jul 27 03:15 start_atlas.sh
[2025-07-27 05:07:34] -rw------- 1 boinc boinc 206226148 Jul 27 04:54 HITS.pool.root.1
[2025-07-27 05:07:34] -rw------- 1 boinc boinc    890880 Jul 27 04:56 result.tar.gz
05:07:35 (1331513): run_atlas exited; CPU time 42247.876728
05:07:35 (1331513): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN