Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:56:51 (4021372): wrapper (7.7.26015): starting
11:56:51 (4021372): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 11:56:51] Arguments: --nthreads 8
[2025-07-26 11:56:51] Threads: 8
[2025-07-26 11:56:51] Checking for CVMFS
[2025-07-26 11:56:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 11:56:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 11:56:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 11:56:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 11:56:51] 2.13.1.0 285388 7143 91352 148782 1 188 10935284 40960000 12923 16776704 0 94200783 99.999 289734 29801 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 11:56:51] CVMFS is ok
[2025-07-26 11:56:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 11:56:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 11:56:51] Further information can be found at the LHC@home message board.
[2025-07-26 11:56:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 11:56:51] Checking for apptainer binary...
[2025-07-26 11:56:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 11:56:51] Running /usr/bin/apptainer --version
[2025-07-26 11:56:51] apptainer version 1.4.1-1.el9
[2025-07-26 11:56:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 11:56:52] c-208-36.aglt2.org
[2025-07-26 11:56:52] apptainer works
[2025-07-26 11:56:52] Set ATHENA_PROC_NUMBER=8
[2025-07-26 11:56:52] Set ATHENA_CORE_NUMBER=8
[2025-07-26 11:56:52] Starting ATLAS job with PandaID=6745133113
[2025-07-26 11:56:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 12:52:21]  *** The last 200 lines of the pilot log: ***
[2025-07-26 12:52:21]  protocol_id=None
[2025-07-26 12:52:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 12:52:21]  replicas=None
[2025-07-26 12:52:21]  scope=mc23_13p6TeV
[2025-07-26 12:52:21]  status=None
[2025-07-26 12:52:21]  status_code=0
[2025-07-26 12:52:21]  storage_token=
[2025-07-26 12:52:21]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6745133113/log.45743349._036409.job.log.tgz.1
[2025-07-26 12:52:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/f5/log.45743349._036409.job.log.tgz.1
[2025-07-26 12:52:21]  workdir=None
[2025-07-26 12:52:21] ]
[2025-07-26 12:52:21] 2025-07-26 16:51:41,532 | INFO     | transferring file log.45743349._036409.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745133113/log.45743349._036409.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 12:52:21] 2025-07-26 16:51:41,533 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745133113/log.45743349._036409.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._036409.job
[2025-07-26 12:52:21] 2025-07-26 16:51:41,550 | INFO     | adding to output.list: log.45743349._036409.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/f5/log.45743349._036409.job.log.tg
[2025-07-26 12:52:21] 2025-07-26 16:51:41,551 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 12:52:21] 2025-07-26 16:51:41,551 | INFO     | summary of transferred files:
[2025-07-26 12:52:21] 2025-07-26 16:51:41,551 | INFO     |  -- lfn=log.45743349._036409.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 12:52:21] 2025-07-26 16:51:41,551 | INFO     | stage-out finished correctly
[2025-07-26 12:52:21] 2025-07-26 16:51:41,830 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 12:52:21] 2025-07-26 16:51:43,496 | INFO     | monitor loop #243: job 0:6745133113 is in state 'finished'
[2025-07-26 12:52:21] 2025-07-26 16:51:43,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 12:52:21] 2025-07-26 16:51:44,139 | INFO     | job 6745133113 has state=finished
[2025-07-26 12:52:21] 2025-07-26 16:51:44,140 | INFO     | preparing for final server update for job 6745133113 in state='finished'
[2025-07-26 12:52:21] 2025-07-26 16:51:44,191 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 12:52:21] 2025-07-26 16:51:44,192 | INFO     | this job has now completed (state=finished)
[2025-07-26 12:52:21] 2025-07-26 16:51:44,192 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 12:52:21] 2025-07-26 16:51:44,192 | INFO     | log transfer has been attempted: DONE
[2025-07-26 12:52:21] 2025-07-26 16:51:44,192 | INFO     | job 6745133113 has finished - writing final server update
[2025-07-26 12:52:21] 2025-07-26 16:51:44,192 | INFO     | total number of processed events: 400 (read)
[2025-07-26 12:52:21] 2025-07-26 16:51:44,193 | INFO     | executing command: lscpu
[2025-07-26 12:52:21] 2025-07-26 16:51:44,249 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 12:52:21] 2025-07-26 16:51:45,999 | INFO     | monitor loop #244: job 0:6745133113 is in state 'finished'
[2025-07-26 12:52:21] 2025-07-26 16:51:45,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,687 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 12:52:21] 2025-07-26 16:51:47,692 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3744.2502265624985
[2025-07-26 12:52:21] 2025-07-26 16:51:47,705 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745133113/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,706 | INFO     | extracted standard info from prmon json
[2025-07-26 12:52:21] 2025-07-26 16:51:47,706 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 12:52:21] 2025-07-26 16:51:47,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 12:52:21] 2025-07-26 16:51:47,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 12:52:21] 2025-07-26 16:51:47,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | fitting pss+swap vs Time
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | sum of square deviations: 32179208.0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | sum of deviations: 726754.0000000037
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | mean x: 1753547154.0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | mean y: 2520234.4468085105
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | -- intersect: -37082897.12678779
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | intersect: -37082897.12678779
[2025-07-26 12:52:21] 2025-07-26 16:51:47,708 | INFO     | chi2: 0.00036838041552778137
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | -- intersect: -37082897.12678779
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | current memory leak: 0.02 B/s (using 47 data points, chi2=0.00)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | could have reported an average CPU frequency of 3773 MHz (5 samples)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | ..............................
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . Timing measurements:
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . get job = 0 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . initial setup = 2 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . payload setup = 5 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . stage-in = 0 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . payload execution = 3255 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . stage-out = 0 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | . log creation = 0 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,709 | INFO     | ..............................
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | 
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | job summary report
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | --------------------------------------------------
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | PanDA job id: 6745133113
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | task id: 45743349
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | errors: (none)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | pilot state: finished 
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | transexitcode: 0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | exeerrorcode: 0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | exeerrordiag: 
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | exitcode: 0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | exitmsg: OK
[2025-07-26 12:52:21] 2025-07-26 16:51:47,768 | INFO     | cpuconsumptiontime: 24590 s
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | nevents: 400
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | neventsw: 0
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | pid: 4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | pgrp: 4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | corecount: 8
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | event service: False
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | sizes: {0: 2396647, 1: 2397503, 5: 2397765, 11: 2397821, 3265: 2423373, 3266: 2432555, 3272: 2432725}
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | --------------------------------------------------
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | 
[2025-07-26 12:52:21] 2025-07-26 16:51:47,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-26 12:52:21] 2025-07-26 16:51:47,784 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | job 6745133113 has completed (purged errors)
[2025-07-26 12:52:21] 2025-07-26 16:51:47,785 | INFO     | overall cleanup function is called
[2025-07-26 12:52:21] 2025-07-26 16:51:48,695 | INFO     | PID=4024974 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 12:52:21] 2025-07-26 16:51:48,695 | INFO     | .. there are 16 such processes running
[2025-07-26 12:52:21] 2025-07-26 16:51:48,793 | INFO     | --- collectZombieJob: --- 10, [4031514]
[2025-07-26 12:52:21] 2025-07-26 16:51:48,793 | INFO     | zombie collector waiting for pid 4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:48,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 12:52:21] 2025-07-26 16:51:48,793 | INFO     | collected zombie processes
[2025-07-26 12:52:21] 2025-07-26 16:51:48,793 | INFO     | will attempt to kill all subprocesses of pid=4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:49,139 | INFO     | process IDs to be killed: [4031514] (in reverse order)
[2025-07-26 12:52:21] 2025-07-26 16:51:49,254 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 12:52:21] 2025-07-26 16:51:49,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 12:52:21] 2025-07-26 16:51:49,270 | INFO     | did not find any defunct processes belonging to 4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:49,281 | INFO     | did not find any defunct processes belonging to 4031514
[2025-07-26 12:52:21] 2025-07-26 16:51:49,281 | INFO     | ready for new job
[2025-07-26 12:52:21] 2025-07-26 16:51:49,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 12:52:21] 2025-07-26 16:51:49,282 | INFO     | ***************************************
[2025-07-26 12:52:21] 2025-07-26 16:51:49,283 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 12:52:21] 2025-07-26 16:51:49,283 | INFO     | ***************************************
[2025-07-26 12:52:21] 2025-07-26 16:51:49,283 | INFO     | 
[2025-07-26 12:52:21] 2025-07-26 16:51:49,287 | INFO     | architecture information:
[2025-07-26 12:52:21] 2025-07-26 16:51:49,287 | INFO     | executing command: cat /etc/os-release
[2025-07-26 12:52:21] 2025-07-26 16:51:49,301 | INFO     | cat /etc/os-release:
[2025-07-26 12:52:21] NAME="CentOS Linux"
[2025-07-26 12:52:21] VERSION="7 (Core)"
[2025-07-26 12:52:21] ID="centos"
[2025-07-26 12:52:21] ID_LIKE="rhel fedora"
[2025-07-26 12:52:21] VERSION_ID="7"
[2025-07-26 12:52:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 12:52:21] ANSI_COLOR="0;31"
[2025-07-26 12:52:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 12:52:21] HOME_URL="https://www.centos.org/"
[2025-07-26 12:52:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 12:52:21] 
[2025-07-26 12:52:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 12:52:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 12:52:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 12:52:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 12:52:21] 
[2025-07-26 12:52:21] 2025-07-26 16:51:49,301 | INFO     | ***************************************
[2025-07-26 12:52:21] 2025-07-26 16:51:49,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-26 12:52:21] 2025-07-26 16:51:49,816 | INFO     | sufficient remaining disk space (165989580800 B)
[2025-07-26 12:52:21] 2025-07-26 16:51:49,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 12:52:21] 2025-07-26 16:51:49,816 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 12:52:21] 2025-07-26 16:51:49,817 | INFO     | update_server=False
[2025-07-26 12:52:21] 2025-07-26 16:51:49,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 12:52:21] 2025-07-26 16:51:49,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 12:52:21] 2025-07-26 16:51:49,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:52:21] 2025-07-26 16:51:49,817 | INFO     | aborting loop
[2025-07-26 12:52:21] 2025-07-26 16:51:50,158 | INFO     | all payload control threads have been joined
[2025-07-26 12:52:21] 2025-07-26 16:51:50,257 | INFO     | all data control threads have been joined
[2025-07-26 12:52:21] 2025-07-26 16:51:50,822 | INFO     | [job] retrieve thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:50,823 | INFO     | [job] job monitor thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:50,985 | INFO     | all job control threads have been joined
[2025-07-26 12:52:21] 2025-07-26 16:51:51,163 | INFO     | [payload] control thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,262 | INFO     | [data] control thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,303 | INFO     | [data] copytool_in thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,446 | INFO     | [payload] validate_post thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,539 | INFO     | [job] validate thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,609 | INFO     | [payload] failed_post thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,616 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,813 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,822 | INFO     | [data] copytool_out thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:51,990 | INFO     | [job] control thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:52,292 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:52,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 12:52:21] 2025-07-26 16:51:52,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:52:21] 2025-07-26 16:51:53,784 | INFO     | [job] queue monitor thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:51:56,398 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:52:00,535 | INFO     | job.realtimelogging is not enabled
[2025-07-26 12:52:21] 2025-07-26 16:52:01,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 12:52:21] 2025-07-26 16:52:02,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987755652928)>', '<ExcThread(monitor, started 139987135751936)>']
[2025-07-26 12:52:21] 2025-07-26 16:52:07,220 | INFO     | all workflow threads have been joined
[2025-07-26 12:52:21] 2025-07-26 16:52:07,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 12:52:21] 2025-07-26 16:52:07,221 | INFO     | traces error code: 0
[2025-07-26 12:52:21] 2025-07-26 16:52:07,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 12:52:21] 2025-07-26 16:52:21,178 | INFO     | PID=4024974 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 12:52:21] 2025-07-26 16:52:21,179 | INFO     | .. there are 16 such processes running
[2025-07-26 12:52:21] 2025-07-26 16:52:21,179 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 12:52:21] 2025-07-26 16:52:21,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 12:52:21] 2025-07-26 16:52:21,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 12:52:21] 2025-07-26 16:52:21,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 12:52:21] 2025-07-26 16:52:21,180 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 12:52:21] 2025-07-26 16:52:21,180 | INFO     | [monitor] control thread has ended
[2025-07-26 12:52:21] 2025-07-26 16:52:21,269 [wrapper] ==== pilot stdout END ====
[2025-07-26 12:52:21] 2025-07-26 16:52:21,271 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 12:52:21] 2025-07-26 16:52:21,274 [wrapper] pilotpid: 4024974
[2025-07-26 12:52:21] 2025-07-26 16:52:21,276 [wrapper] Pilot exit status: 0
[2025-07-26 12:52:21] 2025-07-26 16:52:21,286 [wrapper] pandaids: 6745133113
[2025-07-26 12:52:21] 2025-07-26 16:52:21,367 [wrapper] cleanup supervisor_pilot  105830 4024975
[2025-07-26 12:52:21] 2025-07-26 16:52:21,370 [wrapper] Test setup, not cleaning
[2025-07-26 12:52:21] 2025-07-26 16:52:21,372 [wrapper] apfmon messages muted
[2025-07-26 12:52:21] 2025-07-26 16:52:21,375 [wrapper] ==== wrapper stdout END ====
[2025-07-26 12:52:21] 2025-07-26 16:52:21,377 [wrapper] ==== wrapper stderr END ====
[2025-07-26 12:52:21]  *** Error codes and diagnostics ***
[2025-07-26 12:52:21]     "exeErrorCode": 0,
[2025-07-26 12:52:21]     "exeErrorDiag": "",
[2025-07-26 12:52:21]     "pilotErrorCode": 0,
[2025-07-26 12:52:21]     "pilotErrorDiag": "",
[2025-07-26 12:52:21]  *** Listing of results directory ***
[2025-07-26 12:52:21] total 398064
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:25 queuedata.json
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 06:25 pilot3.tar.gz
[2025-07-26 12:52:21] -rwx------. 1 boincer umatlas     36292 Jul 26 06:25 runpilot2-wrapper.sh
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas       100 Jul 26 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 12:52:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 11:56 run_atlas
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas       105 Jul 26 11:56 job.xml
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas 188248064 Jul 26 11:56 EVNT.45743347._002075.pool.root.1
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:56 start_atlas.sh
[2025-07-26 12:52:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 11:56 shared
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 11:56 input.tar.gz
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas         0 Jul 26 11:56 boinc_lockfile
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 11:56 pandaJob.out
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas    980133 Jul 26 11:56 agis_schedconf.cvmfs.json
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas   1593052 Jul 26 11:57 agis_ddmendpoints.agis.ALL.json
[2025-07-26 12:52:21] drwx------. 4 boincer umatlas      4096 Jul 26 11:57 pilot3
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 12:45 init_data.xml
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas       530 Jul 26 12:51 boinc_task_state.xml
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas 214234663 Jul 26 12:51 HITS.45743349._036409.pool.root.1
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas      1030 Jul 26 12:51 memory_monitor_summary.json
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas    288506 Jul 26 12:51 log.45743349._036409.job.log.tgz.1
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas      7761 Jul 26 12:51 heartbeat.json
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas        27 Jul 26 12:52 wrapper_checkpoint.txt
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 12:52 boinc_mmap_file
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas       893 Jul 26 12:52 pilotlog.txt
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas        95 Jul 26 12:52 pilot_heartbeat.json
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas    340202 Jul 26 12:52 log.45743349._036409.job.log.1
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas       357 Jul 26 12:52 output.list
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas       620 Jul 26 12:52 runtime_log
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas    645120 Jul 26 12:52 result.tar.gz
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 12:52 runtime_log.err
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas       651 Jul 26 12:52 PAGMDm3Grz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPqRLDm3gBxqm.diag
[2025-07-26 12:52:21] -rw-r--r--. 1 boincer umatlas     21839 Jul 26 12:52 stderr.txt
[2025-07-26 12:52:21] HITS file was successfully produced:
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas 214234663 Jul 26 12:51 shared/HITS.pool.root.1
[2025-07-26 12:52:21]  *** Contents of shared directory: ***
[2025-07-26 12:52:21] total 394240
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas 188248064 Jul 26 11:56 ATLAS.root_0
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:56 start_atlas.sh
[2025-07-26 12:52:21] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 11:56 input.tar.gz
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas 214234663 Jul 26 12:51 HITS.pool.root.1
[2025-07-26 12:52:21] -rw-------. 1 boincer umatlas    645120 Jul 26 12:52 result.tar.gz
12:52:22 (4021372): run_atlas exited; CPU time 24669.530735
12:52:22 (4021372): called boinc_finish(0)

</stderr_txt>
]]>

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