Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:48:46 (3974646): wrapper (7.7.26015): starting
11:48:46 (3974646): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 11:48:46] Arguments: --nthreads 8
[2025-07-26 11:48:46] Threads: 8
[2025-07-26 11:48:46] Checking for CVMFS
[2025-07-26 11:48:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 11:48:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 11:48:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 11:48:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 11:48:47] 2.13.1.0 285388 7135 92728 148782 1 188 10935284 40960000 12905 16776704 0 94078722 99.999 289733 29807 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 11:48:47] CVMFS is ok
[2025-07-26 11:48:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 11:48:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 11:48:47] Further information can be found at the LHC@home message board.
[2025-07-26 11:48:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 11:48:47] Checking for apptainer binary...
[2025-07-26 11:48:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 11:48:47] Running /usr/bin/apptainer --version
[2025-07-26 11:48:47] apptainer version 1.4.1-1.el9
[2025-07-26 11:48:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 11:48:47] c-208-36.aglt2.org
[2025-07-26 11:48:47] apptainer works
[2025-07-26 11:48:47] Set ATHENA_PROC_NUMBER=8
[2025-07-26 11:48:47] Set ATHENA_CORE_NUMBER=8
[2025-07-26 11:48:47] Starting ATLAS job with PandaID=6745133032
[2025-07-26 11:48:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 12:42:55]  *** The last 200 lines of the pilot log: ***
[2025-07-26 12:42:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 12:42:55]  is_altstaged=None
[2025-07-26 12:42:55]  is_tar=False
[2025-07-26 12:42:55]  lfn=log.45743349._036328.job.log.tgz.1
[2025-07-26 12:42:55]  mtime=0
[2025-07-26 12:42:55]  protocol_id=None
[2025-07-26 12:42:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 12:42:55]  replicas=None
[2025-07-26 12:42:55]  scope=mc23_13p6TeV
[2025-07-26 12:42:55]  status=None
[2025-07-26 12:42:55]  status_code=0
[2025-07-26 12:42:55]  storage_token=
[2025-07-26 12:42:55]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6745133032/log.45743349._036328.job.log.tgz.1
[2025-07-26 12:42:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/5c/log.45743349._036328.job.log.tgz.1
[2025-07-26 12:42:55]  workdir=None
[2025-07-26 12:42:55] ]
[2025-07-26 12:42:55] 2025-07-26 16:42:16,225 | INFO     | transferring file log.45743349._036328.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6745133032/log.45743349._036328.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 12:42:55] 2025-07-26 16:42:16,225 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6745133032/log.45743349._036328.job.log.tgz.1 /tmp/boinchome/slots/6/log.45743349._036328.job
[2025-07-26 12:42:55] 2025-07-26 16:42:16,244 | INFO     | adding to output.list: log.45743349._036328.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/5c/log.45743349._036328.job.log.tg
[2025-07-26 12:42:55] 2025-07-26 16:42:16,245 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 12:42:55] 2025-07-26 16:42:16,245 | INFO     | summary of transferred files:
[2025-07-26 12:42:55] 2025-07-26 16:42:16,245 | INFO     |  -- lfn=log.45743349._036328.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 12:42:55] 2025-07-26 16:42:16,245 | INFO     | stage-out finished correctly
[2025-07-26 12:42:55] 2025-07-26 16:42:16,300 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 12:42:55] 2025-07-26 16:42:17,185 | INFO     | monitor loop #239: job 0:6745133032 is in state 'finished'
[2025-07-26 12:42:55] 2025-07-26 16:42:17,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | job 6745133032 has state=finished
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | preparing for final server update for job 6745133032 in state='finished'
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | this job has now completed (state=finished)
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | log transfer has been attempted: DONE
[2025-07-26 12:42:55] 2025-07-26 16:42:18,931 | INFO     | job 6745133032 has finished - writing final server update
[2025-07-26 12:42:55] 2025-07-26 16:42:18,932 | INFO     | total number of processed events: 400 (read)
[2025-07-26 12:42:55] 2025-07-26 16:42:18,932 | INFO     | executing command: lscpu
[2025-07-26 12:42:55] 2025-07-26 16:42:18,986 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 12:42:55] 2025-07-26 16:42:19,688 | INFO     | monitor loop #240: job 0:6745133032 is in state 'finished'
[2025-07-26 12:42:55] 2025-07-26 16:42:19,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 12:42:55] 2025-07-26 16:42:21,950 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 12:42:55] 2025-07-26 16:42:21,954 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3701.003078124997
[2025-07-26 12:42:55] 2025-07-26 16:42:21,967 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6745133032/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 12:42:55] 2025-07-26 16:42:21,967 | INFO     | extracted standard info from prmon json
[2025-07-26 12:42:55] 2025-07-26 16:42:21,967 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 12:42:55] 2025-07-26 16:42:21,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 12:42:55] 2025-07-26 16:42:21,968 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 12:42:55] 2025-07-26 16:42:21,968 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 12:42:55] 2025-07-26 16:42:21,968 | INFO     | fitting pss+swap vs Time
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | sum of square deviations: 28242390.0
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | sum of deviations: -52067404.0
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | mean x: 1753546609.0
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | mean y: 2531828.533333333
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | -- intersect: 3235353828.4998035
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | intersect: 3235353828.4998035
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | chi2: 0.0008197406177769366
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | -- intersect: 3235353828.4998035
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | current memory leak: -1.84 B/s (using 45 data points, chi2=0.00)
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | could have reported an average CPU frequency of 3765 MHz (5 samples)
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | ..............................
[2025-07-26 12:42:55] 2025-07-26 16:42:21,969 | INFO     | . Timing measurements:
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . get job = 0 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . initial setup = 2 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . payload setup = 6 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . stage-in = 0 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . payload execution = 3174 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . stage-out = 0 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | . log creation = 0 s
[2025-07-26 12:42:55] 2025-07-26 16:42:21,970 | INFO     | ..............................
[2025-07-26 12:42:55] 2025-07-26 16:42:22,025 | INFO     | 
[2025-07-26 12:42:55] 2025-07-26 16:42:22,025 | INFO     | job summary report
[2025-07-26 12:42:55] 2025-07-26 16:42:22,025 | INFO     | --------------------------------------------------
[2025-07-26 12:42:55] 2025-07-26 16:42:22,025 | INFO     | PanDA job id: 6745133032
[2025-07-26 12:42:55] 2025-07-26 16:42:22,025 | INFO     | task id: 45743349
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | errors: (none)
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | pilot state: finished 
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | transexitcode: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | exeerrorcode: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | exeerrordiag: 
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | exitcode: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | exitmsg: OK
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | cpuconsumptiontime: 24030 s
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | nevents: 400
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | neventsw: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | pid: 3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | pgrp: 3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | corecount: 8
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | event service: False
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | sizes: {0: 2397304, 1: 2397503, 4: 2397765, 11: 2397793, 3184: 2423321, 3185: 2432503, 3191: 2432673}
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | --------------------------------------------------
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | 
[2025-07-26 12:42:55] 2025-07-26 16:42:22,026 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | job 6745133032 has completed (purged errors)
[2025-07-26 12:42:55] 2025-07-26 16:42:22,047 | INFO     | overall cleanup function is called
[2025-07-26 12:42:55] 2025-07-26 16:42:23,054 | INFO     | --- collectZombieJob: --- 10, [3986781]
[2025-07-26 12:42:55] 2025-07-26 16:42:23,054 | INFO     | zombie collector waiting for pid 3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:23,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 12:42:55] 2025-07-26 16:42:23,054 | INFO     | collected zombie processes
[2025-07-26 12:42:55] 2025-07-26 16:42:23,054 | INFO     | will attempt to kill all subprocesses of pid=3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:23,379 | INFO     | process IDs to be killed: [3986781] (in reverse order)
[2025-07-26 12:42:55] 2025-07-26 16:42:23,493 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 12:42:55] 2025-07-26 16:42:23,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 12:42:55] 2025-07-26 16:42:23,505 | INFO     | did not find any defunct processes belonging to 3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:23,513 | INFO     | did not find any defunct processes belonging to 3986781
[2025-07-26 12:42:55] 2025-07-26 16:42:23,513 | INFO     | ready for new job
[2025-07-26 12:42:55] 2025-07-26 16:42:23,513 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 12:42:55] 2025-07-26 16:42:23,514 | INFO     | ***************************************
[2025-07-26 12:42:55] 2025-07-26 16:42:23,514 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 12:42:55] 2025-07-26 16:42:23,514 | INFO     | ***************************************
[2025-07-26 12:42:55] 2025-07-26 16:42:23,514 | INFO     | 
[2025-07-26 12:42:55] 2025-07-26 16:42:23,517 | INFO     | architecture information:
[2025-07-26 12:42:55] 2025-07-26 16:42:23,517 | INFO     | executing command: cat /etc/os-release
[2025-07-26 12:42:55] 2025-07-26 16:42:23,531 | INFO     | cat /etc/os-release:
[2025-07-26 12:42:55] NAME="CentOS Linux"
[2025-07-26 12:42:55] VERSION="7 (Core)"
[2025-07-26 12:42:55] ID="centos"
[2025-07-26 12:42:55] ID_LIKE="rhel fedora"
[2025-07-26 12:42:55] VERSION_ID="7"
[2025-07-26 12:42:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 12:42:55] ANSI_COLOR="0;31"
[2025-07-26 12:42:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 12:42:55] HOME_URL="https://www.centos.org/"
[2025-07-26 12:42:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 12:42:55] 
[2025-07-26 12:42:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 12:42:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 12:42:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 12:42:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 12:42:55] 
[2025-07-26 12:42:55] 2025-07-26 16:42:23,531 | INFO     | ***************************************
[2025-07-26 12:42:55] 2025-07-26 16:42:24,034 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-26 12:42:55] 2025-07-26 16:42:24,050 | INFO     | sufficient remaining disk space (166049349632 B)
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | INFO     | update_server=False
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:42:55] 2025-07-26 16:42:24,051 | INFO     | aborting loop
[2025-07-26 12:42:55] 2025-07-26 16:42:24,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 12:42:55] 2025-07-26 16:42:24,397 | INFO     | all data control threads have been joined
[2025-07-26 12:42:55] 2025-07-26 16:42:25,056 | INFO     | [job] job monitor thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,057 | INFO     | [job] retrieve thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,150 | INFO     | all payload control threads have been joined
[2025-07-26 12:42:55] 2025-07-26 16:42:25,254 | INFO     | [payload] validate_post thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,340 | INFO     | [job] validate thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,389 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,403 | INFO     | [data] control thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,519 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:25,576 | INFO     | all job control threads have been joined
[2025-07-26 12:42:55] 2025-07-26 16:42:26,081 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,083 | INFO     | [data] copytool_in thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,153 | INFO     | [payload] failed_post thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,155 | INFO     | [payload] control thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,317 | INFO     | [data] copytool_out thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,581 | INFO     | [job] control thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:26,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 12:42:55] 2025-07-26 16:42:27,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:42:55] 2025-07-26 16:42:28,038 | INFO     | [job] queue monitor thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:30,867 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 12:42:55] 2025-07-26 16:42:31,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137712940864)>', '<ExcThread(monitor, started 140137350534912)>']
[2025-07-26 12:42:55] 2025-07-26 16:42:36,221 | INFO     | all workflow threads have been joined
[2025-07-26 12:42:55] 2025-07-26 16:42:36,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 12:42:55] 2025-07-26 16:42:36,222 | INFO     | traces error code: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:36,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 12:42:55] 2025-07-26 16:42:54,957 | INFO     | PID=3978380 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | INFO     | .. there are 16 such processes running
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 12:42:55] 2025-07-26 16:42:54,958 | INFO     | [monitor] control thread has ended
[2025-07-26 12:42:55] 2025-07-26 16:42:55,047 [wrapper] ==== pilot stdout END ====
[2025-07-26 12:42:55] 2025-07-26 16:42:55,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 12:42:55] 2025-07-26 16:42:55,052 [wrapper] pilotpid: 3978380
[2025-07-26 12:42:55] 2025-07-26 16:42:55,054 [wrapper] Pilot exit status: 0
[2025-07-26 12:42:55] 2025-07-26 16:42:55,063 [wrapper] pandaids: 6745133032
[2025-07-26 12:42:55] 2025-07-26 16:42:55,139 [wrapper] cleanup supervisor_pilot   37529 3978381
[2025-07-26 12:42:55] 2025-07-26 16:42:55,142 [wrapper] Test setup, not cleaning
[2025-07-26 12:42:55] 2025-07-26 16:42:55,145 [wrapper] apfmon messages muted
[2025-07-26 12:42:55] 2025-07-26 16:42:55,147 [wrapper] ==== wrapper stdout END ====
[2025-07-26 12:42:55] 2025-07-26 16:42:55,149 [wrapper] ==== wrapper stderr END ====
[2025-07-26 12:42:55]  *** Error codes and diagnostics ***
[2025-07-26 12:42:55]     "exeErrorCode": 0,
[2025-07-26 12:42:55]     "exeErrorDiag": "",
[2025-07-26 12:42:55]     "pilotErrorCode": 0,
[2025-07-26 12:42:55]     "pilotErrorDiag": "",
[2025-07-26 12:42:55]  *** Listing of results directory ***
[2025-07-26 12:42:55] total 436704
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 06:19 pilot3.tar.gz
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:22 queuedata.json
[2025-07-26 12:42:55] -rwx------. 1 boincer umatlas     36292 Jul 26 06:23 runpilot2-wrapper.sh
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas       100 Jul 26 11:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 12:42:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 11:48 run_atlas
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas       105 Jul 26 11:48 job.xml
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas 229851194 Jul 26 11:48 EVNT.45743347._002072.pool.root.1
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:48 start_atlas.sh
[2025-07-26 12:42:55] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 11:48 shared
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 11:48 input.tar.gz
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas         0 Jul 26 11:48 boinc_lockfile
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 11:48 pandaJob.out
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas    980133 Jul 26 11:48 agis_schedconf.cvmfs.json
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas   1593052 Jul 26 11:48 agis_ddmendpoints.agis.ALL.json
[2025-07-26 12:42:55] drwx------. 4 boincer umatlas      4096 Jul 26 11:48 pilot3
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 12:36 init_data.xml
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas       530 Jul 26 12:41 boinc_task_state.xml
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas 212228833 Jul 26 12:41 HITS.45743349._036328.pool.root.1
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas        95 Jul 26 12:42 pilot_heartbeat.json
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas      1028 Jul 26 12:42 memory_monitor_summary.json
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas    282246 Jul 26 12:42 log.45743349._036328.job.log.tgz.1
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas      7766 Jul 26 12:42 heartbeat.json
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas        27 Jul 26 12:42 wrapper_checkpoint.txt
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 12:42 boinc_mmap_file
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas       823 Jul 26 12:42 pilotlog.txt
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas    333270 Jul 26 12:42 log.45743349._036328.job.log.1
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas       357 Jul 26 12:42 output.list
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas       620 Jul 26 12:42 runtime_log
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas    634880 Jul 26 12:42 result.tar.gz
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 12:42 runtime_log.err
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas       651 Jul 26 12:42 rDaLDm6Erz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmVd0KDmfR5Rym.diag
[2025-07-26 12:42:55] -rw-r--r--. 1 boincer umatlas     21449 Jul 26 12:42 stderr.txt
[2025-07-26 12:42:55] HITS file was successfully produced:
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas 212228833 Jul 26 12:41 shared/HITS.pool.root.1
[2025-07-26 12:42:55]  *** Contents of shared directory: ***
[2025-07-26 12:42:55] total 432896
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas 229851194 Jul 26 11:48 ATLAS.root_0
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:48 start_atlas.sh
[2025-07-26 12:42:55] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 11:48 input.tar.gz
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas 212228833 Jul 26 12:41 HITS.pool.root.1
[2025-07-26 12:42:55] -rw-------. 1 boincer umatlas    634880 Jul 26 12:42 result.tar.gz
12:42:56 (3974646): run_atlas exited; CPU time 24097.151876
12:42:56 (3974646): called boinc_finish(0)

</stderr_txt>
]]>

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