Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:06:43 (3739875): wrapper (7.7.26015): starting
12:06:43 (3739875): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 12:06:43] Arguments: --nthreads 8
[2025-07-26 12:06:43] Threads: 8
[2025-07-26 12:06:43] Checking for CVMFS
[2025-07-26 12:06:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 12:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 12:06:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 12:06:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 12:06:43] 2.13.1.0 4026694 6952 93692 148782 0 188 20954052 40960001 12099 16776704 0 95010636 99.999 253810 59204 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 12:06:43] CVMFS is ok
[2025-07-26 12:06:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 12:06:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 12:06:43] Further information can be found at the LHC@home message board.
[2025-07-26 12:06:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 12:06:43] Checking for apptainer binary...
[2025-07-26 12:06:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 12:06:43] Running /usr/bin/apptainer --version
[2025-07-26 12:06:43] apptainer version 1.4.1-1.el9
[2025-07-26 12:06:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 12:06:43] c-208-38.aglt2.org
[2025-07-26 12:06:43] apptainer works
[2025-07-26 12:06:43] Set ATHENA_PROC_NUMBER=8
[2025-07-26 12:06:43] Set ATHENA_CORE_NUMBER=8
[2025-07-26 12:06:43] Starting ATLAS job with PandaID=6745099107
[2025-07-26 12:06:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:02:18]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:02:18]  is_altstaged=None
[2025-07-26 13:02:18]  is_tar=False
[2025-07-26 13:02:18]  lfn=log.45743349._034067.job.log.tgz.1
[2025-07-26 13:02:18]  mtime=0
[2025-07-26 13:02:18]  protocol_id=None
[2025-07-26 13:02:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 13:02:18]  replicas=None
[2025-07-26 13:02:18]  scope=mc23_13p6TeV
[2025-07-26 13:02:18]  status=None
[2025-07-26 13:02:18]  status_code=0
[2025-07-26 13:02:18]  storage_token=
[2025-07-26 13:02:18]  surl=/tmp/boinchome/slots/13/PanDA_Pilot-6745099107/log.45743349._034067.job.log.tgz.1
[2025-07-26 13:02:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/37/log.45743349._034067.job.log.tgz.1
[2025-07-26 13:02:18]  workdir=None
[2025-07-26 13:02:18] ]
[2025-07-26 13:02:18] 2025-07-26 17:01:42,113 | INFO     | transferring file log.45743349._034067.job.log.tgz.1 from /tmp/boinchome/slots/13/PanDA_Pilot-6745099107/log.45743349._034067.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 13:02:18] 2025-07-26 17:01:42,113 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/13/PanDA_Pilot-6745099107/log.45743349._034067.job.log.tgz.1 /tmp/boinchome/slots/13/log.45743349._034067.j
[2025-07-26 13:02:18] 2025-07-26 17:01:42,128 | INFO     | adding to output.list: log.45743349._034067.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/37/log.45743349._034067.job.log.tg
[2025-07-26 13:02:18] 2025-07-26 17:01:42,129 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:02:18] 2025-07-26 17:01:42,129 | INFO     | summary of transferred files:
[2025-07-26 13:02:18] 2025-07-26 17:01:42,129 | INFO     |  -- lfn=log.45743349._034067.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:02:18] 2025-07-26 17:01:42,129 | INFO     | stage-out finished correctly
[2025-07-26 13:02:18] 2025-07-26 17:01:42,181 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:02:18] 2025-07-26 17:01:42,767 | INFO     | job 6745099107 has state=finished
[2025-07-26 13:02:18] 2025-07-26 17:01:42,767 | INFO     | preparing for final server update for job 6745099107 in state='finished'
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | job 6745099107 has finished - writing final server update
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:02:18] 2025-07-26 17:01:42,768 | INFO     | executing command: lscpu
[2025-07-26 13:02:18] 2025-07-26 17:01:42,823 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:02:18] 2025-07-26 17:01:44,628 | WARNING  | process 3752061 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 13:02:18] 2025-07-26 17:01:44,629 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6745099107/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:02:18] 2025-07-26 17:01:44,966 | INFO     | number of running child processes to parent process 3752061: 1
[2025-07-26 13:02:18] 2025-07-26 17:01:44,966 | INFO     | maximum number of monitored processes: 6
[2025-07-26 13:02:18] 2025-07-26 17:01:46,322 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 13:02:18] 2025-07-26 17:01:46,326 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3743.920093749999
[2025-07-26 13:02:18] 2025-07-26 17:01:46,339 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6745099107/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,340 | INFO     | extracted standard info from prmon json
[2025-07-26 13:02:18] 2025-07-26 17:01:46,340 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:02:18] 2025-07-26 17:01:46,340 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:02:18] 2025-07-26 17:01:46,340 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:02:18] 2025-07-26 17:01:46,340 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | sum of square deviations: 32179208.0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | sum of deviations: 282919159.00000006
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | mean x: 1753547743.0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | mean y: 2512974.361702128
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | -- intersect: -15414654928.462639
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | intersect: -15414654928.462639
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | chi2: 0.00016033935046471588
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | -- intersect: -15414654928.462639
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | current memory leak: 8.79 B/s (using 47 data points, chi2=0.00)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,341 | INFO     | could have reported an average CPU frequency of 3746 MHz (5 samples)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | ..............................
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . Timing measurements:
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . get job = 0 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . initial setup = 2 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . payload setup = 4 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . stage-in = 0 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . payload execution = 3266 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . stage-out = 0 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | . log creation = 0 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,342 | INFO     | ..............................
[2025-07-26 13:02:18] 2025-07-26 17:01:46,395 | INFO     | 
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | job summary report
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | --------------------------------------------------
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | PanDA job id: 6745099107
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | task id: 45743349
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | errors: (none)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | pilot state: finished 
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | transexitcode: 0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | exeerrorcode: 0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | exeerrordiag: 
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | exitcode: 0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | exitmsg: OK
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | cpuconsumptiontime: 23943 s
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | nevents: 400
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | neventsw: 0
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | pid: 3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | pgrp: 3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | corecount: 8
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | event service: False
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3274: 2423320, 3275: 2432375, 3279: 2432545}
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | --------------------------------------------------
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | 
[2025-07-26 13:02:18] 2025-07-26 17:01:46,396 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | job 6745099107 has completed (purged errors)
[2025-07-26 13:02:18] 2025-07-26 17:01:46,414 | INFO     | overall cleanup function is called
[2025-07-26 13:02:18] 2025-07-26 17:01:47,421 | INFO     | --- collectZombieJob: --- 10, [3752061]
[2025-07-26 13:02:18] 2025-07-26 17:01:47,422 | INFO     | zombie collector waiting for pid 3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:47,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:02:18] 2025-07-26 17:01:47,422 | INFO     | collected zombie processes
[2025-07-26 13:02:18] 2025-07-26 17:01:47,422 | INFO     | will attempt to kill all subprocesses of pid=3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:47,754 | INFO     | process IDs to be killed: [3752061] (in reverse order)
[2025-07-26 13:02:18] 2025-07-26 17:01:47,867 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:02:18] 2025-07-26 17:01:47,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:02:18] 2025-07-26 17:01:47,884 | INFO     | did not find any defunct processes belonging to 3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:47,897 | INFO     | did not find any defunct processes belonging to 3752061
[2025-07-26 13:02:18] 2025-07-26 17:01:47,897 | INFO     | ready for new job
[2025-07-26 13:02:18] 2025-07-26 17:01:47,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:02:18] 2025-07-26 17:01:47,898 | INFO     | ***************************************
[2025-07-26 13:02:18] 2025-07-26 17:01:47,898 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:02:18] 2025-07-26 17:01:47,898 | INFO     | ***************************************
[2025-07-26 13:02:18] 2025-07-26 17:01:47,898 | INFO     | 
[2025-07-26 13:02:18] 2025-07-26 17:01:47,903 | INFO     | architecture information:
[2025-07-26 13:02:18] 2025-07-26 17:01:47,903 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:02:18] 2025-07-26 17:01:47,915 | INFO     | cat /etc/os-release:
[2025-07-26 13:02:18] NAME="CentOS Linux"
[2025-07-26 13:02:18] VERSION="7 (Core)"
[2025-07-26 13:02:18] ID="centos"
[2025-07-26 13:02:18] ID_LIKE="rhel fedora"
[2025-07-26 13:02:18] VERSION_ID="7"
[2025-07-26 13:02:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:02:18] ANSI_COLOR="0;31"
[2025-07-26 13:02:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:02:18] HOME_URL="https://www.centos.org/"
[2025-07-26 13:02:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:02:18] 
[2025-07-26 13:02:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:02:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:02:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:02:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:02:18] 
[2025-07-26 13:02:18] 2025-07-26 17:01:47,915 | INFO     | ***************************************
[2025-07-26 13:02:18] 2025-07-26 17:01:48,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | INFO     | sufficient remaining disk space (166651232256 B)
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | INFO     | update_server=False
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:02:18] 2025-07-26 17:01:48,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:02:18] 2025-07-26 17:01:48,432 | INFO     | all data control threads have been joined
[2025-07-26 13:02:18] 2025-07-26 17:01:48,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:02:18] 2025-07-26 17:01:48,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:02:18] 2025-07-26 17:01:48,474 | INFO     | aborting loop
[2025-07-26 13:02:18] 2025-07-26 17:01:49,436 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,438 | INFO     | [data] control thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,479 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,601 | INFO     | [job] validate thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,700 | INFO     | all payload control threads have been joined
[2025-07-26 13:02:18] 2025-07-26 17:01:49,754 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,837 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:49,941 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:50,025 | INFO     | all job control threads have been joined
[2025-07-26 13:02:18] 2025-07-26 17:01:50,111 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:50,438 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:50,667 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:50,672 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:50,705 | INFO     | [payload] control thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:51,031 | INFO     | [job] control thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:51,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:02:18] 2025-07-26 17:01:52,407 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:52,441 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:01:59,001 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:02:18] 2025-07-26 17:02:00,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:02:18] 2025-07-26 17:02:00,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425455200064)>', '<ExcThread(monitor, started 140424828155648)>']
[2025-07-26 13:02:18] 2025-07-26 17:02:05,255 | INFO     | all workflow threads have been joined
[2025-07-26 13:02:18] 2025-07-26 17:02:05,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:02:18] 2025-07-26 17:02:05,257 | INFO     | traces error code: 0
[2025-07-26 13:02:18] 2025-07-26 17:02:05,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:02:18] 2025-07-26 17:02:18,667 | INFO     | PID=3743658 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | INFO     | .. there are 16 such processes running
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:02:18] 2025-07-26 17:02:18,668 | INFO     | [monitor] control thread has ended
[2025-07-26 13:02:18] 2025-07-26 17:02:18,749 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:02:18] 2025-07-26 17:02:18,752 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:02:18] 2025-07-26 17:02:18,754 [wrapper] pilotpid: 3743658
[2025-07-26 13:02:18] 2025-07-26 17:02:18,756 [wrapper] Pilot exit status: 0
[2025-07-26 13:02:18] 2025-07-26 17:02:18,765 [wrapper] pandaids: 6745099107
[2025-07-26 13:02:18] 2025-07-26 17:02:18,846 [wrapper] cleanup supervisor_pilot 4082658 3743659
[2025-07-26 13:02:18] 2025-07-26 17:02:18,849 [wrapper] Test setup, not cleaning
[2025-07-26 13:02:18] 2025-07-26 17:02:18,852 [wrapper] apfmon messages muted
[2025-07-26 13:02:18] 2025-07-26 17:02:18,853 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:02:18] 2025-07-26 17:02:18,855 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:02:18]  *** Error codes and diagnostics ***
[2025-07-26 13:02:18]     "exeErrorCode": 0,
[2025-07-26 13:02:18]     "exeErrorDiag": "",
[2025-07-26 13:02:18]     "pilotErrorCode": 0,
[2025-07-26 13:02:18]     "pilotErrorDiag": "",
[2025-07-26 13:02:18]  *** Listing of results directory ***
[2025-07-26 13:02:18] total 350896
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 03:16 pilot3.tar.gz
[2025-07-26 13:02:18] -rwx------. 1 boincer umatlas     36292 Jul 26 03:19 runpilot2-wrapper.sh
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 03:19 queuedata.json
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas       100 Jul 26 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:02:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 12:06 run_atlas
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas       105 Jul 26 12:06 job.xml
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas 143177964 Jul 26 12:06 EVNT.45743347._001925.pool.root.1
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:06 start_atlas.sh
[2025-07-26 13:02:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 12:06 shared
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 12:06 input.tar.gz
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas         0 Jul 26 12:06 boinc_lockfile
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 12:06 pandaJob.out
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas    980133 Jul 26 12:06 agis_schedconf.cvmfs.json
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas   1593052 Jul 26 12:06 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:02:18] drwx------. 4 boincer umatlas      4096 Jul 26 12:06 pilot3
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 12:58 init_data.xml
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas 210994572 Jul 26 13:01 HITS.45743349._034067.pool.root.1
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:01 boinc_task_state.xml
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas      1028 Jul 26 13:01 memory_monitor_summary.json
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas    294844 Jul 26 13:01 log.45743349._034067.job.log.tgz.1
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas      7761 Jul 26 13:01 heartbeat.json
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas        95 Jul 26 13:02 pilot_heartbeat.json
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas       823 Jul 26 13:02 pilotlog.txt
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:02 boinc_mmap_file
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:02 wrapper_checkpoint.txt
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas    341221 Jul 26 13:02 log.45743349._034067.job.log.1
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas       357 Jul 26 13:02 output.list
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:02 runtime_log
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas    655360 Jul 26 13:02 result.tar.gz
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 13:02 runtime_log.err
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas       651 Jul 26 13:02 0p3NDmaMoz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeWRLDmO5cdQo.diag
[2025-07-26 13:02:18] -rw-r--r--. 1 boincer umatlas     21478 Jul 26 13:02 stderr.txt
[2025-07-26 13:02:18] HITS file was successfully produced:
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas 210994572 Jul 26 13:01 shared/HITS.pool.root.1
[2025-07-26 13:02:18]  *** Contents of shared directory: ***
[2025-07-26 13:02:18] total 347068
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas 143177964 Jul 26 12:06 ATLAS.root_0
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 12:06 start_atlas.sh
[2025-07-26 13:02:18] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 12:06 input.tar.gz
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas 210994572 Jul 26 13:01 HITS.pool.root.1
[2025-07-26 13:02:18] -rw-------. 1 boincer umatlas    655360 Jul 26 13:02 result.tar.gz
13:02:20 (3739875): run_atlas exited; CPU time 24029.205020
13:02:20 (3739875): called boinc_finish(0)

</stderr_txt>
]]>

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