Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:46:06 (3943699): wrapper (7.7.26015): starting
11:46:06 (3943699): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 11:46:06] Arguments: --nthreads 8
[2025-07-26 11:46:06] Threads: 8
[2025-07-26 11:46:06] Checking for CVMFS
[2025-07-26 11:46:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 11:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 11:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 11:46:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 11:46:06] 2.13.1.0 285388 7133 91704 148782 0 188 10935284 40960000 12011 16776704 0 93984613 99.999 289732 29807 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 11:46:06] CVMFS is ok
[2025-07-26 11:46:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 11:46:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 11:46:06] Further information can be found at the LHC@home message board.
[2025-07-26 11:46:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 11:46:06] Checking for apptainer binary...
[2025-07-26 11:46:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 11:46:06] Running /usr/bin/apptainer --version
[2025-07-26 11:46:06] apptainer version 1.4.1-1.el9
[2025-07-26 11:46:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 11:46:06] c-208-36.aglt2.org
[2025-07-26 11:46:06] apptainer works
[2025-07-26 11:46:06] Set ATHENA_PROC_NUMBER=8
[2025-07-26 11:46:06] Set ATHENA_CORE_NUMBER=8
[2025-07-26 11:46:06] Starting ATLAS job with PandaID=6745132888
[2025-07-26 11:46:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 12:40:22]  *** The last 200 lines of the pilot log: ***
[2025-07-26 12:40:22]  protocol_id=None
[2025-07-26 12:40:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 12:40:22]  replicas=None
[2025-07-26 12:40:22]  scope=mc23_13p6TeV
[2025-07-26 12:40:22]  status=None
[2025-07-26 12:40:22]  status_code=0
[2025-07-26 12:40:22]  storage_token=
[2025-07-26 12:40:22]  surl=/tmp/boinchome/slots/14/PanDA_Pilot-6745132888/log.45743349._036184.job.log.tgz.1
[2025-07-26 12:40:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/53/log.45743349._036184.job.log.tgz.1
[2025-07-26 12:40:22]  workdir=None
[2025-07-26 12:40:22] ]
[2025-07-26 12:40:22] 2025-07-26 16:39:44,108 | INFO     | transferring file log.45743349._036184.job.log.tgz.1 from /tmp/boinchome/slots/14/PanDA_Pilot-6745132888/log.45743349._036184.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 12:40:22] 2025-07-26 16:39:44,108 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/14/PanDA_Pilot-6745132888/log.45743349._036184.job.log.tgz.1 /tmp/boinchome/slots/14/log.45743349._036184.j
[2025-07-26 12:40:22] 2025-07-26 16:39:44,125 | INFO     | adding to output.list: log.45743349._036184.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/53/log.45743349._036184.job.log.tg
[2025-07-26 12:40:22] 2025-07-26 16:39:44,126 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 12:40:22] 2025-07-26 16:39:44,126 | INFO     | summary of transferred files:
[2025-07-26 12:40:22] 2025-07-26 16:39:44,126 | INFO     |  -- lfn=log.45743349._036184.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 12:40:22] 2025-07-26 16:39:44,126 | INFO     | stage-out finished correctly
[2025-07-26 12:40:22] 2025-07-26 16:39:44,181 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 12:40:22] 2025-07-26 16:39:44,331 | WARNING  | process 3965701 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 12:40:22] 2025-07-26 16:39:44,331 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6745132888/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 12:40:22] 2025-07-26 16:39:44,661 | INFO     | number of running child processes to parent process 3965701: 1
[2025-07-26 12:40:22] 2025-07-26 16:39:44,661 | INFO     | maximum number of monitored processes: 6
[2025-07-26 12:40:22] 2025-07-26 16:39:46,152 | INFO     | job 6745132888 has state=finished
[2025-07-26 12:40:22] 2025-07-26 16:39:46,152 | INFO     | preparing for final server update for job 6745132888 in state='finished'
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | this job has now completed (state=finished)
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | log transfer has been attempted: DONE
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | job 6745132888 has finished - writing final server update
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | total number of processed events: 400 (read)
[2025-07-26 12:40:22] 2025-07-26 16:39:46,153 | INFO     | executing command: lscpu
[2025-07-26 12:40:22] 2025-07-26 16:39:46,207 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 12:40:22] 2025-07-26 16:39:47,164 | INFO     | monitor loop #238: job 0:6745132888 is in state 'finished'
[2025-07-26 12:40:22] 2025-07-26 16:39:47,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,597 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 12:40:22] 2025-07-26 16:39:49,602 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3735.6782109375004
[2025-07-26 12:40:22] 2025-07-26 16:39:49,615 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6745132888/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,615 | INFO     | extracted standard info from prmon json
[2025-07-26 12:40:22] 2025-07-26 16:39:49,615 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 12:40:22] 2025-07-26 16:39:49,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 12:40:22] 2025-07-26 16:39:49,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 12:40:22] 2025-07-26 16:39:49,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | fitting pss+swap vs Time
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | sum of square deviations: 30168007.5
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | sum of deviations: -270735995.0
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | mean x: 1753546476.5
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | mean y: 2516031.2608695654
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | -- intersect: 15739324307.179377
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | intersect: 15739324307.179377
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | chi2: 0.0007222371287091379
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | -- intersect: 15739324307.179377
[2025-07-26 12:40:22] 2025-07-26 16:39:49,617 | INFO     | current memory leak: -8.97 B/s (using 46 data points, chi2=0.00)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | could have reported an average CPU frequency of 3727 MHz (5 samples)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | ..............................
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . Timing measurements:
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . get job = 0 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . initial setup = 2 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . payload setup = 4 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . stage-in = 0 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . payload execution = 3185 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . stage-out = 0 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | . log creation = 0 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,618 | INFO     | ..............................
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | 
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | job summary report
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | --------------------------------------------------
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | PanDA job id: 6745132888
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | task id: 45743349
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | errors: (none)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | pilot state: finished 
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | transexitcode: 0
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | exeerrorcode: 0
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | exeerrordiag: 
[2025-07-26 12:40:22] 2025-07-26 16:39:49,674 | INFO     | exitcode: 0
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | exitmsg: OK
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | cpuconsumptiontime: 23953 s
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | nevents: 400
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | neventsw: 0
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | pid: 3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | pgrp: 3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | corecount: 8
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | event service: False
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3193: 2423292, 3194: 2432347, 3200: 2432517}
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | --------------------------------------------------
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | 
[2025-07-26 12:40:22] 2025-07-26 16:39:49,675 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-07-26 12:40:22] 2025-07-26 16:39:49,690 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | job 6745132888 has completed (purged errors)
[2025-07-26 12:40:22] 2025-07-26 16:39:49,691 | INFO     | overall cleanup function is called
[2025-07-26 12:40:22] 2025-07-26 16:39:50,698 | INFO     | --- collectZombieJob: --- 10, [3965701]
[2025-07-26 12:40:22] 2025-07-26 16:39:50,698 | INFO     | zombie collector waiting for pid 3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:50,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 12:40:22] 2025-07-26 16:39:50,698 | INFO     | collected zombie processes
[2025-07-26 12:40:22] 2025-07-26 16:39:50,698 | INFO     | will attempt to kill all subprocesses of pid=3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:51,026 | INFO     | process IDs to be killed: [3965701] (in reverse order)
[2025-07-26 12:40:22] 2025-07-26 16:39:51,140 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 12:40:22] 2025-07-26 16:39:51,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 12:40:22] 2025-07-26 16:39:51,156 | INFO     | did not find any defunct processes belonging to 3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:51,170 | INFO     | did not find any defunct processes belonging to 3965701
[2025-07-26 12:40:22] 2025-07-26 16:39:51,170 | INFO     | ready for new job
[2025-07-26 12:40:22] 2025-07-26 16:39:51,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 12:40:22] 2025-07-26 16:39:51,172 | INFO     | ***************************************
[2025-07-26 12:40:22] 2025-07-26 16:39:51,172 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 12:40:22] 2025-07-26 16:39:51,172 | INFO     | ***************************************
[2025-07-26 12:40:22] 2025-07-26 16:39:51,172 | INFO     | 
[2025-07-26 12:40:22] 2025-07-26 16:39:51,176 | INFO     | architecture information:
[2025-07-26 12:40:22] 2025-07-26 16:39:51,176 | INFO     | executing command: cat /etc/os-release
[2025-07-26 12:40:22] 2025-07-26 16:39:51,189 | INFO     | cat /etc/os-release:
[2025-07-26 12:40:22] NAME="CentOS Linux"
[2025-07-26 12:40:22] VERSION="7 (Core)"
[2025-07-26 12:40:22] ID="centos"
[2025-07-26 12:40:22] ID_LIKE="rhel fedora"
[2025-07-26 12:40:22] VERSION_ID="7"
[2025-07-26 12:40:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 12:40:22] ANSI_COLOR="0;31"
[2025-07-26 12:40:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 12:40:22] HOME_URL="https://www.centos.org/"
[2025-07-26 12:40:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 12:40:22] 
[2025-07-26 12:40:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 12:40:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 12:40:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 12:40:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 12:40:22] 
[2025-07-26 12:40:22] 2025-07-26 16:39:51,189 | INFO     | ***************************************
[2025-07-26 12:40:22] 2025-07-26 16:39:51,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-07-26 12:40:22] 2025-07-26 16:39:51,707 | INFO     | sufficient remaining disk space (165990629376 B)
[2025-07-26 12:40:22] 2025-07-26 16:39:51,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 12:40:22] 2025-07-26 16:39:51,707 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 12:40:22] 2025-07-26 16:39:51,707 | INFO     | update_server=False
[2025-07-26 12:40:22] 2025-07-26 16:39:51,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 12:40:22] 2025-07-26 16:39:51,945 | INFO     | all payload control threads have been joined
[2025-07-26 12:40:22] 2025-07-26 16:39:52,174 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 12:40:22] 2025-07-26 16:39:52,175 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 12:40:22] 2025-07-26 16:39:52,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:40:22] 2025-07-26 16:39:52,175 | INFO     | will abort loop
[2025-07-26 12:40:22] 2025-07-26 16:39:52,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 12:40:22] 2025-07-26 16:39:52,338 | INFO     | all data control threads have been joined
[2025-07-26 12:40:22] 2025-07-26 16:39:52,712 | INFO     | [job] retrieve thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:52,911 | INFO     | [data] copytool_in thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:52,950 | INFO     | [payload] control thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,014 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,018 | INFO     | all job control threads have been joined
[2025-07-26 12:40:22] 2025-07-26 16:39:53,179 | INFO     | [job] job monitor thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,343 | INFO     | [data] control thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,388 | INFO     | [payload] failed_post thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,421 | INFO     | [job] validate thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,645 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:53,714 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:54,024 | INFO     | [job] control thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:54,059 | INFO     | [payload] validate_post thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:54,196 | INFO     | [data] copytool_out thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:54,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 12:40:22] 2025-07-26 16:39:54,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 12:40:22] 2025-07-26 16:39:55,686 | INFO     | [job] queue monitor thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:39:58,751 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:40:01,906 | INFO     | job.realtimelogging is not enabled
[2025-07-26 12:40:22] 2025-07-26 16:40:02,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 12:40:22] 2025-07-26 16:40:03,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140441613330240)>', '<ExcThread(monitor, started 140440984606464)>']
[2025-07-26 12:40:22] 2025-07-26 16:40:08,932 | INFO     | all workflow threads have been joined
[2025-07-26 12:40:22] 2025-07-26 16:40:08,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 12:40:22] 2025-07-26 16:40:08,932 | INFO     | traces error code: 0
[2025-07-26 12:40:22] 2025-07-26 16:40:08,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 12:40:22] 2025-07-26 16:40:22,596 | INFO     | PID=3948980 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | INFO     | .. there are 16 such processes running
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 12:40:22] 2025-07-26 16:40:22,597 | INFO     | [monitor] control thread has ended
[2025-07-26 12:40:22] 2025-07-26 16:40:22,686 [wrapper] ==== pilot stdout END ====
[2025-07-26 12:40:22] 2025-07-26 16:40:22,689 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 12:40:22] 2025-07-26 16:40:22,691 [wrapper] pilotpid: 3948980
[2025-07-26 12:40:22] 2025-07-26 16:40:22,693 [wrapper] Pilot exit status: 0
[2025-07-26 12:40:22] 2025-07-26 16:40:22,702 [wrapper] pandaids: 6745132888
[2025-07-26 12:40:22] 2025-07-26 16:40:22,779 [wrapper] cleanup supervisor_pilot   17380 3948981
[2025-07-26 12:40:22] 2025-07-26 16:40:22,782 [wrapper] Test setup, not cleaning
[2025-07-26 12:40:22] 2025-07-26 16:40:22,784 [wrapper] apfmon messages muted
[2025-07-26 12:40:22] 2025-07-26 16:40:22,786 [wrapper] ==== wrapper stdout END ====
[2025-07-26 12:40:22] 2025-07-26 16:40:22,788 [wrapper] ==== wrapper stderr END ====
[2025-07-26 12:40:22]  *** Error codes and diagnostics ***
[2025-07-26 12:40:22]     "exeErrorCode": 0,
[2025-07-26 12:40:22]     "exeErrorDiag": "",
[2025-07-26 12:40:22]     "pilotErrorCode": 0,
[2025-07-26 12:40:22]     "pilotErrorDiag": "",
[2025-07-26 12:40:22]  *** Listing of results directory ***
[2025-07-26 12:40:22] total 351132
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 05:57 pilot3.tar.gz
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:15 queuedata.json
[2025-07-26 12:40:22] -rwx------. 1 boincer umatlas     36292 Jul 26 06:16 runpilot2-wrapper.sh
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas       100 Jul 26 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 12:40:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 11:46 run_atlas
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas       105 Jul 26 11:46 job.xml
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas 146827393 Jul 26 11:46 EVNT.45743347._002062.pool.root.1
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:46 start_atlas.sh
[2025-07-26 12:40:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 11:46 shared
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 11:46 input.tar.gz
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas         0 Jul 26 11:46 boinc_lockfile
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 11:46 pandaJob.out
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas    980133 Jul 26 11:46 agis_schedconf.cvmfs.json
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas   1593052 Jul 26 11:46 agis_ddmendpoints.agis.ALL.json
[2025-07-26 12:40:22] drwx------. 4 boincer umatlas      4096 Jul 26 11:46 pilot3
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 12:36 init_data.xml
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas       529 Jul 26 12:39 boinc_task_state.xml
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas 207604270 Jul 26 12:39 HITS.45743349._036184.pool.root.1
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas        95 Jul 26 12:39 pilot_heartbeat.json
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas      1028 Jul 26 12:39 memory_monitor_summary.json
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas    290671 Jul 26 12:39 log.45743349._036184.job.log.tgz.1
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas      7765 Jul 26 12:39 heartbeat.json
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas        27 Jul 26 12:40 wrapper_checkpoint.txt
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 12:40 boinc_mmap_file
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas       823 Jul 26 12:40 pilotlog.txt
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas    334422 Jul 26 12:40 log.45743349._036184.job.log.1
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas       357 Jul 26 12:40 output.list
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas       620 Jul 26 12:40 runtime_log
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas    645120 Jul 26 12:40 result.tar.gz
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 12:40 runtime_log.err
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas       651 Jul 26 12:40 IUMODmq7qz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRpRLDm2qU2mn.diag
[2025-07-26 12:40:22] -rw-r--r--. 1 boincer umatlas     21787 Jul 26 12:40 stderr.txt
[2025-07-26 12:40:22] HITS file was successfully produced:
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas 207604270 Jul 26 12:39 shared/HITS.pool.root.1
[2025-07-26 12:40:22]  *** Contents of shared directory: ***
[2025-07-26 12:40:22] total 347316
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas 146827393 Jul 26 11:46 ATLAS.root_0
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:46 start_atlas.sh
[2025-07-26 12:40:22] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 11:46 input.tar.gz
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas 207604270 Jul 26 12:39 HITS.pool.root.1
[2025-07-26 12:40:22] -rw-------. 1 boincer umatlas    645120 Jul 26 12:40 result.tar.gz
12:40:24 (3943699): run_atlas exited; CPU time 24034.387665
12:40:24 (3943699): called boinc_finish(0)

</stderr_txt>
]]>

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