Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:33:40 (1361379): wrapper (7.7.26015): starting
13:33:40 (1361379): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 13:33:40] Arguments: --nthreads 12
[2025-07-26 13:33:40] Threads: 12
[2025-07-26 13:33:40] Checking for CVMFS
[2025-07-26 13:33:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:33:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:33:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:33:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:33:40] 2.13.0.0 842134 17230 357956 148784 0 104 32082321 32935936 12238 16776704 0 39262587 99.702 70337024 32697 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 13:33:40] CVMFS is ok
[2025-07-26 13:33:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:33:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 13:33:40] Further information can be found at the LHC@home message board.
[2025-07-26 13:33:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:33:40] Checking for apptainer binary...
[2025-07-26 13:33:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 13:33:40] Running /usr/bin/apptainer --version
[2025-07-26 13:33:40] apptainer version 1.4.1-1.el9
[2025-07-26 13:33:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:33:41] c6-5-37-2.aglt2.org
[2025-07-26 13:33:41] apptainer works
[2025-07-26 13:33:41] Set ATHENA_PROC_NUMBER=12
[2025-07-26 13:33:41] Set ATHENA_CORE_NUMBER=12
[2025-07-26 13:33:41] Starting ATLAS job with PandaID=6745132885
[2025-07-26 13:33:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:12:49]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:12:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 15:12:49]  replicas=None
[2025-07-26 15:12:49]  scope=mc23_13p6TeV
[2025-07-26 15:12:49]  status=None
[2025-07-26 15:12:49]  status_code=0
[2025-07-26 15:12:49]  storage_token=
[2025-07-26 15:12:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745132885/log.45743349._036181.job.log.tgz.1
[2025-07-26 15:12:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/ae/log.45743349._036181.job.log.tgz.1
[2025-07-26 15:12:49]  workdir=None
[2025-07-26 15:12:49] ]
[2025-07-26 15:12:49] 2025-07-26 19:12:10,111 | INFO     | transferring file log.45743349._036181.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745132885/log.45743349._036181.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 15:12:49] 2025-07-26 19:12:10,111 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745132885/log.45743349._036181.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._036181.job
[2025-07-26 15:12:49] 2025-07-26 19:12:10,131 | INFO     | adding to output.list: log.45743349._036181.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/ae/log.45743349._036181.job.log.tg
[2025-07-26 15:12:49] 2025-07-26 19:12:10,133 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:12:49] 2025-07-26 19:12:10,133 | INFO     | summary of transferred files:
[2025-07-26 15:12:49] 2025-07-26 19:12:10,133 | INFO     |  -- lfn=log.45743349._036181.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:12:49] 2025-07-26 19:12:10,134 | INFO     | stage-out finished correctly
[2025-07-26 15:12:49] 2025-07-26 19:12:10,480 | WARNING  | process 1372578 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 15:12:49] 2025-07-26 19:12:10,481 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745132885/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:12:49] 2025-07-26 19:12:10,708 | INFO     | number of running child processes to parent process 1372578: 1
[2025-07-26 15:12:49] 2025-07-26 19:12:10,708 | INFO     | maximum number of monitored processes: 6
[2025-07-26 15:12:49] 2025-07-26 19:12:10,947 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:12:49] 2025-07-26 19:12:12,404 | INFO     | job 6745132885 has state=finished
[2025-07-26 15:12:49] 2025-07-26 19:12:12,404 | INFO     | preparing for final server update for job 6745132885 in state='finished'
[2025-07-26 15:12:49] 2025-07-26 19:12:12,405 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:12:49] 2025-07-26 19:12:12,405 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:12:49] 2025-07-26 19:12:12,405 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:12:49] 2025-07-26 19:12:12,405 | INFO     | job 6745132885 has finished - writing final server update
[2025-07-26 15:12:49] 2025-07-26 19:12:12,406 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:12:49] 2025-07-26 19:12:12,407 | INFO     | executing command: lscpu
[2025-07-26 15:12:49] 2025-07-26 19:12:12,464 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:12:49] 2025-07-26 19:12:12,546 | INFO     | PID=1365487 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 15:12:49] 2025-07-26 19:12:12,547 | INFO     | .. there are 14 such processes running
[2025-07-26 15:12:49] 2025-07-26 19:12:13,211 | INFO     | monitor loop #351: job 0:6745132885 is in state 'finished'
[2025-07-26 15:12:49] 2025-07-26 19:12:13,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:12:49] 2025-07-26 19:12:15,714 | INFO     | monitor loop #352: job 0:6745132885 is in state 'finished'
[2025-07-26 15:12:49] 2025-07-26 19:12:15,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:12:49] 2025-07-26 19:12:16,993 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 15:12:49] 2025-07-26 19:12:17,000 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2770.5024285714285
[2025-07-26 15:12:49] 2025-07-26 19:12:17,009 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745132885/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,010 | INFO     | extracted standard info from prmon json
[2025-07-26 15:12:49] 2025-07-26 19:12:17,010 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:12:49] 2025-07-26 19:12:17,010 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:12:49] 2025-07-26 19:12:17,010 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:12:49] 2025-07-26 19:12:17,011 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:12:49] 2025-07-26 19:12:17,013 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:12:49] 2025-07-26 19:12:17,013 | INFO     | sum of square deviations: 218572525.64044902
[2025-07-26 15:12:49] 2025-07-26 19:12:17,013 | INFO     | sum of deviations: -16571825598.741583
[2025-07-26 15:12:49] 2025-07-26 19:12:17,013 | INFO     | mean x: 1753554260.1235955
[2025-07-26 15:12:49] 2025-07-26 19:12:17,013 | INFO     | mean y: 2521756.0674157306
[2025-07-26 15:12:49] 2025-07-26 19:12:17,014 | INFO     | -- intersect: 132954251583.72874
[2025-07-26 15:12:49] 2025-07-26 19:12:17,014 | INFO     | intersect: 132954251583.72874
[2025-07-26 15:12:49] 2025-07-26 19:12:17,014 | INFO     | chi2: 0.18215153067648782
[2025-07-26 15:12:49] 2025-07-26 19:12:17,014 | INFO     | -- intersect: 132954251583.72874
[2025-07-26 15:12:49] 2025-07-26 19:12:17,014 | INFO     | current memory leak: -75.82 B/s (using 89 data points, chi2=0.18)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | could have reported an average CPU frequency of 2681 MHz (7 samples)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | ..............................
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . Timing measurements:
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . get job = 0 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . initial setup = 3 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . payload setup = 9 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . stage-in = 0 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . payload execution = 5861 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . stage-out = 0 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | . log creation = 0 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,015 | INFO     | ..............................
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | 
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | job summary report
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | --------------------------------------------------
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | PanDA job id: 6745132885
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | task id: 45743349
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | errors: (none)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | pilot state: finished 
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | transexitcode: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | exeerrorcode: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:17,091 | INFO     | exeerrordiag: 
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | exitcode: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | exitmsg: OK
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | cpuconsumptiontime: 46660 s
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | nevents: 400
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | neventsw: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | pid: 1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | pgrp: 1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | corecount: 12
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | event service: False
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | sizes: {0: 2397475, 1: 2397475, 7: 2397765, 11: 2397793, 5874: 2424467, 5876: 2433465, 5877: 2433649, 5883: 2433843}
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | --------------------------------------------------
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | 
[2025-07-26 15:12:49] 2025-07-26 19:12:17,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 15:12:49] 2025-07-26 19:12:17,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | job 6745132885 has completed (purged errors)
[2025-07-26 15:12:49] 2025-07-26 19:12:17,112 | INFO     | overall cleanup function is called
[2025-07-26 15:12:49] 2025-07-26 19:12:18,119 | INFO     | --- collectZombieJob: --- 10, [1372578]
[2025-07-26 15:12:49] 2025-07-26 19:12:18,119 | INFO     | zombie collector waiting for pid 1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:18,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:12:49] 2025-07-26 19:12:18,119 | INFO     | collected zombie processes
[2025-07-26 15:12:49] 2025-07-26 19:12:18,119 | INFO     | will attempt to kill all subprocesses of pid=1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:18,352 | INFO     | process IDs to be killed: [1372578] (in reverse order)
[2025-07-26 15:12:49] 2025-07-26 19:12:18,444 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:12:49] 2025-07-26 19:12:18,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:12:49] 2025-07-26 19:12:18,455 | INFO     | did not find any defunct processes belonging to 1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:18,464 | INFO     | did not find any defunct processes belonging to 1372578
[2025-07-26 15:12:49] 2025-07-26 19:12:18,464 | INFO     | ready for new job
[2025-07-26 15:12:49] 2025-07-26 19:12:18,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:12:49] 2025-07-26 19:12:18,466 | INFO     | ***************************************
[2025-07-26 15:12:49] 2025-07-26 19:12:18,466 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:12:49] 2025-07-26 19:12:18,466 | INFO     | ***************************************
[2025-07-26 15:12:49] 2025-07-26 19:12:18,466 | INFO     | 
[2025-07-26 15:12:49] 2025-07-26 19:12:18,482 | INFO     | architecture information:
[2025-07-26 15:12:49] 2025-07-26 19:12:18,483 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:12:49] 2025-07-26 19:12:18,496 | INFO     | cat /etc/os-release:
[2025-07-26 15:12:49] NAME="CentOS Linux"
[2025-07-26 15:12:49] VERSION="7 (Core)"
[2025-07-26 15:12:49] ID="centos"
[2025-07-26 15:12:49] ID_LIKE="rhel fedora"
[2025-07-26 15:12:49] VERSION_ID="7"
[2025-07-26 15:12:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:12:49] ANSI_COLOR="0;31"
[2025-07-26 15:12:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:12:49] HOME_URL="https://www.centos.org/"
[2025-07-26 15:12:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:12:49] 
[2025-07-26 15:12:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:12:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:12:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:12:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:12:49] 
[2025-07-26 15:12:49] 2025-07-26 19:12:18,496 | INFO     | ***************************************
[2025-07-26 15:12:49] 2025-07-26 19:12:18,998 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 15:12:49] 2025-07-26 19:12:19,012 | INFO     | sufficient remaining disk space (76537659392 B)
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | INFO     | update_server=False
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:12:49] 2025-07-26 19:12:19,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:12:49] 2025-07-26 19:12:19,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:12:49] 2025-07-26 19:12:19,224 | INFO     | aborting loop
[2025-07-26 15:12:49] 2025-07-26 19:12:19,447 | INFO     | all job control threads have been joined
[2025-07-26 15:12:49] 2025-07-26 19:12:19,497 | INFO     | all payload control threads have been joined
[2025-07-26 15:12:49] 2025-07-26 19:12:19,752 | INFO     | all data control threads have been joined
[2025-07-26 15:12:49] 2025-07-26 19:12:20,018 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,019 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,229 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,234 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,362 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,421 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,452 | INFO     | [job] control thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,502 | INFO     | [payload] control thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,571 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:20,757 | INFO     | [data] control thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:21,019 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:21,046 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:21,165 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:21,210 | INFO     | [job] validate thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:21,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:12:49] 2025-07-26 19:12:25,544 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:12:49] 2025-07-26 19:12:26,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965160597312)>', '<ExcThread(monitor, started 139964478101248)>']
[2025-07-26 15:12:49] 2025-07-26 19:12:31,318 | INFO     | all workflow threads have been joined
[2025-07-26 15:12:49] 2025-07-26 19:12:31,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:12:49] 2025-07-26 19:12:31,319 | INFO     | traces error code: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:31,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:12:49] 2025-07-26 19:12:48,926 | INFO     | PID=1365487 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 15:12:49] 2025-07-26 19:12:48,926 | INFO     | .. there are 14 such processes running
[2025-07-26 15:12:49] 2025-07-26 19:12:48,926 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:12:49] 2025-07-26 19:12:48,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:12:49] 2025-07-26 19:12:48,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:12:49] 2025-07-26 19:12:48,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:12:49] 2025-07-26 19:12:48,927 | INFO     | [monitor] control thread has ended
[2025-07-26 15:12:49] 2025-07-26 19:12:49,092 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:12:49] 2025-07-26 19:12:49,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:12:49] 2025-07-26 19:12:49,098 [wrapper] pilotpid: 1365487
[2025-07-26 15:12:49] 2025-07-26 19:12:49,101 [wrapper] Pilot exit status: 0
[2025-07-26 15:12:49] 2025-07-26 19:12:49,111 [wrapper] pandaids: 6745132885
[2025-07-26 15:12:49] 2025-07-26 19:12:49,172 [wrapper] cleanup supervisor_pilot 1548879 1365488
[2025-07-26 15:12:49] 2025-07-26 19:12:49,177 [wrapper] Test setup, not cleaning
[2025-07-26 15:12:49] 2025-07-26 19:12:49,182 [wrapper] apfmon messages muted
[2025-07-26 15:12:49] 2025-07-26 19:12:49,186 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:12:49] 2025-07-26 19:12:49,191 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:12:49]  *** Error codes and diagnostics ***
[2025-07-26 15:12:49]     "exeErrorCode": 0,
[2025-07-26 15:12:49]     "exeErrorDiag": "",
[2025-07-26 15:12:49]     "pilotErrorCode": 0,
[2025-07-26 15:12:49]     "pilotErrorDiag": "",
[2025-07-26 15:12:49]  *** Listing of results directory ***
[2025-07-26 15:12:49] total 347940
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 05:57 pilot3.tar.gz
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:15 queuedata.json
[2025-07-26 15:12:49] -rwx------. 1 boincer umatlas     36292 Jul 26 06:16 runpilot2-wrapper.sh
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas       100 Jul 26 13:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:12:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 13:33 run_atlas
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas       105 Jul 26 13:33 job.xml
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas 146827393 Jul 26 13:33 EVNT.45743347._002062.pool.root.1
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:33 start_atlas.sh
[2025-07-26 15:12:49] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 13:33 shared
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 13:33 input.tar.gz
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas         0 Jul 26 13:33 boinc_lockfile
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 13:33 pandaJob.out
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas    980125 Jul 26 13:33 agis_schedconf.cvmfs.json
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas   1593052 Jul 26 13:33 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:12:49] drwx------. 4 boincer umatlas      4096 Jul 26 13:33 pilot3
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas 203840280 Jul 26 15:11 HITS.45743349._036181.pool.root.1
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas       529 Jul 26 15:11 boinc_task_state.xml
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas      1038 Jul 26 15:12 memory_monitor_summary.json
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas    370770 Jul 26 15:12 log.45743349._036181.job.log.tgz.1
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas      6843 Jul 26 15:12 init_data.xml
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas        95 Jul 26 15:12 pilot_heartbeat.json
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas      7825 Jul 26 15:12 heartbeat.json
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas        27 Jul 26 15:12 wrapper_checkpoint.txt
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 15:12 boinc_mmap_file
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas       823 Jul 26 15:12 pilotlog.txt
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas    504694 Jul 26 15:12 log.45743349._036181.job.log.1
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas       357 Jul 26 15:12 output.list
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas       620 Jul 26 15:12 runtime_log
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas    890880 Jul 26 15:12 result.tar.gz
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas       654 Jul 26 15:12 U1IODmq7qz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOpRLDmgVlFRn.diag
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 15:12 runtime_log.err
[2025-07-26 15:12:49] -rw-r--r--. 1 boincer umatlas     22052 Jul 26 15:12 stderr.txt
[2025-07-26 15:12:49] HITS file was successfully produced:
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas 203840280 Jul 26 15:11 shared/HITS.pool.root.1
[2025-07-26 15:12:49]  *** Contents of shared directory: ***
[2025-07-26 15:12:49] total 343876
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas 146827393 Jul 26 13:33 ATLAS.root_0
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 13:33 start_atlas.sh
[2025-07-26 15:12:49] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 13:33 input.tar.gz
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas 203840280 Jul 26 15:11 HITS.pool.root.1
[2025-07-26 15:12:49] -rw-------. 1 boincer umatlas    890880 Jul 26 15:12 result.tar.gz
15:13:11 (1361379): run_atlas exited; CPU time 46768.564780
15:13:11 (1361379): called boinc_finish(0)

</stderr_txt>
]]>

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