Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 23:18:07 (3584): Detected: vboxwrapper 26206
2025-07-26 23:18:07 (3584): Detected: BOINC client v8.0.2
2025-07-26 23:18:07 (3584): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-26 23:18:08 (3584): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 23:18:08 (3584): Create VM. (boinc_3a1045b20a17da5e, slot#1)
2025-07-26 23:18:09 (3584): Setting Memory Size for VM. (4600MB)
2025-07-26 23:18:09 (3584): Setting CPU Count for VM. (6)
2025-07-26 23:18:09 (3584): Setting Chipset Options for VM.
2025-07-26 23:18:10 (3584): Setting Graphics Controller Options for VM.
2025-07-26 23:18:10 (3584): Setting Boot Options for VM.
2025-07-26 23:18:10 (3584): Setting Network Configuration for NAT.
2025-07-26 23:18:10 (3584): Enabling VM Network Access.
2025-07-26 23:18:11 (3584): Disabling USB Support for VM.
2025-07-26 23:18:11 (3584): Disabling COM Port Support for VM.
2025-07-26 23:18:11 (3584): Disabling LPT Port Support for VM.
2025-07-26 23:18:11 (3584): Disabling Audio Support for VM.
2025-07-26 23:18:12 (3584): Disabling Clipboard Support for VM.
2025-07-26 23:18:12 (3584): Disabling Drag and Drop Support for VM.
2025-07-26 23:18:12 (3584): Adding storage controller(s) to VM.
2025-07-26 23:18:13 (3584): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 23:18:15 (3584): Adding VirtualBox Guest Additions to VM.
2025-07-26 23:18:16 (3584): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 23:18:16 (3584): forwarding host port 63501 to guest port 80
2025-07-26 23:18:16 (3584): Enabling remote desktop for VM.
2025-07-26 23:18:16 (3584): Required extension pack not installed, remote desktop not enabled.
2025-07-26 23:18:16 (3584): Enabling shared directory for VM.
2025-07-26 23:18:17 (3584): Starting VM using VBoxManage interface. (boinc_3a1045b20a17da5e, slot#1)
2025-07-26 23:18:21 (3584): Successfully started VM. (PID = '24476')
2025-07-26 23:18:21 (3584): Reporting VM Process ID to BOINC.
2025-07-26 23:18:21 (3584): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-26 23:18:21 (3584): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 23:18:21 (3584): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 23:18:21 (3584): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 23:18:21 (3584): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 23:18:21 (3584): Detected: Web Application Enabled (http://localhost:63501)
2025-07-26 23:18:22 (3584): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:18:29 (3584): Preference change detected
2025-07-26 23:18:29 (3584): Setting CPU throttle for VM. (50%)
2025-07-26 23:18:29 (3584): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 23:18:29 (3584): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:18:30 (3584): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 23:18:30 (3584): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 23:18:33 (3584): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 23:18:33 (3584): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 23:18:33 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 23:18:38 (3584): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 23:18:38 (3584): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 23:18:42 (3584): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000098 main     Log opened 2025-07-26T23:18:34.436294000Z
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000164 main     OS Product: Linux
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000186 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000203 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000220 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000220 main     Process ID: 1334
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000220 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 23:18:42 (3584): Guest Log: 00:00:00.000609 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 23:18:43 (3584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 23:18:43 (3584): Guest Log: [INFO] Mounting shared directory
2025-07-26 23:18:43 (3584): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 23:18:45 (3584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 23:18:45 (3584): Guest Log: [INFO] Detected branch: prod
2025-07-26 23:18:45 (3584): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 23:18:45 (3584): Guest Log: Copying input files
2025-07-26 23:18:45 (3584): Guest Log: Copied input files into RunAtlas.
2025-07-26 23:18:45 (3584): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 23:18:45 (3584): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 23:18:45 (3584): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 23:18:45 (3584): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 23:18:52 (3584): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 23:18:52 (3584): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 23:18:52 (3584): Guest Log: 2.6.3.0 1612 0 30012 148799 4 1 3117619 4096000 0 65024 0 0 n/a 1 4 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 23:18:52 (3584): Guest Log: 00:00:10.002075 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 418 444 232 000ns (GuestNow=1 753 586 332 882 239 000 ns GuestLast=1 753 571 914 438 007 000 ns fSetTimeLastLoop=true )
2025-07-26 23:18:55 (3584): Guest Log: copied the webapp to /var/www
2025-07-26 23:18:55 (3584): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-26 23:18:55 (3584): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-26 23:18:56 (3584): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 23:18:56 (3584): Guest Log:  *** Starting ATLAS job. (PandaID=6745132963 taskID=45743349) ***
2025-07-27 00:58:32 (3584): Status Report: Elapsed Time: '6000.000000'
2025-07-27 00:58:32 (3584): Status Report: CPU Time: '20341.390625'
2025-07-27 02:15:43 (3584): Guest Log:  *** Job finished ***
2025-07-27 02:15:43 (3584): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:29,592 | INFO     | all workflow threads have been joined
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:29,592 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:29,592 | INFO     | traces error code: 0
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:29,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,464 | INFO     | PID=5945 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,465 | INFO     | found 0 job(s) in 20 queues
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,465 | INFO     | [monitor] control thread has ended
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,532 [wrapper] ==== pilot stdout END ====
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,535 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,537 [wrapper] pilotpid: 5945
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,540 [wrapper] Pilot exit status: 0
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,613 [wrapper] pandaids: 6745132963
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,629 [wrapper] cleanup supervisor_pilot  8290 5946
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,631 [wrapper] Test setup, not cleaning
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,634 [wrapper] apfmon messages muted
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,636 [wrapper] ==== wrapper stdout END ====
2025-07-27 02:15:43 (3584): Guest Log: 2025-07-27 06:15:42,638 [wrapper] ==== wrapper stderr END ====
2025-07-27 02:15:43 (3584): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 02:15:43 (3584): Guest Log:     "exeErrorCode": 0,
2025-07-27 02:15:43 (3584): Guest Log:     "exeErrorDiag": "",
2025-07-27 02:15:43 (3584): Guest Log:     "pilotErrorCode": 0,
2025-07-27 02:15:43 (3584): Guest Log:     "pilotErrorDiag": "",
2025-07-27 02:15:43 (3584): Guest Log:  *** Listing of results directory ***
2025-07-27 02:15:43 (3584): Guest Log: total 218180
2025-07-27 02:15:43 (3584): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 09:57 pilot3.tar.gz
2025-07-27 02:15:43 (3584): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 10:15 queuedata.json
2025-07-27 02:15:43 (3584): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 10:16 runpilot2-wrapper.sh
2025-07-27 02:15:43 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 03:18 start_atlas.sh
2025-07-27 02:15:43 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas    542899 Jul 27 03:18 input.tar.gz
2025-07-27 02:15:43 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas      9111 Jul 27 03:18 init_data.xml
2025-07-27 02:15:43 (3584): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 03:18 EVNT.45743347._002067.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 02:15:43 (3584): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 27 03:18 pandaJob.out
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 27 03:19 agis_schedconf.cvmfs.json
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 03:19 agis_ddmendpoints.agis.ALL.json
2025-07-27 02:15:43 (3584): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 03:19 pilot3
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas 217434058 Jul 27 06:14 HITS.45743349._036259.pool.root.1
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 27 06:14 memory_monitor_summary.json
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas    308745 Jul 27 06:14 log.45743349._036259.job.log.tgz.1
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas      7825 Jul 27 06:15 heartbeat.json
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 06:15 pilot_heartbeat.json
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas       744 Jul 27 06:15 pilotlog.txt
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas    780653 Jul 27 06:15 log.45743349._036259.job.log.1
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 06:15 output.list
2025-07-27 02:15:43 (3584): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 06:15 runtime_log
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas   1105920 Jul 27 06:15 result.tar.gz
2025-07-27 02:15:43 (3584): Guest Log: -rw-r--r--. 1 atlas atlas      8603 Jul 27 06:15 runtime_log.err
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas       660 Jul 27 06:15 K8tMDmw7qz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmc0KDmSE6yAn.diag
2025-07-27 02:15:43 (3584): Guest Log: Looking for outputfile HITS.45743349._036259.pool.root.1
2025-07-27 02:15:43 (3584): Guest Log: HITS file was successfully produced
2025-07-27 02:15:43 (3584): Guest Log: -rw-------. 1 atlas atlas 217434058 Jul 27 06:14 /home/atlas/RunAtlas/HITS.45743349._036259.pool.root.1
2025-07-27 02:15:45 (3584): Guest Log: Successfully finished the ATLAS job!
2025-07-27 02:15:45 (3584): Guest Log: Copying the results back to the shared directory!
2025-07-27 02:15:45 (3584): Guest Log:  *** Contents of shared directory: ***
2025-07-27 02:15:45 (3584): Guest Log: total 349752
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root 139026446 Jul 27 03:18 ATLAS.root_0
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root 217434058 Jul 27 06:15 HITS.pool.root.1
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root      9111 Jul 27 03:18 init_data.xml
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root    542899 Jul 26 16:05 input.tar.gz
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root   1105920 Jul 27  2025 result.tar.gz
2025-07-27 02:15:45 (3584): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 16:05 start_atlas.sh
2025-07-27 02:15:45 (3584): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 02:15:45 (3584): VM Completion File Detected.
2025-07-27 02:15:45 (3584): Powering off VM.
2025-07-27 02:15:45 (3584): Successfully stopped VM.
2025-07-27 02:15:45 (3584): Deregistering VM. (boinc_3a1045b20a17da5e, slot#1)
2025-07-27 02:15:45 (3584): Removing network bandwidth throttle group from VM.
2025-07-27 02:15:45 (3584): Removing VM from VirtualBox.
02:15:50 (3584): called boinc_finish(0)

</stderr_txt>
]]>

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