Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:29:37 (2845540): wrapper (7.7.26015): starting
05:29:37 (2845540): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 05:29:37] Arguments: --nthreads 3
[2025-07-27 05:29:37] Threads: 3
[2025-07-27 05:29:37] Checking for CVMFS
[2025-07-27 05:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:29:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:29:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:29:38] 2.9.2.0 1844510 3598 86432 148799 1 57 30942800 36864000 0 130560 0 2674354 99.990 130227 3953 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 05:29:38] CVMFS is ok
[2025-07-27 05:29:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:29:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:29:38] Further information can be found at the LHC@home message board.
[2025-07-27 05:29:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:29:38] Checking for apptainer binary...
[2025-07-27 05:29:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:29:38] Running /usr/bin/apptainer --version
[2025-07-27 05:29:38] apptainer version 1.3.6-6.1
[2025-07-27 05:29:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:29:38] atlasA214
[2025-07-27 05:29:38] apptainer works
[2025-07-27 05:29:38] Set ATHENA_PROC_NUMBER=3
[2025-07-27 05:29:38] Set ATHENA_CORE_NUMBER=3
[2025-07-27 05:29:38] Starting ATLAS job with PandaID=6745097878
[2025-07-27 05:29:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 07:05:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 07:05:26]  is_tar=False
[2025-07-27 07:05:26]  lfn=log.45743349._033080.job.log.tgz.1
[2025-07-27 07:05:26]  mtime=0
[2025-07-27 07:05:26]  protocol_id=None
[2025-07-27 07:05:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 07:05:26]  replicas=None
[2025-07-27 07:05:26]  scope=mc23_13p6TeV
[2025-07-27 07:05:26]  status=None
[2025-07-27 07:05:26]  status_code=0
[2025-07-27 07:05:26]  storage_token=
[2025-07-27 07:05:26]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745097878/log.45743349._033080.job.log.tgz.1
[2025-07-27 07:05:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/8b/log.45743349._033080.job.log.tgz.1
[2025-07-27 07:05:26]  workdir=None
[2025-07-27 07:05:26] ]
[2025-07-27 07:05:26] 2025-07-27 05:04:48,326 | INFO     | transferring file log.45743349._033080.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745097878/log.45743349._033080.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 07:05:26] 2025-07-27 05:04:48,326 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745097878/log.45743349._033080.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0330
[2025-07-27 07:05:26] 2025-07-27 05:04:48,339 | INFO     | adding to output.list: log.45743349._033080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/8b/log.45743349._033080.job.log.tg
[2025-07-27 07:05:26] 2025-07-27 05:04:48,339 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 07:05:26] 2025-07-27 05:04:48,339 | INFO     | summary of transferred files:
[2025-07-27 07:05:26] 2025-07-27 05:04:48,339 | INFO     |  -- lfn=log.45743349._033080.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 07:05:26] 2025-07-27 05:04:48,339 | INFO     | stage-out finished correctly
[2025-07-27 07:05:26] 2025-07-27 05:04:50,543 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 07:05:26] 2025-07-27 05:04:50,649 | WARNING  | process 2855680 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 07:05:26] 2025-07-27 05:04:50,649 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745097878/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:05:26] 2025-07-27 05:04:50,684 | INFO     | number of running child processes to parent process 2855680: 1
[2025-07-27 07:05:26] 2025-07-27 05:04:50,684 | INFO     | maximum number of monitored processes: 6
[2025-07-27 07:05:26] 2025-07-27 05:04:52,926 | INFO     | job 6745097878 has state=finished
[2025-07-27 07:05:26] 2025-07-27 05:04:52,926 | INFO     | preparing for final server update for job 6745097878 in state='finished'
[2025-07-27 07:05:26] 2025-07-27 05:04:52,927 | INFO     | this job has now completed (state=finished)
[2025-07-27 07:05:26] 2025-07-27 05:04:52,927 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 07:05:26] 2025-07-27 05:04:52,927 | INFO     | log transfer has been attempted: DONE
[2025-07-27 07:05:26] 2025-07-27 05:04:52,927 | INFO     | job 6745097878 has finished - writing final server update
[2025-07-27 07:05:26] 2025-07-27 05:04:52,927 | INFO     | total number of processed events: 400 (read)
[2025-07-27 07:05:26] 2025-07-27 05:04:52,928 | INFO     | executing command: lscpu
[2025-07-27 07:05:26] 2025-07-27 05:04:52,943 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 07:05:26] 2025-07-27 05:04:53,188 | INFO     | monitor loop #439: job 0:6745097878 is in state 'finished'
[2025-07-27 07:05:26] 2025-07-27 05:04:53,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,174 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 07:05:26] 2025-07-27 05:04:55,175 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3627.081083333333
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745097878/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | INFO     | extracted standard info from prmon json
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 07:05:26] 2025-07-27 05:04:55,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | fitting pss+swap vs Time
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | sum of deviations: -15630207510.0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | mean x: 1753589931.0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | mean y: 2491001.057471264
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | -- intersect: 134252395979.21344
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | intersect: 134252395979.21344
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | chi2: 0.0879057643896768
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | -- intersect: 134252395979.21344
[2025-07-27 07:05:26] 2025-07-27 05:04:55,177 | INFO     | current memory leak: -76.56 B/s (using 87 data points, chi2=0.09)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | could have reported an average CPU frequency of 3783 MHz (7 samples)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | ..............................
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . Timing measurements:
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . get job = 0 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . initial setup = 1 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . payload setup = 3 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . stage-in = 0 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . payload execution = 5684 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . stage-out = 0 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | . log creation = 0 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,178 | INFO     | ..............................
[2025-07-27 07:05:26] 2025-07-27 05:04:55,209 | INFO     | 
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | job summary report
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | --------------------------------------------------
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | PanDA job id: 6745097878
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | task id: 45743349
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | errors: (none)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | pilot state: finished 
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | transexitcode: 0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | exeerrorcode: 0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | exeerrordiag: 
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | exitcode: 0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | exitmsg: OK
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | cpuconsumptiontime: 16370 s
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | nevents: 400
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | neventsw: 0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | pid: 2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | pgrp: 2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | corecount: 3
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | event service: False
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | sizes: {0: 2397478, 3: 2397740, 11: 2397768, 5691: 2424613, 5692: 2433672, 5694: 2433672, 5699: 2433994}
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | --------------------------------------------------
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | 
[2025-07-27 07:05:26] 2025-07-27 05:04:55,210 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 07:05:26] 2025-07-27 05:04:55,221 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,221 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,221 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,221 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | job 6745097878 has completed (purged errors)
[2025-07-27 07:05:26] 2025-07-27 05:04:55,222 | INFO     | overall cleanup function is called
[2025-07-27 07:05:26] 2025-07-27 05:04:56,228 | INFO     | --- collectZombieJob: --- 10, [2855680]
[2025-07-27 07:05:26] 2025-07-27 05:04:56,229 | INFO     | zombie collector waiting for pid 2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:56,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 07:05:26] 2025-07-27 05:04:56,229 | INFO     | collected zombie processes
[2025-07-27 07:05:26] 2025-07-27 05:04:56,229 | INFO     | will attempt to kill all subprocesses of pid=2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:56,269 | INFO     | process IDs to be killed: [2855680] (in reverse order)
[2025-07-27 07:05:26] 2025-07-27 05:04:56,292 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 07:05:26] 2025-07-27 05:04:56,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 07:05:26] 2025-07-27 05:04:56,294 | INFO     | did not find any defunct processes belonging to 2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:56,295 | INFO     | did not find any defunct processes belonging to 2855680
[2025-07-27 07:05:26] 2025-07-27 05:04:56,295 | INFO     | ready for new job
[2025-07-27 07:05:26] 2025-07-27 05:04:56,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | ***************************************
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | ***************************************
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | 
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | architecture information:
[2025-07-27 07:05:26] 2025-07-27 05:04:56,296 | INFO     | executing command: cat /etc/os-release
[2025-07-27 07:05:26] 2025-07-27 05:04:56,305 | INFO     | cat /etc/os-release:
[2025-07-27 07:05:26] NAME="CentOS Linux"
[2025-07-27 07:05:26] VERSION="7 (Core)"
[2025-07-27 07:05:26] ID="centos"
[2025-07-27 07:05:26] ID_LIKE="rhel fedora"
[2025-07-27 07:05:26] VERSION_ID="7"
[2025-07-27 07:05:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 07:05:26] ANSI_COLOR="0;31"
[2025-07-27 07:05:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 07:05:26] HOME_URL="https://www.centos.org/"
[2025-07-27 07:05:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 07:05:26] 
[2025-07-27 07:05:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 07:05:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 07:05:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 07:05:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 07:05:26] 
[2025-07-27 07:05:26] 2025-07-27 05:04:56,305 | INFO     | ***************************************
[2025-07-27 07:05:26] 2025-07-27 05:04:56,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | INFO     | sufficient remaining disk space (224587153408 B)
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | INFO     | update_server=False
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 07:05:26] 2025-07-27 05:04:56,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:05:26] 2025-07-27 05:04:56,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:05:26] 2025-07-27 05:04:56,823 | INFO     | aborting loop
[2025-07-27 07:05:26] 2025-07-27 05:04:56,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 07:05:26] 2025-07-27 05:04:56,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 07:05:26] 2025-07-27 05:04:56,965 | INFO     | all data control threads have been joined
[2025-07-27 07:05:26] 2025-07-27 05:04:57,067 | INFO     | all job control threads have been joined
[2025-07-27 07:05:26] 2025-07-27 05:04:57,828 | INFO     | [job] job monitor thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:57,828 | INFO     | [job] queue monitor thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:57,829 | INFO     | [job] retrieve thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:57,971 | INFO     | [data] control thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,073 | INFO     | [job] control thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,278 | INFO     | [data] copytool_in thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,286 | INFO     | all payload control threads have been joined
[2025-07-27 07:05:26] 2025-07-27 05:04:58,329 | INFO     | [payload] validate_post thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,795 | INFO     | [job] validate thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,829 | INFO     | [data] copytool_out thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,878 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,878 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:58,938 | INFO     | [payload] failed_post thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:59,203 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:04:59,292 | INFO     | [payload] control thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:05:00,830 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:05:07,269 | INFO     | job.realtimelogging is not enabled
[2025-07-27 07:05:26] 2025-07-27 05:05:08,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 07:05:26] 2025-07-27 05:05:09,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260969699136)>', '<ExcThread(monitor, started 140260327544576)>']
[2025-07-27 07:05:26] 2025-07-27 05:05:14,230 | INFO     | all workflow threads have been joined
[2025-07-27 07:05:26] 2025-07-27 05:05:14,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 07:05:26] 2025-07-27 05:05:14,231 | INFO     | traces error code: 0
[2025-07-27 07:05:26] 2025-07-27 05:05:14,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | INFO     | PID=2849181 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 07:05:26] 2025-07-27 05:05:26,792 | INFO     | [monitor] control thread has ended
[2025-07-27 07:05:26] 2025-07-27 05:05:26,840 [wrapper] ==== pilot stdout END ====
[2025-07-27 07:05:26] 2025-07-27 05:05:26,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 07:05:26] 2025-07-27 05:05:26,845 [wrapper] pilotpid: 2849181
[2025-07-27 07:05:26] 2025-07-27 05:05:26,847 [wrapper] Pilot exit status: 0
[2025-07-27 07:05:26] 2025-07-27 05:05:26,854 [wrapper] pandaids: 6745097878
[2025-07-27 07:05:26] 2025-07-27 05:05:26,869 [wrapper] cleanup supervisor_pilot 2867553 2849182
[2025-07-27 07:05:26] 2025-07-27 05:05:26,871 [wrapper] Test setup, not cleaning
[2025-07-27 07:05:26] 2025-07-27 05:05:26,874 [wrapper] apfmon messages muted
[2025-07-27 07:05:26] 2025-07-27 05:05:26,876 [wrapper] ==== wrapper stdout END ====
[2025-07-27 07:05:26] 2025-07-27 05:05:26,878 [wrapper] ==== wrapper stderr END ====
[2025-07-27 07:05:26]  *** Error codes and diagnostics ***
[2025-07-27 07:05:26]     "exeErrorCode": 0,
[2025-07-27 07:05:26]     "exeErrorDiag": "",
[2025-07-27 07:05:26]     "pilotErrorCode": 0,
[2025-07-27 07:05:26]     "pilotErrorDiag": "",
[2025-07-27 07:05:26]  *** Listing of results directory ***
[2025-07-27 07:05:26] total 351512
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc    530466 Jul 26 07:25 pilot3.tar.gz
[2025-07-27 07:05:26] -rwx------ 1 boinc boinc     36292 Jul 26 07:51 runpilot2-wrapper.sh
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc      5112 Jul 26 07:51 queuedata.json
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc       100 Jul 27 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 07:05:26] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 05:29 run_atlas
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc       105 Jul 27 05:29 job.xml
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc 145670389 Jul 27 05:29 EVNT.45743347._001867.pool.root.1
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc      6924 Jul 27 05:29 init_data.xml
[2025-07-27 07:05:26] drwxrwx--x 2 boinc boinc      4096 Jul 27 05:29 shared
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc    542894 Jul 27 05:29 input.tar.gz
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc     15095 Jul 27 05:29 start_atlas.sh
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc         0 Jul 27 05:29 boinc_lockfile
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc      2563 Jul 27 05:29 pandaJob.out
[2025-07-27 07:05:26] -rw------- 1 boinc boinc    980125 Jul 27 05:29 agis_schedconf.cvmfs.json
[2025-07-27 07:05:26] -rw------- 1 boinc boinc   1593052 Jul 27 05:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 07:05:26] drwx------ 4 boinc boinc      4096 Jul 27 05:29 pilot3
[2025-07-27 07:05:26] -rw------- 1 boinc boinc 208819423 Jul 27 07:04 HITS.45743349._033080.pool.root.1
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc       529 Jul 27 07:04 boinc_task_state.xml
[2025-07-27 07:05:26] -rw------- 1 boinc boinc      1021 Jul 27 07:04 memory_monitor_summary.json
[2025-07-27 07:05:26] -rw------- 1 boinc boinc    234003 Jul 27 07:04 log.45743349._033080.job.log.tgz.1
[2025-07-27 07:05:26] -rw------- 1 boinc boinc      7770 Jul 27 07:04 heartbeat.json
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc        27 Jul 27 07:05 wrapper_checkpoint.txt
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc      8192 Jul 27 07:05 boinc_mmap_file
[2025-07-27 07:05:26] -rw------- 1 boinc boinc        95 Jul 27 07:05 pilot_heartbeat.json
[2025-07-27 07:05:26] -rw------- 1 boinc boinc       747 Jul 27 07:05 pilotlog.txt
[2025-07-27 07:05:26] -rw------- 1 boinc boinc    550519 Jul 27 07:05 log.45743349._033080.job.log.1
[2025-07-27 07:05:26] -rw------- 1 boinc boinc       357 Jul 27 07:05 output.list
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc       620 Jul 27 07:05 runtime_log
[2025-07-27 07:05:26] -rw------- 1 boinc boinc    808960 Jul 27 07:05 result.tar.gz
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc      8749 Jul 27 07:05 runtime_log.err
[2025-07-27 07:05:26] -rw------- 1 boinc boinc       662 Jul 27 07:05 2LcKDmB0mz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZD0KDmhSmC3n.diag
[2025-07-27 07:05:26] -rw-r--r-- 1 boinc boinc     21583 Jul 27 07:05 stderr.txt
[2025-07-27 07:05:26] HITS file was successfully produced:
[2025-07-27 07:05:26] -rw------- 1 boinc boinc 208819423 Jul 27 07:04 shared/HITS.pool.root.1
[2025-07-27 07:05:26]  *** Contents of shared directory: ***
[2025-07-27 07:05:26] total 347536
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc 145670389 Jul 27 05:29 ATLAS.root_0
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc    542894 Jul 27 05:29 input.tar.gz
[2025-07-27 07:05:26] -rw-r--r-- 2 boinc boinc     15095 Jul 27 05:29 start_atlas.sh
[2025-07-27 07:05:26] -rw------- 1 boinc boinc 208819423 Jul 27 07:04 HITS.pool.root.1
[2025-07-27 07:05:26] -rw------- 1 boinc boinc    808960 Jul 27 07:05 result.tar.gz
07:05:28 (2845540): run_atlas exited; CPU time 16387.856192
07:05:28 (2845540): called boinc_finish(0)

</stderr_txt>
]]>

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