Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:26:55 (13632): wrapper (7.7.26015): starting
11:26:55 (13632): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 11:26:55] Arguments: --nthreads 8
[2025-07-26 11:26:55] Threads: 8
[2025-07-26 11:26:55] Checking for CVMFS
[2025-07-26 11:26:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 11:26:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 11:26:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 11:26:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 11:26:55] 2.11.2.0 2876 93704 77052 148782 2 56 19950451 20275200 1 130560 0 24677502 99.958 7138439 8047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 11:26:55] CVMFS is ok
[2025-07-26 11:26:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 11:26:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 11:26:55] Further information can be found at the LHC@home message board.
[2025-07-26 11:26:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 11:26:55] Checking for apptainer binary...
[2025-07-26 11:26:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 11:26:55] Running /usr/bin/apptainer --version
[2025-07-26 11:26:55] apptainer version 1.3.2-1.el7
[2025-07-26 11:26:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 11:26:57] c-204-5.aglt2.org
[2025-07-26 11:26:57] apptainer works
[2025-07-26 11:26:57] Set ATHENA_PROC_NUMBER=8
[2025-07-26 11:26:57] Set ATHENA_CORE_NUMBER=8
[2025-07-26 11:26:57] Starting ATLAS job with PandaID=6745133012
[2025-07-26 11:26:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:47:24]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:47:24] 2025-07-26 17:46:52,018 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:47:24] 2025-07-26 17:46:52,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:47:24] 2025-07-26 17:46:52,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:47:24] 2025-07-26 17:46:52,019 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:47:24] 2025-07-26 17:46:52,023 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:47:24] 2025-07-26 17:46:52,023 | INFO     | sum of square deviations: 797291228.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,024 | INFO     | sum of deviations: -9338108750.000004
[2025-07-26 13:47:24] 2025-07-26 17:46:52,024 | INFO     | mean x: 1753547813.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,024 | INFO     | mean y: 2558667.00729927
[2025-07-26 13:47:24] 2025-07-26 17:46:52,025 | INFO     | -- intersect: 20540625061.133823
[2025-07-26 13:47:24] 2025-07-26 17:46:52,025 | INFO     | intersect: 20540625061.133823
[2025-07-26 13:47:24] 2025-07-26 17:46:52,025 | INFO     | sufficient remaining disk space (18740150272 B)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,026 | INFO     | chi2: 1.6146269258919492
[2025-07-26 13:47:24] 2025-07-26 17:46:52,026 | INFO     | sum of square deviations: 713140813.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,027 | INFO     | sum of deviations: -8422797589.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,027 | INFO     | mean x: 1753547660.5
[2025-07-26 13:47:24] 2025-07-26 17:46:52,027 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,027 | INFO     | mean y: 2560326.5
[2025-07-26 13:47:24] 2025-07-26 17:46:52,028 | INFO     | -- intersect: 20713444821.980404
[2025-07-26 13:47:24] 2025-07-26 17:46:52,028 | INFO     | intersect: 20713444821.980404
[2025-07-26 13:47:24] 2025-07-26 17:46:52,028 | INFO     | chi2: 1.614317239698587
[2025-07-26 13:47:24] 2025-07-26 17:46:52,028 | INFO     | current chi2=1.614317239698587 (change=0.019180046386949114 %)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,028 | INFO     | right removable region: 131
[2025-07-26 13:47:24] 2025-07-26 17:46:52,029 | INFO     | sum of square deviations: 713140813.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,030 | INFO     | sum of deviations: -30279792348.499996
[2025-07-26 13:47:24] 2025-07-26 17:46:52,030 | INFO     | mean x: 1753547965.5
[2025-07-26 13:47:24] 2025-07-26 17:46:52,030 | INFO     | mean y: 2595995.643939394
[2025-07-26 13:47:24] 2025-07-26 17:46:52,030 | INFO     | -- intersect: 74457833026.75554
[2025-07-26 13:47:24] 2025-07-26 17:46:52,030 | INFO     | intersect: 74457833026.75554
[2025-07-26 13:47:24] 2025-07-26 17:46:52,031 | INFO     | chi2: 0.1273805552919221
[2025-07-26 13:47:24] 2025-07-26 17:46:52,031 | INFO     | current chi2=0.1273805552919221 (change=92.11083667383072 %)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,031 | INFO     | sum of square deviations: 635130048.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,032 | INFO     | sum of deviations: -27719610057.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,032 | INFO     | mean x: 1753548118.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,032 | INFO     | mean y: 2590972.653543307
[2025-07-26 13:47:24] 2025-07-26 17:46:52,032 | INFO     | -- intersect: 76534429137.46704
[2025-07-26 13:47:24] 2025-07-26 17:46:52,033 | INFO     | intersect: 76534429137.46704
[2025-07-26 13:47:24] 2025-07-26 17:46:52,033 | INFO     | chi2: 0.12609522629855066
[2025-07-26 13:47:24] 2025-07-26 17:46:52,033 | INFO     | current chi2=0.12609522629855066 (change=1.0090464674343844 %)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,033 | INFO     | left removable region: 20
[2025-07-26 13:47:24] 2025-07-26 17:46:52,034 | INFO     | sum of square deviations: 424045160.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,034 | INFO     | sum of deviations: -19679291435.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,034 | INFO     | mean x: 1753548240.0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,035 | INFO     | mean y: 2579389.396396396
[2025-07-26 13:47:24] 2025-07-26 17:46:52,035 | INFO     | -- intersect: 81382088261.26118
[2025-07-26 13:47:24] 2025-07-26 17:46:52,035 | INFO     | intersect: 81382088261.26118
[2025-07-26 13:47:24] 2025-07-26 17:46:52,035 | INFO     | chi2: 0.11762863887722566
[2025-07-26 13:47:24] 2025-07-26 17:46:52,035 | INFO     | -- intersect: 81382088261.26118
[2025-07-26 13:47:24] 2025-07-26 17:46:52,036 | INFO     | current memory leak: -46.41 B/s (using 111 data points, chi2=0.12)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,036 | INFO     | could have reported an average CPU frequency of 1983 MHz (8 samples)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,036 | INFO     | ..............................
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . Timing measurements:
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . get job = 0 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . initial setup = 2 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . payload setup = 10 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . stage-in = 0 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . payload execution = 8338 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,037 | INFO     | . stage-out = 1 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,038 | INFO     | . log creation = 0 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,038 | INFO     | ..............................
[2025-07-26 13:47:24] 2025-07-26 17:46:52,106 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745133012: 3664224 B (within 2537553920 B limit)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,118 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745133012/HITS.45743349._036308.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,123 | INFO     | total size of present files: 0 B (workdir size: 3664224 B)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,124 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745133012/HITS.45743349._036308.pool.root.1 since it does not exist
[2025-07-26 13:47:24] 2025-07-26 17:46:52,235 | INFO     | number of running child processes to parent process 23766: 1
[2025-07-26 13:47:24] 2025-07-26 17:46:52,235 | INFO     | maximum number of monitored processes: 6
[2025-07-26 13:47:24] 2025-07-26 17:46:52,235 | INFO     | aborting job monitoring since job object (job id=6745133012) has expired
[2025-07-26 13:47:24] 2025-07-26 17:46:52,329 | INFO     | 
[2025-07-26 13:47:24] 2025-07-26 17:46:52,329 | INFO     | job summary report
[2025-07-26 13:47:24] 2025-07-26 17:46:52,330 | INFO     | --------------------------------------------------
[2025-07-26 13:47:24] 2025-07-26 17:46:52,330 | INFO     | PanDA job id: 6745133012
[2025-07-26 13:47:24] 2025-07-26 17:46:52,330 | INFO     | task id: 45743349
[2025-07-26 13:47:24] 2025-07-26 17:46:52,330 | INFO     | errors: (none)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | pilot state: finished 
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | transexitcode: 0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | exeerrorcode: 0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | exeerrordiag: 
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | exitcode: 0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,331 | INFO     | exitmsg: OK
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | cpuconsumptiontime: 63121 s
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | nevents: 400
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | neventsw: 0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | pid: 23766
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | pgrp: 23766
[2025-07-26 13:47:24] 2025-07-26 17:46:52,332 | INFO     | corecount: 8
[2025-07-26 13:47:24] 2025-07-26 17:46:52,333 | INFO     | event service: False
[2025-07-26 13:47:24] 2025-07-26 17:46:52,333 | INFO     | sizes: {0: 2396647, 1: 2397503, 6: 2397765, 12: 2397793, 8352: 2425592, 8353: 2425591, 8354: 2434773, 8357: 2434829, 8363: 2435051}
[2025-07-26 13:47:24] 2025-07-26 17:46:52,333 | INFO     | --------------------------------------------------
[2025-07-26 13:47:24] 2025-07-26 17:46:52,333 | INFO     | 
[2025-07-26 13:47:24] 2025-07-26 17:46:52,333 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 13:47:24] 2025-07-26 17:46:52,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,358 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,358 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,358 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:47:24] 2025-07-26 17:46:52,362 | INFO     | job 6745133012 has completed (purged errors)
[2025-07-26 13:47:24] 2025-07-26 17:46:52,362 | INFO     | overall cleanup function is called
[2025-07-26 13:47:24] 2025-07-26 17:46:53,370 | INFO     | --- collectZombieJob: --- 10, [23766]
[2025-07-26 13:47:24] 2025-07-26 17:46:53,370 | INFO     | zombie collector waiting for pid 23766
[2025-07-26 13:47:24] 2025-07-26 17:46:53,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:47:24] 2025-07-26 17:46:53,370 | INFO     | collected zombie processes
[2025-07-26 13:47:24] 2025-07-26 17:46:53,371 | INFO     | will attempt to kill all subprocesses of pid=23766
[2025-07-26 13:47:24] 2025-07-26 17:46:53,462 | INFO     | process IDs to be killed: [23766] (in reverse order)
[2025-07-26 13:47:24] 2025-07-26 17:46:53,518 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:47:24] 2025-07-26 17:46:53,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:47:24] 2025-07-26 17:46:53,523 | INFO     | did not find any defunct processes belonging to 23766
[2025-07-26 13:47:24] 2025-07-26 17:46:53,526 | INFO     | did not find any defunct processes belonging to 23766
[2025-07-26 13:47:24] 2025-07-26 17:46:53,526 | INFO     | ready for new job
[2025-07-26 13:47:24] 2025-07-26 17:46:53,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:47:24] 2025-07-26 17:46:53,528 | INFO     | ***************************************
[2025-07-26 13:47:24] 2025-07-26 17:46:53,528 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:47:24] 2025-07-26 17:46:53,528 | INFO     | ***************************************
[2025-07-26 13:47:24] 2025-07-26 17:46:53,528 | INFO     | 
[2025-07-26 13:47:24] 2025-07-26 17:46:53,528 | INFO     | architecture information:
[2025-07-26 13:47:24] 2025-07-26 17:46:53,529 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:47:24] 2025-07-26 17:46:53,548 | INFO     | cat /etc/os-release:
[2025-07-26 13:47:24] NAME="CentOS Linux"
[2025-07-26 13:47:24] VERSION="7 (Core)"
[2025-07-26 13:47:24] ID="centos"
[2025-07-26 13:47:24] ID_LIKE="rhel fedora"
[2025-07-26 13:47:24] VERSION_ID="7"
[2025-07-26 13:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:47:24] ANSI_COLOR="0;31"
[2025-07-26 13:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:47:24] HOME_URL="https://www.centos.org/"
[2025-07-26 13:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:47:24] 
[2025-07-26 13:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:47:24] 
[2025-07-26 13:47:24] 2025-07-26 17:46:53,548 | INFO     | ***************************************
[2025-07-26 13:47:24] 2025-07-26 17:46:54,051 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 13:47:24] 2025-07-26 17:46:54,069 | INFO     | sufficient remaining disk space (18744344576 B)
[2025-07-26 13:47:24] 2025-07-26 17:46:54,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:47:24] 2025-07-26 17:46:54,070 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:47:24] 2025-07-26 17:46:54,070 | INFO     | update_server=False
[2025-07-26 13:47:24] 2025-07-26 17:46:54,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:47:24] 2025-07-26 17:46:54,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:47:24] 2025-07-26 17:46:54,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:47:24] 2025-07-26 17:46:54,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:47:24] 2025-07-26 17:46:54,072 | INFO     | aborting loop
[2025-07-26 13:47:24] 2025-07-26 17:46:54,658 | INFO     | all data control threads have been joined
[2025-07-26 13:47:24] 2025-07-26 17:46:54,837 | INFO     | all job control threads have been joined
[2025-07-26 13:47:24] 2025-07-26 17:46:54,973 | INFO     | all payload control threads have been joined
[2025-07-26 13:47:24] 2025-07-26 17:46:55,076 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,076 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,077 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,291 | INFO     | [job] validate thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,354 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,663 | INFO     | [data] control thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,826 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,833 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,836 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,840 | INFO     | [job] control thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,875 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,952 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:55,978 | INFO     | [payload] control thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:56,076 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:46:56,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:47:24] 2025-07-26 17:47:00,578 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:47:24] 2025-07-26 17:47:01,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114349700928)>', '<ExcThread(monitor, started 140113644353280)>']
[2025-07-26 13:47:24] 2025-07-26 17:47:06,899 | INFO     | all workflow threads have been joined
[2025-07-26 13:47:24] 2025-07-26 17:47:06,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:47:24] 2025-07-26 17:47:06,899 | INFO     | traces error code: 0
[2025-07-26 13:47:24] 2025-07-26 17:47:06,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:47:24] 2025-07-26 17:47:24,394 | INFO     | PID=17271 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 13:47:24] 2025-07-26 17:47:24,395 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:47:24] 2025-07-26 17:47:24,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:47:24] 2025-07-26 17:47:24,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:47:24] 2025-07-26 17:47:24,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:47:24] 2025-07-26 17:47:24,396 | INFO     | [monitor] control thread has ended
[2025-07-26 13:47:24] 2025-07-26 17:47:24,495 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:47:24] 2025-07-26 17:47:24,499 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:47:24] 2025-07-26 17:47:24,504 [wrapper] pilotpid: 17271
[2025-07-26 13:47:24] 2025-07-26 17:47:24,508 [wrapper] Pilot exit status: 0
[2025-07-26 13:47:24] 2025-07-26 17:47:24,526 [wrapper] pandaids: 6745133012
[2025-07-26 13:47:24] 2025-07-26 17:47:24,570 [wrapper] cleanup supervisor_pilot   333 17272
[2025-07-26 13:47:24] 2025-07-26 17:47:24,574 [wrapper] Test setup, not cleaning
[2025-07-26 13:47:24] 2025-07-26 17:47:24,579 [wrapper] apfmon messages muted
[2025-07-26 13:47:24] 2025-07-26 17:47:24,584 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:47:24] 2025-07-26 17:47:24,588 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:47:24]  *** Error codes and diagnostics ***
[2025-07-26 13:47:24]     "exeErrorCode": 0,
[2025-07-26 13:47:24]     "exeErrorDiag": "",
[2025-07-26 13:47:24]     "pilotErrorCode": 0,
[2025-07-26 13:47:24]     "pilotErrorDiag": "",
[2025-07-26 13:47:24]  *** Listing of results directory ***
[2025-07-26 13:47:24] total 349388
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 06:19 pilot3.tar.gz
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 06:22 queuedata.json
[2025-07-26 13:47:24] -rwx------ 1 boincer umatlas     36292 Jul 26 06:22 runpilot2-wrapper.sh
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas       100 Jul 26 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:47:24] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 11:26 run_atlas
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas       105 Jul 26 11:26 job.xml
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas 145554580 Jul 26 11:26 EVNT.45743347._002070.pool.root.1
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 11:26 start_atlas.sh
[2025-07-26 13:47:24] drwxrwx--x 2 boincer umatlas      4096 Jul 26 11:26 shared
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas    542891 Jul 26 11:26 input.tar.gz
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas         0 Jul 26 11:26 boinc_lockfile
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 11:26 pandaJob.out
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas    980133 Jul 26 11:27 agis_schedconf.cvmfs.json
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas   1593052 Jul 26 11:27 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:47:24] drwx------ 4 boincer umatlas      4096 Jul 26 11:27 pilot3
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas      5824 Jul 26 13:36 init_data.xml
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas 206136240 Jul 26 13:46 HITS.45743349._036308.pool.root.1
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas       529 Jul 26 13:46 boinc_task_state.xml
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas      1047 Jul 26 13:46 memory_monitor_summary.json
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas    341554 Jul 26 13:46 log.45743349._036308.job.log.tgz.1
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas      7847 Jul 26 13:46 heartbeat.json
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas        27 Jul 26 13:47 wrapper_checkpoint.txt
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 13:47 boinc_mmap_file
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas       745 Jul 26 13:47 pilotlog.txt
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas        95 Jul 26 13:47 pilot_heartbeat.json
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas    761188 Jul 26 13:47 log.45743349._036308.job.log.1
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas       357 Jul 26 13:47 output.list
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas       620 Jul 26 13:47 runtime_log
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas   1126400 Jul 26 13:47 result.tar.gz
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas      8655 Jul 26 13:47 runtime_log.err
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas       659 Jul 26 13:47 dhCMDm7Drz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqpRLDmt1gGym.diag
[2025-07-26 13:47:24] -rw-r--r-- 1 boincer umatlas     21329 Jul 26 13:47 stderr.txt
[2025-07-26 13:47:24] HITS file was successfully produced:
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas 206136240 Jul 26 13:46 shared/HITS.pool.root.1
[2025-07-26 13:47:24]  *** Contents of shared directory: ***
[2025-07-26 13:47:24] total 345104
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas 145554580 Jul 26 11:26 ATLAS.root_0
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 11:26 start_atlas.sh
[2025-07-26 13:47:24] -rw-r--r-- 2 boincer umatlas    542891 Jul 26 11:26 input.tar.gz
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas 206136240 Jul 26 13:46 HITS.pool.root.1
[2025-07-26 13:47:24] -rw------- 1 boincer umatlas   1126400 Jul 26 13:47 result.tar.gz
13:47:26 (13632): run_atlas exited; CPU time 63048.969463
13:47:26 (13632): called boinc_finish(0)

</stderr_txt>
]]>

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