Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:04:29 (2606073): wrapper (7.7.26015): starting
08:04:29 (2606073): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 08:04:29] Arguments: --nthreads 12
[2025-07-26 08:04:29] Threads: 12
[2025-07-26 08:04:29] Checking for CVMFS
[2025-07-26 08:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 08:04:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 08:04:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 08:04:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 08:04:29] 2.11.5.0 7890 35857 311404 148780 2 271 40892896 45568001 15150 130560 0 233523435 99.715 189957044 22202 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-26 08:04:29] CVMFS is ok
[2025-07-26 08:04:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 08:04:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 08:04:29] Further information can be found at the LHC@home message board.
[2025-07-26 08:04:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 08:04:29] Checking for apptainer binary...
[2025-07-26 08:04:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 08:04:29] Running /usr/bin/apptainer --version
[2025-07-26 08:04:29] apptainer version 1.4.1-1.el9
[2025-07-26 08:04:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 08:04:30] wns0052.triumf.lcg
[2025-07-26 08:04:30] apptainer works
[2025-07-26 08:04:30] Set ATHENA_PROC_NUMBER=12
[2025-07-26 08:04:30] Set ATHENA_CORE_NUMBER=12
[2025-07-26 08:04:30] Starting ATLAS job with PandaID=6745186026
[2025-07-26 08:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 08:08:19]  *** The last 200 lines of the pilot log: ***
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | WARNING  | wrong length of table data, x=[1753542322.0], y=[1355.0] (must be same and length>=4)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . Timing measurements:
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . get job = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . initial setup = 8 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload setup = 7 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-in = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload execution = 24 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-out = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . log creation = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745186026/pilotlog.txt
[2025-07-26 08:08:19] 2025-07-26 15:07:46,205 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 08:08:19] - Log from pilotlog.txt -
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | found no stored workdir sizes
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | WARNING  | wrong length of table data, x=[1753542322.0], y=[1355.0] (must be same and length>=4)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . Timing measurements:
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . get job = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . initial setup = 8 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload setup = 7 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-in = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload execution = 24 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-out = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . log creation = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745186026/pilotlog.txt
[2025-07-26 08:08:19] 2025-07-26 15:07:46,206 | WARNING  | 
[2025-07-26 08:08:19] [begin log extracts]
[2025-07-26 08:08:19] - Log from pilotlog.txt -
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | WARNING  | found no stored workdir sizes
[2025-07-26 08:08:19] 2025-07-26 15:07:46,188 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | WARNING  | wrong length of table data, x=[1753542322.0], y=[1355.0] (must be same and length>=4)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,189 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . Timing measurements:
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . get job = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . initial setup = 8 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload setup = 7 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-in = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . payload execution = 24 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . stage-out = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | . log creation = 0 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | ..............................
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 08:08:19] 2025-07-26 15:07:46,190 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745186026/pilotlog.txt
[2025-07-26 08:08:19] [end log extracts]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,206 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,207 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 08:08:19] 2025-07-26 15:07:46,286 | INFO     | 
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | job summary report
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | --------------------------------------------------
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | PanDA job id: 6745186026
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | task id: 45743349
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 08:05:34,642 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | pilot state: failed 
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | transexitcode: 65
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | exeerrorcode: 65
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | exitcode: 65
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | cpuconsumptiontime: 20 s
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | nevents: 0
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | neventsw: 0
[2025-07-26 08:08:19] 2025-07-26 15:07:46,287 | INFO     | pid: 2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | pgrp: 2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | corecount: 12
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | event service: False
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | sizes: {0: 2397472, 5: 2397734, 11: 2397790, 35: 2420965, 36: 2425257, 39: 2425285, 159: 2425579}
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | --------------------------------------------------
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | 
[2025-07-26 08:08:19] 2025-07-26 15:07:46,288 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-26 08:08:19] 2025-07-26 15:07:46,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 08:08:19] 2025-07-26 15:07:46,310 | INFO     | job 6745186026 has completed (purged errors)
[2025-07-26 08:08:19] 2025-07-26 15:07:46,311 | INFO     | overall cleanup function is called
[2025-07-26 08:08:19] 2025-07-26 15:07:47,154 | INFO     | PID=2609642 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 08:08:19] 2025-07-26 15:07:47,154 | INFO     | .. there are 35 such processes running
[2025-07-26 08:08:19] 2025-07-26 15:07:47,317 | INFO     | --- collectZombieJob: --- 10, [2615970]
[2025-07-26 08:08:19] 2025-07-26 15:07:47,317 | INFO     | zombie collector waiting for pid 2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:47,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 08:08:19] 2025-07-26 15:07:47,318 | INFO     | collected zombie processes
[2025-07-26 08:08:19] 2025-07-26 15:07:47,318 | INFO     | will attempt to kill all subprocesses of pid=2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:47,571 | INFO     | process IDs to be killed: [2615970] (in reverse order)
[2025-07-26 08:08:19] 2025-07-26 15:07:47,667 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 08:08:19] 2025-07-26 15:07:47,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 08:08:19] 2025-07-26 15:07:47,679 | INFO     | did not find any defunct processes belonging to 2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:47,689 | INFO     | did not find any defunct processes belonging to 2615970
[2025-07-26 08:08:19] 2025-07-26 15:07:47,689 | INFO     | ready for new job
[2025-07-26 08:08:19] 2025-07-26 15:07:47,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 08:08:19] 2025-07-26 15:07:47,691 | INFO     | ***************************************
[2025-07-26 08:08:19] 2025-07-26 15:07:47,692 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 08:08:19] 2025-07-26 15:07:47,692 | INFO     | ***************************************
[2025-07-26 08:08:19] 2025-07-26 15:07:47,692 | INFO     | 
[2025-07-26 08:08:19] 2025-07-26 15:07:47,694 | INFO     | architecture information:
[2025-07-26 08:08:19] 2025-07-26 15:07:47,696 | INFO     | executing command: cat /etc/os-release
[2025-07-26 08:08:19] 2025-07-26 15:07:47,713 | INFO     | cat /etc/os-release:
[2025-07-26 08:08:19] NAME="CentOS Linux"
[2025-07-26 08:08:19] VERSION="7 (Core)"
[2025-07-26 08:08:19] ID="centos"
[2025-07-26 08:08:19] ID_LIKE="rhel fedora"
[2025-07-26 08:08:19] VERSION_ID="7"
[2025-07-26 08:08:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 08:08:19] ANSI_COLOR="0;31"
[2025-07-26 08:08:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 08:08:19] HOME_URL="https://www.centos.org/"
[2025-07-26 08:08:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 08:08:19] 
[2025-07-26 08:08:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 08:08:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 08:08:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 08:08:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 08:08:19] 
[2025-07-26 08:08:19] 2025-07-26 15:07:47,713 | INFO     | ***************************************
[2025-07-26 08:08:19] 2025-07-26 15:07:48,220 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-26 08:08:19] 2025-07-26 15:07:48,241 | INFO     | sufficient remaining disk space (2084080451584 B)
[2025-07-26 08:08:19] 2025-07-26 15:07:48,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 08:08:19] 2025-07-26 15:07:48,241 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 08:08:19] 2025-07-26 15:07:48,241 | INFO     | update_server=False
[2025-07-26 08:08:19] 2025-07-26 15:07:48,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 08:08:19] 2025-07-26 15:07:48,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 08:08:19] 2025-07-26 15:07:48,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 08:08:19] 2025-07-26 15:07:48,245 | INFO     | aborting loop
[2025-07-26 08:08:19] 2025-07-26 15:07:48,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 08:08:19] 2025-07-26 15:07:48,638 | INFO     | all payload control threads have been joined
[2025-07-26 08:08:19] 2025-07-26 15:07:48,720 | INFO     | all job control threads have been joined
[2025-07-26 08:08:19] 2025-07-26 15:07:48,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 08:08:19] 2025-07-26 15:07:49,246 | INFO     | [job] retrieve thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,250 | INFO     | [job] queue monitor thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,250 | INFO     | [job] job monitor thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,346 | INFO     | all data control threads have been joined
[2025-07-26 08:08:19] 2025-07-26 15:07:49,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,445 | INFO     | [job] validate thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,466 | INFO     | [payload] validate_post thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,643 | INFO     | [payload] control thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,650 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,724 | INFO     | [job] control thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:49,888 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:50,062 | INFO     | [payload] failed_post thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:50,352 | INFO     | [data] control thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:50,488 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:50,684 | INFO     | [data] copytool_in thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:50,923 | INFO     | [data] copytool_out thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:52,579 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 08:08:19] 2025-07-26 15:07:53,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897975224128)>', '<ExcThread(monitor, started 139897184696064)>']
[2025-07-26 08:08:19] 2025-07-26 15:07:58,125 | INFO     | all workflow threads have been joined
[2025-07-26 08:08:19] 2025-07-26 15:07:58,126 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 08:08:19] 2025-07-26 15:07:58,126 | INFO     | traces error code: 0
[2025-07-26 08:08:19] 2025-07-26 15:07:58,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | INFO     | PID=2609642 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | INFO     | .. there are 35 such processes running
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 08:08:19] 2025-07-26 15:08:19,580 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 08:08:19] 2025-07-26 15:08:19,581 | INFO     | [monitor] control thread has ended
[2025-07-26 08:08:19] 2025-07-26 15:08:19,712 [wrapper] ==== pilot stdout END ====
[2025-07-26 08:08:19] 2025-07-26 15:08:19,716 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 08:08:19] 2025-07-26 15:08:19,719 [wrapper] pilotpid: 2609642
[2025-07-26 08:08:19] 2025-07-26 15:08:19,722 [wrapper] Pilot exit status: 0
[2025-07-26 08:08:19] 2025-07-26 15:08:19,736 [wrapper] pandaids: 6745186026
[2025-07-26 08:08:19] 2025-07-26 15:08:19,796 [wrapper] cleanup supervisor_pilot 2609648 2609643
[2025-07-26 08:08:19] 2025-07-26 15:08:19,801 [wrapper] Test setup, not cleaning
[2025-07-26 08:08:19] 2025-07-26 15:08:19,804 [wrapper] apfmon messages muted
[2025-07-26 08:08:19] 2025-07-26 15:08:19,808 [wrapper] ==== wrapper stdout END ====
[2025-07-26 08:08:19] 2025-07-26 15:08:19,812 [wrapper] ==== wrapper stderr END ====
[2025-07-26 08:08:19]  *** Error codes and diagnostics ***
[2025-07-26 08:08:19]     "exeErrorCode": 65,
[2025-07-26 08:08:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 08:08:19]     "pilotErrorCode": 1305,
[2025-07-26 08:08:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 08:08:19]  *** Listing of results directory ***
[2025-07-26 08:08:19] total 187548
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc    530466 Jul 26 05:28 pilot3.tar.gz
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc      5112 Jul 26 05:36 queuedata.json
[2025-07-26 08:08:19] -rwx------. 1 boinc boinc     36292 Jul 26 05:38 runpilot2-wrapper.sh
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc       100 Jul 26 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 08:08:19] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 08:04 run_atlas
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc       105 Jul 26 08:04 job.xml
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc      6591 Jul 26 08:04 init_data.xml
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc 187984372 Jul 26 08:04 EVNT.45743347._002172.pool.root.1
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc     15095 Jul 26 08:04 start_atlas.sh
[2025-07-26 08:08:19] drwxrwx--x. 2 boinc boinc      4096 Jul 26 08:04 shared
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc    542896 Jul 26 08:04 input.tar.gz
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc         0 Jul 26 08:04 boinc_lockfile
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc      2563 Jul 26 08:04 pandaJob.out
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc    980133 Jul 26 08:04 agis_schedconf.cvmfs.json
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc   1593052 Jul 26 08:04 agis_ddmendpoints.agis.ALL.json
[2025-07-26 08:08:19] drwx------. 4 boinc boinc      4096 Jul 26 08:04 pilot3
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc       957 Jul 26 08:05 memory_monitor_summary.json
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc     19880 Jul 26 08:05 log.45743349._037952.job.log.tgz.1
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc        95 Jul 26 08:07 pilot_heartbeat.json
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc      8375 Jul 26 08:07 heartbeat.json
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc      8192 Jul 26 08:08 boinc_mmap_file
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc        22 Jul 26 08:08 wrapper_checkpoint.txt
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc       523 Jul 26 08:08 boinc_task_state.xml
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc       893 Jul 26 08:08 pilotlog.txt
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc     75864 Jul 26 08:08 log.45743349._037952.job.log.1
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc       188 Jul 26 08:08 output.list
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc       620 Jul 26 08:08 runtime_log
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc    112640 Jul 26 08:08 result.tar.gz
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc       645 Jul 26 08:08 ypSKDmXLtz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSl0KDmMZ0Ozn.diag
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc      8485 Jul 26 08:08 runtime_log.err
[2025-07-26 08:08:19] -rw-r--r--. 1 boinc boinc     21763 Jul 26 08:08 stderr.txt
[2025-07-26 08:08:19] No HITS result produced
[2025-07-26 08:08:19]  *** Contents of shared directory: ***
[2025-07-26 08:08:19] total 184240
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc 187984372 Jul 26 08:04 ATLAS.root_0
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc     15095 Jul 26 08:04 start_atlas.sh
[2025-07-26 08:08:19] -rw-r--r--. 2 boinc boinc    542896 Jul 26 08:04 input.tar.gz
[2025-07-26 08:08:19] -rw-------. 1 boinc boinc    112640 Jul 26 08:08 result.tar.gz
08:08:21 (2606073): run_atlas exited; CPU time 25.230439
08:08:21 (2606073): called boinc_finish(0)

</stderr_txt>
]]>

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