Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
18:24:20 (2990024): wrapper (7.7.26015): starting
18:24:20 (2990024): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 18:24:20] Arguments: --nthreads 12
[2025-07-26 18:24:20] Threads: 12
[2025-07-26 18:24:20] Checking for CVMFS
[2025-07-26 18:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:24:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:24:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:24:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:24:21] 2.13.1.0 5295 1991 58620 148793 3 57 5020460 6144000 3668 130560 0 8309461 99.871 844925 1051 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-26 18:24:21] CVMFS is ok
[2025-07-26 18:24:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:24:21] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-26 18:24:21] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-26 18:24:21] Further information can be found at the LHC@home message board.
[2025-07-26 18:24:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:24:21] Checking for apptainer binary...
[2025-07-26 18:24:21] apptainer is not installed, using version from CVMFS
[2025-07-26 18:24:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:24:22] XeonFire
[2025-07-26 18:24:22] apptainer works
[2025-07-26 18:24:22] Set ATHENA_PROC_NUMBER=12
[2025-07-26 18:24:22] Set ATHENA_CORE_NUMBER=12
[2025-07-26 18:24:22] Starting ATLAS job with PandaID=6744931613
[2025-07-26 18:24:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:51:07]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:51:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/dd/log.45743349._009819.job.log.tgz.1
[2025-07-26 19:51:07]  workdir=None
[2025-07-26 19:51:07] ]
[2025-07-26 19:51:07] 2025-07-27 00:50:25,321 | INFO     | transferring file log.45743349._009819.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/log.45743349._009819.job.log.tgz.1 to /var/lib/boinc
[2025-07-26 19:51:07] 2025-07-27 00:50:25,321 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/log.45743349._009819.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.457433
[2025-07-26 19:51:07] 2025-07-27 00:50:25,343 | INFO     | adding to output.list: log.45743349._009819.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/dd/log.45743349._009819.job.log.tg
[2025-07-26 19:51:07] 2025-07-27 00:50:25,344 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 19:51:07] 2025-07-27 00:50:25,344 | INFO     | summary of transferred files:
[2025-07-26 19:51:07] 2025-07-27 00:50:25,344 | INFO     |  -- lfn=log.45743349._009819.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 19:51:07] 2025-07-27 00:50:25,344 | INFO     | stage-out finished correctly
[2025-07-26 19:51:07] 2025-07-27 00:50:27,231 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 19:51:07] 2025-07-27 00:50:27,523 | INFO     | job 6744931613 has state=finished
[2025-07-26 19:51:07] 2025-07-27 00:50:27,524 | INFO     | preparing for final server update for job 6744931613 in state='finished'
[2025-07-26 19:51:07] 2025-07-27 00:50:27,998 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 19:51:07] 2025-07-27 00:50:27,998 | INFO     | this job has now completed (state=finished)
[2025-07-26 19:51:07] 2025-07-27 00:50:27,999 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 19:51:07] 2025-07-27 00:50:27,999 | INFO     | log transfer has been attempted: DONE
[2025-07-26 19:51:07] 2025-07-27 00:50:27,999 | INFO     | job 6744931613 has finished - writing final server update
[2025-07-26 19:51:07] 2025-07-27 00:50:27,999 | INFO     | total number of processed events: 400 (read)
[2025-07-26 19:51:07] 2025-07-27 00:50:28,001 | INFO     | executing command: lscpu
[2025-07-26 19:51:07] 2025-07-27 00:50:28,062 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:51:07] 2025-07-27 00:50:29,184 | WARNING  | process 3000896 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 19:51:07] 2025-07-27 00:50:29,184 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:51:07] 2025-07-27 00:50:29,186 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:51:07] 2025-07-27 00:50:29,187 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3837354 B
[2025-07-26 19:51:07] 2025-07-27 00:50:29,187 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15554 B
[2025-07-26 19:51:07] 2025-07-27 00:50:29,187 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-07-26 19:51:07] 2025-07-27 00:50:35,254 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 19:51:07] 2025-07-27 00:50:35,272 | INFO     | sufficient remaining disk space (1820317450240 B)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,272 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,274 | INFO     | size of work directory /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613: 4163104 B (within 2537553920 B limit)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,275 | INFO     | pfn file=/var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/HITS.45743349._009819.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,275 | INFO     | total size of present files: 0 B (workdir size: 4163104 B)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,275 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/HITS.45743349._009819.pool.root.1 since it does not exist
[2025-07-26 19:51:07] 2025-07-27 00:50:35,276 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2424.868296875
[2025-07-26 19:51:07] 2025-07-27 00:50:35,293 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6744931613/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,294 | INFO     | extracted standard info from prmon json
[2025-07-26 19:51:07] 2025-07-27 00:50:35,295 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:51:07] 2025-07-27 00:50:35,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:51:07] 2025-07-27 00:50:35,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:51:07] 2025-07-27 00:50:35,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:51:07] 2025-07-27 00:50:35,298 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:51:07] 2025-07-27 00:50:35,298 | INFO     | sum of square deviations: 141539398.0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,299 | INFO     | sum of deviations: -4499337307.999999
[2025-07-26 19:51:07] 2025-07-27 00:50:35,299 | INFO     | mean x: 1753574930.0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,299 | INFO     | mean y: 2757935.7532467535
[2025-07-26 19:51:07] 2025-07-27 00:50:35,299 | INFO     | -- intersect: 55746425186.072395
[2025-07-26 19:51:07] 2025-07-27 00:50:35,300 | INFO     | intersect: 55746425186.072395
[2025-07-26 19:51:07] 2025-07-27 00:50:35,300 | INFO     | chi2: 0.07938064106314659
[2025-07-26 19:51:07] 2025-07-27 00:50:35,300 | INFO     | -- intersect: 55746425186.072395
[2025-07-26 19:51:07] 2025-07-27 00:50:35,300 | INFO     | current memory leak: -31.79 B/s (using 77 data points, chi2=0.08)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,301 | INFO     | could have reported an average CPU frequency of 2349 MHz (6 samples)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,301 | INFO     | ..............................
[2025-07-26 19:51:07] 2025-07-27 00:50:35,301 | INFO     | . Timing measurements:
[2025-07-26 19:51:07] 2025-07-27 00:50:35,301 | INFO     | . get job = 0 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,301 | INFO     | . initial setup = 5 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | . payload setup = 8 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | . stage-in = 0 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | . payload execution = 5118 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | . stage-out = 0 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | . log creation = 0 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,302 | INFO     | ..............................
[2025-07-26 19:51:07] 2025-07-27 00:50:35,419 | INFO     | 
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | job summary report
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | --------------------------------------------------
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | PanDA job id: 6744931613
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | task id: 45743349
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | errors: (none)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:51:07] 2025-07-27 00:50:35,420 | INFO     | pilot state: finished 
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | transexitcode: 0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | exeerrorcode: 0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | exeerrordiag: 
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | exitcode: 0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | exitmsg: OK
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | cpuconsumptiontime: 55401 s
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | nevents: 400
[2025-07-26 19:51:07] 2025-07-27 00:50:35,421 | INFO     | neventsw: 0
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | pid: 3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | pgrp: 3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | corecount: 12
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | event service: False
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | sizes: {0: 2397362, 1: 2397504, 5: 2397766, 11: 2397822, 5130: 2424052, 5131: 2433064, 5133: 2433248, 5141: 2433470}
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | --------------------------------------------------
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | 
[2025-07-26 19:51:07] 2025-07-27 00:50:35,422 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-07-26 19:51:07] 2025-07-27 00:50:35,445 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,446 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,446 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,446 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,446 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:51:07] 2025-07-27 00:50:35,449 | INFO     | job 6744931613 has completed (purged errors)
[2025-07-26 19:51:07] 2025-07-27 00:50:35,449 | INFO     | overall cleanup function is called
[2025-07-26 19:51:07] 2025-07-27 00:50:35,799 | INFO     | number of running child processes to parent process 3000896: 1
[2025-07-26 19:51:07] 2025-07-27 00:50:35,799 | INFO     | maximum number of monitored processes: 6
[2025-07-26 19:51:07] 2025-07-27 00:50:35,800 | INFO     | aborting job monitoring since job object (job id=6744931613) has expired
[2025-07-26 19:51:07] 2025-07-27 00:50:36,459 | INFO     | --- collectZombieJob: --- 10, [3000896]
[2025-07-26 19:51:07] 2025-07-27 00:50:36,460 | INFO     | zombie collector waiting for pid 3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:36,460 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:51:07] 2025-07-27 00:50:36,460 | INFO     | collected zombie processes
[2025-07-26 19:51:07] 2025-07-27 00:50:36,460 | INFO     | will attempt to kill all subprocesses of pid=3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:36,851 | INFO     | process IDs to be killed: [3000896] (in reverse order)
[2025-07-26 19:51:07] 2025-07-27 00:50:36,973 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:51:07] 2025-07-27 00:50:36,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:51:07] 2025-07-27 00:50:36,984 | INFO     | did not find any defunct processes belonging to 3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:36,993 | INFO     | did not find any defunct processes belonging to 3000896
[2025-07-26 19:51:07] 2025-07-27 00:50:36,993 | INFO     | ready for new job
[2025-07-26 19:51:07] 2025-07-27 00:50:36,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:51:07] 2025-07-27 00:50:36,995 | INFO     | ***************************************
[2025-07-26 19:51:07] 2025-07-27 00:50:36,995 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:51:07] 2025-07-27 00:50:36,996 | INFO     | ***************************************
[2025-07-26 19:51:07] 2025-07-27 00:50:36,996 | INFO     | 
[2025-07-26 19:51:07] 2025-07-27 00:50:36,999 | INFO     | architecture information:
[2025-07-26 19:51:07] 2025-07-27 00:50:37,000 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:51:07] 2025-07-27 00:50:37,015 | INFO     | cat /etc/os-release:
[2025-07-26 19:51:07] NAME="CentOS Linux"
[2025-07-26 19:51:07] VERSION="7 (Core)"
[2025-07-26 19:51:07] ID="centos"
[2025-07-26 19:51:07] ID_LIKE="rhel fedora"
[2025-07-26 19:51:07] VERSION_ID="7"
[2025-07-26 19:51:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:51:07] ANSI_COLOR="0;31"
[2025-07-26 19:51:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:51:07] HOME_URL="https://www.centos.org/"
[2025-07-26 19:51:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:51:07] 
[2025-07-26 19:51:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:51:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:51:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:51:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:51:07] 
[2025-07-26 19:51:07] 2025-07-27 00:50:37,015 | INFO     | ***************************************
[2025-07-26 19:51:07] 2025-07-27 00:50:37,518 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-07-26 19:51:07] 2025-07-27 00:50:37,537 | INFO     | sufficient remaining disk space (1820321644544 B)
[2025-07-26 19:51:07] 2025-07-27 00:50:37,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:51:07] 2025-07-27 00:50:37,537 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:51:07] 2025-07-27 00:50:37,538 | INFO     | update_server=False
[2025-07-26 19:51:07] 2025-07-27 00:50:37,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:51:07] 2025-07-27 00:50:37,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:51:07] 2025-07-27 00:50:37,538 | INFO     | aborting loop
[2025-07-26 19:51:07] 2025-07-27 00:50:37,799 | INFO     | all data control threads have been joined
[2025-07-26 19:51:07] 2025-07-27 00:50:37,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:51:07] 2025-07-27 00:50:38,314 | INFO     | all job control threads have been joined
[2025-07-26 19:51:07] 2025-07-27 00:50:38,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:51:07] 2025-07-27 00:50:38,540 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:38,544 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:38,591 | INFO     | all payload control threads have been joined
[2025-07-26 19:51:07] 2025-07-27 00:50:38,804 | INFO     | [data] control thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:38,911 | INFO     | [job] validate thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,069 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,255 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,320 | INFO     | [job] control thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,369 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,433 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,597 | INFO     | [payload] control thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:39,629 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:40,014 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:40,430 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:51:07] 2025-07-27 00:50:40,477 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:41,432 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:41,862 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:48,197 | INFO     | job.realtimelogging is not enabled
[2025-07-26 19:51:07] 2025-07-27 00:50:49,200 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:51:07] 2025-07-27 00:50:49,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123188506740544)>', '<ExcThread(monitor, started 123187832542976)>']
[2025-07-26 19:51:07] 2025-07-27 00:50:54,326 | INFO     | all workflow threads have been joined
[2025-07-26 19:51:07] 2025-07-27 00:50:54,327 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:51:07] 2025-07-27 00:50:54,327 | INFO     | traces error code: 0
[2025-07-26 19:51:07] 2025-07-27 00:50:54,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:51:07] 2025-07-27 00:51:07,038 | INFO     | PID=2993943 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 19:51:07] 2025-07-27 00:51:07,039 | INFO     | .. there are 5 such processes running
[2025-07-26 19:51:07] 2025-07-27 00:51:07,040 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:51:07] 2025-07-27 00:51:07,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:51:07] 2025-07-27 00:51:07,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:51:07] 2025-07-27 00:51:07,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:51:07] 2025-07-27 00:51:07,040 | INFO     | [monitor] control thread has ended
[2025-07-26 19:51:07] 2025-07-27 00:51:07,155 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:51:07] 2025-07-27 00:51:07,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:51:07] 2025-07-27 00:51:07,161 [wrapper] pilotpid: 2993943
[2025-07-26 19:51:07] 2025-07-27 00:51:07,164 [wrapper] Pilot exit status: 0
[2025-07-26 19:51:07] 2025-07-27 00:51:07,175 [wrapper] pandaids: 6744931613
[2025-07-26 19:51:07] 2025-07-27 00:51:07,237 [wrapper] cleanup supervisor_pilot 3100207 2993944
[2025-07-26 19:51:07] 2025-07-27 00:51:07,240 [wrapper] Test setup, not cleaning
[2025-07-26 19:51:07] 2025-07-27 00:51:07,243 [wrapper] apfmon messages muted
[2025-07-26 19:51:07] 2025-07-27 00:51:07,247 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:51:07] 2025-07-27 00:51:07,250 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:51:07]  *** Error codes and diagnostics ***
[2025-07-26 19:51:07]     "exeErrorCode": 0,
[2025-07-26 19:51:07]     "exeErrorDiag": "",
[2025-07-26 19:51:07]     "pilotErrorCode": 0,
[2025-07-26 19:51:07]     "pilotErrorDiag": "",
[2025-07-26 19:51:07]  *** Listing of results directory ***
[2025-07-26 19:51:07] total 349480
[2025-07-26 19:51:07] -rw-r--r-- 1 mark mark    530466 Jul 24 15:51 pilot3.tar.gz
[2025-07-26 19:51:07] -rw-r--r-- 1 mark mark      5112 Jul 24 15:58 queuedata.json
[2025-07-26 19:51:07] -rwx------ 1 mark mark     36292 Jul 24 16:01 runpilot2-wrapper.sh
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark       100 Jul 26 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:51:07] -rwxr-xr-x 1 mark mark      7986 Jul 26 18:24 run_atlas
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark       105 Jul 26 18:24 job.xml
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark 142785609 Jul 26 18:24 EVNT.45743347._000536.pool.root.1
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark     15095 Jul 26 18:24 start_atlas.sh
[2025-07-26 19:51:07] drwxrwx--x 2 mark mark      4096 Jul 26 18:24 shared
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark    542884 Jul 26 18:24 input.tar.gz
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark      9229 Jul 26 18:24 init_data.xml
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark         0 Jul 26 18:24 boinc_setup_complete
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark         0 Jul 26 18:24 boinc_lockfile
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark      2560 Jul 26 18:24 pandaJob.out
[2025-07-26 19:51:07] -rw------- 1 mark mark    980117 Jul 26 18:24 agis_schedconf.cvmfs.json
[2025-07-26 19:51:07] -rw------- 1 mark mark   1593052 Jul 26 18:24 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:51:07] drwx------ 4 mark mark      4096 Jul 26 18:24 pilot3
[2025-07-26 19:51:07] -rw------- 1 mark mark 209478330 Jul 26 19:49 HITS.45743349._009819.pool.root.1
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark       530 Jul 26 19:49 boinc_task_state.xml
[2025-07-26 19:51:07] -rw------- 1 mark mark      1032 Jul 26 19:50 memory_monitor_summary.json
[2025-07-26 19:51:07] -rw------- 1 mark mark    358721 Jul 26 19:50 log.45743349._009819.job.log.tgz.1
[2025-07-26 19:51:07] -rw------- 1 mark mark      7784 Jul 26 19:50 heartbeat.json
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark      8192 Jul 26 19:51 boinc_mmap_file
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark        27 Jul 26 19:51 wrapper_checkpoint.txt
[2025-07-26 19:51:07] -rw------- 1 mark mark        95 Jul 26 19:51 pilot_heartbeat.json
[2025-07-26 19:51:07] -rw------- 1 mark mark       822 Jul 26 19:51 pilotlog.txt
[2025-07-26 19:51:07] -rw------- 1 mark mark    503581 Jul 26 19:51 log.45743349._009819.job.log.1
[2025-07-26 19:51:07] -rw------- 1 mark mark       357 Jul 26 19:51 output.list
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark       620 Jul 26 19:51 runtime_log
[2025-07-26 19:51:07] -rw------- 1 mark mark    880640 Jul 26 19:51 result.tar.gz
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark      8716 Jul 26 19:51 runtime_log.err
[2025-07-26 19:51:07] -rw------- 1 mark mark       645 Jul 26 19:51 5ZVLDmzEIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxjNLDmGITHYn.diag
[2025-07-26 19:51:07] -rw-rw-r-- 1 mark mark     22731 Jul 26 19:51 stderr.txt
[2025-07-26 19:51:07] HITS file was successfully produced:
[2025-07-26 19:51:07] -rw------- 1 mark mark 209478330 Jul 26 19:49 shared/HITS.pool.root.1
[2025-07-26 19:51:07]  *** Contents of shared directory: ***
[2025-07-26 19:51:07] total 345428
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark 142785609 Jul 26 18:24 ATLAS.root_0
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark     15095 Jul 26 18:24 start_atlas.sh
[2025-07-26 19:51:07] -rw-r--r-- 2 mark mark    542884 Jul 26 18:24 input.tar.gz
[2025-07-26 19:51:07] -rw------- 1 mark mark 209478330 Jul 26 19:49 HITS.pool.root.1
[2025-07-26 19:51:07] -rw------- 1 mark mark    880640 Jul 26 19:51 result.tar.gz
19:51:08 (2990024): run_atlas exited; CPU time 55590.809385
19:51:08 (2990024): called boinc_finish(0)

</stderr_txt>
]]>

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