Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:56:58 (4072030): wrapper (7.7.26015): starting
00:56:58 (4072030): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 00:56:58] Arguments: --nthreads 12
[2025-07-27 00:56:58] Threads: 12
[2025-07-27 00:56:58] Checking for CVMFS
[2025-07-27 00:56:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 00:56:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 00:56:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 00:57:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 00:57:00] 2.13.1.0 3863 3370 150940 148792 3 338 29706223 46080001 55576 130560 0 22012584 99.936 4625013 21065 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-27 00:57:00] CVMFS is ok
[2025-07-27 00:57:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:57:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 00:57:00] Further information can be found at the LHC@home message board.
[2025-07-27 00:57:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:57:00] Checking for apptainer binary...
[2025-07-27 00:57:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 00:57:00] Running /usr/bin/apptainer --version
[2025-07-27 00:57:01] apptainer version 1.4.1-1.el9
[2025-07-27 00:57:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:57:02] mff2103.farm.particle.cz
[2025-07-27 00:57:02] apptainer works
[2025-07-27 00:57:02] Set ATHENA_PROC_NUMBER=12
[2025-07-27 00:57:02] Set ATHENA_CORE_NUMBER=12
[2025-07-27 00:57:02] Starting ATLAS job with PandaID=6745102835
[2025-07-27 00:57:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 03:13:49]  *** The last 200 lines of the pilot log: ***
[2025-07-27 03:13:50] 2025-07-27 01:11:14,819 | INFO     | chi2: 0.0009793455547746869
[2025-07-27 03:13:50] 2025-07-27 01:11:14,819 | INFO     | current chi2=0.0009793455547746869 (change=47.49787245823136 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,819 | INFO     | sum of square deviations: 329031285.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,819 | INFO     | sum of deviations: 1953115598.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | mean x: 1753575487.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | mean y: 2692228.0098039214
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | -- intersect: -10406456654.531616
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | intersect: -10406456654.531616
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | chi2: 0.0006542620840001977
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | current chi2=0.0006542620840001977 (change=33.193949693198896 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,820 | INFO     | sum of square deviations: 282974608.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | sum of deviations: 1403731329.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | mean x: 1753575640.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | mean y: 2694046.9793814435
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | -- intersect: -8696139678.904694
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | intersect: -8696139678.904694
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | chi2: 0.00038581583411787017
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | current chi2=0.00038581583411787017 (change=41.03038468025398 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,821 | INFO     | sum of square deviations: 241429643.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | sum of deviations: 945409110.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | mean x: 1753575792.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | mean y: 2695724.7391304346
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | -- intersect: -6864093741.146671
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | intersect: -6864093741.146671
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | chi2: 0.0001288573204405359
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | current chi2=0.0001288573204405359 (change=66.60133953932827 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,822 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | sum of deviations: 684998340.9999998
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | mean x: 1753575945.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | mean y: 2696783.0344827585
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | -- intersect: -5880797001.880771
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | intersect: -5880797001.880771
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | chi2: 5.649602125871945e-05
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | current chi2=5.649602125871945e-05 (change=56.156141486124724 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,823 | INFO     | sum of square deviations: 170944600.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | sum of deviations: 590771793.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | mean x: 1753576097.5
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | mean y: 2697215.524390244
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | -- intersect: -6057531028.7646475
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | intersect: -6057531028.7646475
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | chi2: 5.496469223060144e-05
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | current chi2=5.496469223060144e-05 (change=2.710507738421796 %)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | left removable region: 90
[2025-07-27 03:13:50] 2025-07-27 01:11:14,824 | INFO     | sum of square deviations: 9228080.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | sum of deviations: 3654448.9999999953
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | mean x: 1753577287.0
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | mean y: 2702580.6129032257
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | -- intersect: -691738599.2316425
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | intersect: -691738599.2316425
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | chi2: 1.1626686941225401e-05
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | -- intersect: -691738599.2316425
[2025-07-27 03:13:50] 2025-07-27 01:11:14,825 | INFO     | current memory leak: 0.40 B/s (using 31 data points, chi2=0.00)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | could have reported an average CPU frequency of 2816 MHz (8 samples)
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | ..............................
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . Timing measurements:
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . get job = 0 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . initial setup = 5 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . payload setup = 56 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . stage-in = 0 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . payload execution = 7773 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . stage-out = 1 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | . log creation = 0 s
[2025-07-27 03:13:50] 2025-07-27 01:11:14,826 | INFO     | ..............................
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | job summary report
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | --------------------------------------------------
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | PanDA job id: 6745102835
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | task id: 45743349
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | errors: (none)
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,166 | INFO     | pilot state: finished 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | transexitcode: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | exeerrorcode: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | exeerrordiag: 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | exitcode: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | exitmsg: OK
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | cpuconsumptiontime: 42207 s
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | nevents: 400
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | neventsw: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | pid: 4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | pgrp: 4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | corecount: 12
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | event service: False
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | sizes: {0: 2397305, 1: 2397504, 12: 2397504, 22: 2397532, 33: 2397560, 39: 2397878, 44: 2398034, 7834: 2425692, 7835: 2425691, 7838: 2434747, 7840: 2434803, 7884: 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,167 | INFO     | --------------------------------------------------
[2025-07-27 03:13:50] 2025-07-27 01:11:15,168 | INFO     | 
[2025-07-27 03:13:50] 2025-07-27 01:11:15,168 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-07-27 03:13:50] 2025-07-27 01:11:15,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | job 6745102835 has completed (purged errors)
[2025-07-27 03:13:50] 2025-07-27 01:11:15,397 | INFO     | overall cleanup function is called
[2025-07-27 03:13:50] 2025-07-27 01:11:16,412 | INFO     | --- collectZombieJob: --- 10, [4130769]
[2025-07-27 03:13:50] 2025-07-27 01:11:16,412 | INFO     | zombie collector waiting for pid 4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:16,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 03:13:50] 2025-07-27 01:11:16,412 | INFO     | collected zombie processes
[2025-07-27 03:13:50] 2025-07-27 01:11:16,412 | INFO     | will attempt to kill all subprocesses of pid=4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:17,507 | INFO     | PID=4088006 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 03:13:50] 2025-07-27 01:11:17,507 | INFO     | .. there are 97 such processes running
[2025-07-27 03:13:50] 2025-07-27 01:11:17,821 | INFO     | process IDs to be killed: [4130769] (in reverse order)
[2025-07-27 03:13:50] 2025-07-27 01:11:18,239 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 03:13:50] 2025-07-27 01:11:18,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 03:13:50] 2025-07-27 01:11:18,270 | INFO     | did not find any defunct processes belonging to 4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:18,300 | INFO     | did not find any defunct processes belonging to 4130769
[2025-07-27 03:13:50] 2025-07-27 01:11:18,301 | INFO     | ready for new job
[2025-07-27 03:13:50] 2025-07-27 01:11:18,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 03:13:50] 2025-07-27 01:11:18,303 | INFO     | ***************************************
[2025-07-27 03:13:50] 2025-07-27 01:11:18,303 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 03:13:50] 2025-07-27 01:11:18,303 | INFO     | ***************************************
[2025-07-27 03:13:50] 2025-07-27 01:11:18,303 | INFO     | 
[2025-07-27 03:13:50] 2025-07-27 01:11:18,309 | INFO     | architecture information:
[2025-07-27 03:13:50] 2025-07-27 01:11:18,310 | INFO     | executing command: cat /etc/os-release
[2025-07-27 03:13:50] 2025-07-27 01:11:18,398 | INFO     | cat /etc/os-release:
[2025-07-27 03:13:50] NAME="CentOS Linux"
[2025-07-27 03:13:50] VERSION="7 (Core)"
[2025-07-27 03:13:50] ID="centos"
[2025-07-27 03:13:50] ID_LIKE="rhel fedora"
[2025-07-27 03:13:50] VERSION_ID="7"
[2025-07-27 03:13:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 03:13:50] ANSI_COLOR="0;31"
[2025-07-27 03:13:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 03:13:50] HOME_URL="https://www.centos.org/"
[2025-07-27 03:13:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 03:13:50] 
[2025-07-27 03:13:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 03:13:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 03:13:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 03:13:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 03:13:50] 
[2025-07-27 03:13:50] 2025-07-27 01:11:18,398 | INFO     | ***************************************
[2025-07-27 03:13:50] 2025-07-27 01:11:18,903 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-07-27 03:13:50] 2025-07-27 01:11:19,058 | INFO     | sufficient remaining disk space (1670531514368 B)
[2025-07-27 03:13:50] 2025-07-27 01:11:19,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 03:13:50] 2025-07-27 01:11:19,059 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 03:13:50] 2025-07-27 01:11:19,059 | INFO     | update_server=False
[2025-07-27 03:13:50] 2025-07-27 01:11:19,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 03:13:50] 2025-07-27 01:11:19,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 03:13:50] 2025-07-27 01:11:19,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:13:50] 2025-07-27 01:11:19,167 | INFO     | aborting loop
[2025-07-27 03:13:50] 2025-07-27 01:11:19,383 | INFO     | all data control threads have been joined
[2025-07-27 03:13:50] 2025-07-27 01:11:19,637 | INFO     | all job control threads have been joined
[2025-07-27 03:13:50] 2025-07-27 01:11:19,948 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:13:50] 2025-07-27 01:11:20,065 | INFO     | [job] retrieve thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,173 | INFO     | [job] job monitor thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,214 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,215 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,389 | INFO     | [data] control thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,516 | INFO     | all payload control threads have been joined
[2025-07-27 03:13:50] 2025-07-27 01:11:20,645 | INFO     | [job] control thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:20,953 | INFO     | [job] queue monitor thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,085 | INFO     | [data] copytool_out thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,150 | INFO     | [payload] validate_post thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,270 | INFO     | [data] copytool_in thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,362 | INFO     | [job] validate thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,390 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 03:13:50] 2025-07-27 01:11:21,522 | INFO     | [payload] control thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:21,526 | INFO     | [payload] failed_post thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:25,434 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:29,812 | INFO     | job.realtimelogging is not enabled
[2025-07-27 03:13:50] 2025-07-27 01:11:30,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 03:13:50] 2025-07-27 01:11:32,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628885378880)>', '<ExcThread(monitor, started 140628537095936)>']
[2025-07-27 03:13:50] 2025-07-27 01:11:37,761 | INFO     | all workflow threads have been joined
[2025-07-27 03:13:50] 2025-07-27 01:11:37,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 03:13:50] 2025-07-27 01:11:37,761 | INFO     | traces error code: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:37,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 03:13:50] 2025-07-27 01:11:50,651 | INFO     | PID=4088006 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 03:13:50] 2025-07-27 01:11:50,651 | INFO     | .. there are 97 such processes running
[2025-07-27 03:13:50] 2025-07-27 01:11:50,651 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 03:13:50] 2025-07-27 01:11:50,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 03:13:50] 2025-07-27 01:11:50,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 03:13:50] 2025-07-27 01:11:50,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 03:13:50] 2025-07-27 01:11:50,652 | INFO     | [monitor] control thread has ended
[2025-07-27 03:13:50] 2025-07-27 01:11:50,928 [wrapper] ==== pilot stdout END ====
[2025-07-27 03:13:50] 2025-07-27 01:11:50,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 03:13:50] 2025-07-27 01:11:51,015 [wrapper] pilotpid: 4088006
[2025-07-27 03:13:50] 2025-07-27 01:11:51,050 [wrapper] Pilot exit status: 0
[2025-07-27 03:13:50] 2025-07-27 01:11:51,214 [wrapper] pandaids: 6745102835
[2025-07-27 03:13:50] 2025-07-27 01:11:51,572 [wrapper] cleanup supervisor_pilot  121366 4088007
[2025-07-27 03:13:50] 2025-07-27 01:11:51,620 [wrapper] Test setup, not cleaning
[2025-07-27 03:13:50] 2025-07-27 01:11:51,645 [wrapper] apfmon messages muted
[2025-07-27 03:13:50] 2025-07-27 01:11:51,703 [wrapper] ==== wrapper stdout END ====
[2025-07-27 03:13:50] 2025-07-27 01:11:51,744 [wrapper] ==== wrapper stderr END ====
[2025-07-27 03:13:50]  *** Error codes and diagnostics ***
[2025-07-27 03:13:50]     "exeErrorCode": 0,
[2025-07-27 03:13:50]     "exeErrorDiag": "",
[2025-07-27 03:13:50]     "pilotErrorCode": 0,
[2025-07-27 03:13:50]     "pilotErrorDiag": "",
[2025-07-27 03:13:50]  *** Listing of results directory ***
[2025-07-27 03:13:50] total 343468
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc    530466 Jul 26 11:28 pilot3.tar.gz
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc      5112 Jul 26 11:28 queuedata.json
[2025-07-27 03:13:50] -rwx------ 1 boinc boinc     36292 Jul 26 11:29 runpilot2-wrapper.sh
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc       100 Jul 27 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 03:13:50] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 00:56 run_atlas
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc       105 Jul 27 00:56 job.xml
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc      6664 Jul 27 00:56 init_data.xml
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc 142902329 Jul 27 00:56 EVNT.45743347._002027.pool.root.1
[2025-07-27 03:13:50] drwxrwx--x 2 boinc boinc      4096 Jul 27 00:56 shared
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc    542890 Jul 27 00:56 input.tar.gz
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc     15095 Jul 27 00:56 start_atlas.sh
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc         0 Jul 27 00:56 boinc_lockfile
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc      2563 Jul 27 00:57 pandaJob.out
[2025-07-27 03:13:50] -rw------- 1 boinc boinc    980125 Jul 27 00:58 agis_schedconf.cvmfs.json
[2025-07-27 03:13:50] -rw------- 1 boinc boinc   1593052 Jul 27 00:58 agis_ddmendpoints.agis.ALL.json
[2025-07-27 03:13:50] drwx------ 4 boinc boinc      4096 Jul 27 00:58 pilot3
[2025-07-27 03:13:50] -rw------- 1 boinc boinc 202752357 Jul 27 03:09 HITS.45743349._035615.pool.root.1
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc       528 Jul 27 03:09 boinc_task_state.xml
[2025-07-27 03:13:50] -rw------- 1 boinc boinc      1015 Jul 27 03:10 memory_monitor_summary.json
[2025-07-27 03:13:50] -rw------- 1 boinc boinc    390450 Jul 27 03:10 log.45743349._035615.job.log.tgz.1
[2025-07-27 03:13:50] -rw------- 1 boinc boinc        95 Jul 27 03:10 pilot_heartbeat.json
[2025-07-27 03:13:50] -rw------- 1 boinc boinc      7766 Jul 27 03:11 heartbeat.json
[2025-07-27 03:13:50] -rw------- 1 boinc boinc       823 Jul 27 03:11 pilotlog.txt
[2025-07-27 03:13:50] -rw------- 1 boinc boinc    696383 Jul 27 03:11 log.45743349._035615.job.log.1
[2025-07-27 03:13:50] -rw------- 1 boinc boinc       357 Jul 27 03:11 output.list
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc       620 Jul 27 03:11 runtime_log
[2025-07-27 03:13:50] -rw------- 1 boinc boinc   1105920 Jul 27 03:11 result.tar.gz
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc      8721 Jul 27 03:11 runtime_log.err
[2025-07-27 03:13:50] -rw------- 1 boinc boinc       663 Jul 27 03:11 NtMLDmGPqz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAW0KDm2eLnVn.diag
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc        25 Jul 27 03:13 wrapper_checkpoint.txt
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc      8192 Jul 27 03:13 boinc_mmap_file
[2025-07-27 03:13:50] -rw-r--r-- 1 boinc boinc     21164 Jul 27 03:13 stderr.txt
[2025-07-27 03:13:50] HITS file was successfully produced:
[2025-07-27 03:13:50] -rw------- 1 boinc boinc 202752357 Jul 27 03:09 shared/HITS.pool.root.1
[2025-07-27 03:13:50]  *** Contents of shared directory: ***
[2025-07-27 03:13:50] total 339196
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc 142902329 Jul 27 00:56 ATLAS.root_0
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc    542890 Jul 27 00:56 input.tar.gz
[2025-07-27 03:13:50] -rw-r--r-- 2 boinc boinc     15095 Jul 27 00:56 start_atlas.sh
[2025-07-27 03:13:50] -rw------- 1 boinc boinc 202752357 Jul 27 03:09 HITS.pool.root.1
[2025-07-27 03:13:50] -rw------- 1 boinc boinc   1105920 Jul 27 03:11 result.tar.gz
03:13:52 (4072030): run_atlas exited; CPU time 42683.887440
03:13:52 (4072030): called boinc_finish(0)

</stderr_txt>
]]>

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