Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:56:53 (768830): wrapper (7.7.26015): starting
11:56:53 (768830): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 11:56:53] Arguments: --nthreads 12
[2025-07-26 11:56:53] Threads: 12
[2025-07-26 11:56:53] Checking for CVMFS
[2025-07-26 11:56:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 11:56:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 11:56:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 11:56:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 11:56:53] 2.13.0.0 3608313 17133 302112 148782 1 324 22635093 32935936 7075 16776704 0 45994632 99.720 66963476 26886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 11:56:53] CVMFS is ok
[2025-07-26 11:56:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 11:56:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 11:56:53] Further information can be found at the LHC@home message board.
[2025-07-26 11:56:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 11:56:53] Checking for apptainer binary...
[2025-07-26 11:56:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 11:56:53] Running /usr/bin/apptainer --version
[2025-07-26 11:56:53] apptainer version 1.4.1-1.el9
[2025-07-26 11:56:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 11:56:53] c6-6-39-3.aglt2.org
[2025-07-26 11:56:53] apptainer works
[2025-07-26 11:56:53] Set ATHENA_PROC_NUMBER=12
[2025-07-26 11:56:53] Set ATHENA_CORE_NUMBER=12
[2025-07-26 11:56:54] Starting ATLAS job with PandaID=6745068777
[2025-07-26 11:56:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 13:08:58]  *** The last 200 lines of the pilot log: ***
[2025-07-26 13:08:58]  protocol_id=None
[2025-07-26 13:08:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 13:08:58]  replicas=None
[2025-07-26 13:08:58]  scope=mc23_13p6TeV
[2025-07-26 13:08:58]  status=None
[2025-07-26 13:08:58]  status_code=0
[2025-07-26 13:08:58]  storage_token=
[2025-07-26 13:08:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745068777/log.45743349._029988.job.log.tgz.1
[2025-07-26 13:08:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/ee/log.45743349._029988.job.log.tgz.1
[2025-07-26 13:08:58]  workdir=None
[2025-07-26 13:08:58] ]
[2025-07-26 13:08:58] 2025-07-26 17:08:17,531 | INFO     | transferring file log.45743349._029988.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745068777/log.45743349._029988.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 13:08:58] 2025-07-26 17:08:17,531 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745068777/log.45743349._029988.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._029988.job
[2025-07-26 13:08:58] 2025-07-26 17:08:17,553 | INFO     | adding to output.list: log.45743349._029988.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/ee/log.45743349._029988.job.log.tg
[2025-07-26 13:08:58] 2025-07-26 17:08:17,553 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 13:08:58] 2025-07-26 17:08:17,554 | INFO     | summary of transferred files:
[2025-07-26 13:08:58] 2025-07-26 17:08:17,554 | INFO     |  -- lfn=log.45743349._029988.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 13:08:58] 2025-07-26 17:08:17,554 | INFO     | stage-out finished correctly
[2025-07-26 13:08:58] 2025-07-26 17:08:17,962 | INFO     | PID=772574 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 13:08:58] 2025-07-26 17:08:17,962 | INFO     | .. there are 20 such processes running
[2025-07-26 13:08:58] 2025-07-26 17:08:18,957 | INFO     | monitor loop #319: job 0:6745068777 is in state 'finished'
[2025-07-26 13:08:58] 2025-07-26 17:08:18,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:08:58] 2025-07-26 17:08:19,245 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 13:08:58] 2025-07-26 17:08:20,264 | INFO     | job 6745068777 has state=finished
[2025-07-26 13:08:58] 2025-07-26 17:08:20,264 | INFO     | preparing for final server update for job 6745068777 in state='finished'
[2025-07-26 13:08:58] 2025-07-26 17:08:20,265 | INFO     | this job has now completed (state=finished)
[2025-07-26 13:08:58] 2025-07-26 17:08:20,265 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 13:08:58] 2025-07-26 17:08:20,265 | INFO     | log transfer has been attempted: DONE
[2025-07-26 13:08:58] 2025-07-26 17:08:20,265 | INFO     | job 6745068777 has finished - writing final server update
[2025-07-26 13:08:58] 2025-07-26 17:08:20,265 | INFO     | total number of processed events: 400 (read)
[2025-07-26 13:08:58] 2025-07-26 17:08:20,266 | INFO     | executing command: lscpu
[2025-07-26 13:08:58] 2025-07-26 17:08:20,328 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 13:08:58] 2025-07-26 17:08:21,462 | INFO     | monitor loop #320: job 0:6745068777 is in state 'finished'
[2025-07-26 13:08:58] 2025-07-26 17:08:21,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:08:58] 2025-07-26 17:08:23,965 | INFO     | monitor loop #321: job 0:6745068777 is in state 'finished'
[2025-07-26 13:08:58] 2025-07-26 17:08:23,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,225 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 13:08:58] 2025-07-26 17:08:25,232 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2908.973607142857
[2025-07-26 13:08:58] 2025-07-26 17:08:25,241 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745068777/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,242 | INFO     | extracted standard info from prmon json
[2025-07-26 13:08:58] 2025-07-26 17:08:25,242 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 13:08:58] 2025-07-26 17:08:25,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 13:08:58] 2025-07-26 17:08:25,243 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 13:08:58] 2025-07-26 17:08:25,243 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 13:08:58] 2025-07-26 17:08:25,244 | INFO     | fitting pss+swap vs Time
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | sum of square deviations: 77515872.0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | sum of deviations: -6274454266.0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | mean x: 1753547652.0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | mean y: 2478950.0317460317
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | -- intersect: 141941855517.00998
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | intersect: 141941855517.00998
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | chi2: 0.14397726615908596
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | -- intersect: 141941855517.00998
[2025-07-26 13:08:58] 2025-07-26 17:08:25,245 | INFO     | current memory leak: -80.94 B/s (using 63 data points, chi2=0.14)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | could have reported an average CPU frequency of 2863 MHz (6 samples)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | ..............................
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . Timing measurements:
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . get job = 0 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . initial setup = 3 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . payload setup = 7 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . stage-in = 0 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . payload execution = 4242 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . stage-out = 0 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | . log creation = 0 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,246 | INFO     | ..............................
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | 
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | job summary report
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | --------------------------------------------------
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | PanDA job id: 6745068777
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | task id: 45743349
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | errors: (none)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | pilot state: finished 
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | transexitcode: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,328 | INFO     | exeerrorcode: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | exeerrordiag: 
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | exitcode: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | exitmsg: OK
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | cpuconsumptiontime: 46362 s
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | nevents: 400
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | neventsw: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | pid: 781601
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | pgrp: 781601
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | corecount: 12
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | event service: False
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | sizes: {0: 2397303, 1: 2397502, 6: 2397764, 11: 2397792, 4254: 2423752, 4255: 2432750, 4256: 2432934, 4262: 2433128}
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | --------------------------------------------------
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | 
[2025-07-26 13:08:58] 2025-07-26 17:08:25,329 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 13:08:58] 2025-07-26 17:08:25,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | job 6745068777 has completed (purged errors)
[2025-07-26 13:08:58] 2025-07-26 17:08:25,352 | INFO     | overall cleanup function is called
[2025-07-26 13:08:58] 2025-07-26 17:08:26,361 | INFO     | --- collectZombieJob: --- 10, [781601]
[2025-07-26 13:08:58] 2025-07-26 17:08:26,361 | INFO     | zombie collector waiting for pid 781601
[2025-07-26 13:08:58] 2025-07-26 17:08:26,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 13:08:58] 2025-07-26 17:08:26,362 | INFO     | collected zombie processes
[2025-07-26 13:08:58] 2025-07-26 17:08:26,362 | INFO     | will attempt to kill all subprocesses of pid=781601
[2025-07-26 13:08:58] 2025-07-26 17:08:26,647 | INFO     | process IDs to be killed: [781601] (in reverse order)
[2025-07-26 13:08:58] 2025-07-26 17:08:26,762 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 13:08:58] 2025-07-26 17:08:26,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 13:08:58] 2025-07-26 17:08:26,775 | INFO     | did not find any defunct processes belonging to 781601
[2025-07-26 13:08:58] 2025-07-26 17:08:26,788 | INFO     | did not find any defunct processes belonging to 781601
[2025-07-26 13:08:58] 2025-07-26 17:08:26,788 | INFO     | ready for new job
[2025-07-26 13:08:58] 2025-07-26 17:08:26,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 13:08:58] 2025-07-26 17:08:26,790 | INFO     | ***************************************
[2025-07-26 13:08:58] 2025-07-26 17:08:26,790 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 13:08:58] 2025-07-26 17:08:26,790 | INFO     | ***************************************
[2025-07-26 13:08:58] 2025-07-26 17:08:26,790 | INFO     | 
[2025-07-26 13:08:58] 2025-07-26 17:08:26,804 | INFO     | architecture information:
[2025-07-26 13:08:58] 2025-07-26 17:08:26,805 | INFO     | executing command: cat /etc/os-release
[2025-07-26 13:08:58] 2025-07-26 17:08:26,819 | INFO     | cat /etc/os-release:
[2025-07-26 13:08:58] NAME="CentOS Linux"
[2025-07-26 13:08:58] VERSION="7 (Core)"
[2025-07-26 13:08:58] ID="centos"
[2025-07-26 13:08:58] ID_LIKE="rhel fedora"
[2025-07-26 13:08:58] VERSION_ID="7"
[2025-07-26 13:08:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 13:08:58] ANSI_COLOR="0;31"
[2025-07-26 13:08:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 13:08:58] HOME_URL="https://www.centos.org/"
[2025-07-26 13:08:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 13:08:58] 
[2025-07-26 13:08:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 13:08:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 13:08:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 13:08:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 13:08:58] 
[2025-07-26 13:08:58] 2025-07-26 17:08:26,819 | INFO     | ***************************************
[2025-07-26 13:08:58] 2025-07-26 17:08:27,322 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 13:08:58] 2025-07-26 17:08:27,339 | INFO     | sufficient remaining disk space (73956065280 B)
[2025-07-26 13:08:58] 2025-07-26 17:08:27,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 13:08:58] 2025-07-26 17:08:27,340 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 13:08:58] 2025-07-26 17:08:27,340 | INFO     | update_server=False
[2025-07-26 13:08:58] 2025-07-26 17:08:27,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 13:08:58] 2025-07-26 17:08:27,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:08:58] 2025-07-26 17:08:27,474 | INFO     | aborting loop
[2025-07-26 13:08:58] 2025-07-26 17:08:28,016 | INFO     | all payload control threads have been joined
[2025-07-26 13:08:58] 2025-07-26 17:08:28,131 | INFO     | all data control threads have been joined
[2025-07-26 13:08:58] 2025-07-26 17:08:28,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 13:08:58] 2025-07-26 17:08:28,345 | INFO     | [job] retrieve thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:28,479 | INFO     | [job] job monitor thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:28,577 | INFO     | [job] validate thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:28,706 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:28,727 | INFO     | all job control threads have been joined
[2025-07-26 13:08:58] 2025-07-26 17:08:28,869 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:28,995 | INFO     | [payload] validate_post thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,021 | INFO     | [payload] control thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,128 | INFO     | [data] copytool_in thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,137 | INFO     | [data] control thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,403 | INFO     | [payload] failed_post thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,715 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,732 | INFO     | [job] control thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:29,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 13:08:58] 2025-07-26 17:08:30,159 | INFO     | [data] copytool_out thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:30,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 13:08:58] 2025-07-26 17:08:31,345 | INFO     | [job] queue monitor thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:33,848 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:38,088 | INFO     | job.realtimelogging is not enabled
[2025-07-26 13:08:58] 2025-07-26 17:08:39,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 13:08:58] 2025-07-26 17:08:40,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622781994816)>', '<ExcThread(monitor, started 139621996422912)>']
[2025-07-26 13:08:58] 2025-07-26 17:08:45,331 | INFO     | all workflow threads have been joined
[2025-07-26 13:08:58] 2025-07-26 17:08:45,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 13:08:58] 2025-07-26 17:08:45,333 | INFO     | traces error code: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:45,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 13:08:58] 2025-07-26 17:08:58,455 | INFO     | PID=772574 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 13:08:58] 2025-07-26 17:08:58,455 | INFO     | .. there are 20 such processes running
[2025-07-26 13:08:58] 2025-07-26 17:08:58,456 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 13:08:58] 2025-07-26 17:08:58,456 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 13:08:58] 2025-07-26 17:08:58,456 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 13:08:58] 2025-07-26 17:08:58,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 13:08:58] 2025-07-26 17:08:58,456 | INFO     | [monitor] control thread has ended
[2025-07-26 13:08:58] 2025-07-26 17:08:58,623 [wrapper] ==== pilot stdout END ====
[2025-07-26 13:08:58] 2025-07-26 17:08:58,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 13:08:58] 2025-07-26 17:08:58,630 [wrapper] pilotpid: 772574
[2025-07-26 13:08:58] 2025-07-26 17:08:58,634 [wrapper] Pilot exit status: 0
[2025-07-26 13:08:58] 2025-07-26 17:08:58,648 [wrapper] pandaids: 6745068777
[2025-07-26 13:08:58] 2025-07-26 17:08:58,721 [wrapper] cleanup supervisor_pilot 1100304 772575
[2025-07-26 13:08:58] 2025-07-26 17:08:58,724 [wrapper] Test setup, not cleaning
[2025-07-26 13:08:58] 2025-07-26 17:08:58,728 [wrapper] apfmon messages muted
[2025-07-26 13:08:58] 2025-07-26 17:08:58,732 [wrapper] ==== wrapper stdout END ====
[2025-07-26 13:08:58] 2025-07-26 17:08:58,735 [wrapper] ==== wrapper stderr END ====
[2025-07-26 13:08:58]  *** Error codes and diagnostics ***
[2025-07-26 13:08:58]     "exeErrorCode": 0,
[2025-07-26 13:08:58]     "exeErrorDiag": "",
[2025-07-26 13:08:58]     "pilotErrorCode": 0,
[2025-07-26 13:08:58]     "pilotErrorDiag": "",
[2025-07-26 13:08:58]  *** Listing of results directory ***
[2025-07-26 13:08:58] total 354872
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 21:05 pilot3.tar.gz
[2025-07-26 13:08:58] -rwx------. 1 boincer umatlas     36292 Jul 25 21:06 runpilot2-wrapper.sh
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 21:06 queuedata.json
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas       100 Jul 26 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 13:08:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 11:56 run_atlas
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas       105 Jul 26 11:56 job.xml
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas 147037282 Jul 26 11:56 EVNT.45743347._001677.pool.root.1
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:56 start_atlas.sh
[2025-07-26 13:08:58] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 11:56 shared
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 11:56 input.tar.gz
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas         0 Jul 26 11:56 boinc_lockfile
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 11:56 pandaJob.out
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas    980133 Jul 26 11:57 agis_schedconf.cvmfs.json
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas   1593052 Jul 26 11:57 agis_ddmendpoints.agis.ALL.json
[2025-07-26 13:08:58] drwx------. 4 boincer umatlas      4096 Jul 26 11:57 pilot3
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas      6840 Jul 26 13:00 init_data.xml
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas       529 Jul 26 13:07 boinc_task_state.xml
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas 210879096 Jul 26 13:07 HITS.45743349._029988.pool.root.1
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas      1039 Jul 26 13:08 memory_monitor_summary.json
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas    366390 Jul 26 13:08 log.45743349._029988.job.log.tgz.1
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas      7826 Jul 26 13:08 heartbeat.json
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas        27 Jul 26 13:08 wrapper_checkpoint.txt
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 13:08 boinc_mmap_file
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas        95 Jul 26 13:08 pilot_heartbeat.json
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas       822 Jul 26 13:08 pilotlog.txt
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas    430904 Jul 26 13:08 log.45743349._029988.job.log.1
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas       357 Jul 26 13:08 output.list
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas       620 Jul 26 13:08 runtime_log
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas    819200 Jul 26 13:08 result.tar.gz
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 13:08 runtime_log.err
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas       654 Jul 26 13:08 FXQLDm0Xiz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJvQLDmG54pZn.diag
[2025-07-26 13:08:58] -rw-r--r--. 1 boincer umatlas     21890 Jul 26 13:08 stderr.txt
[2025-07-26 13:08:58] HITS file was successfully produced:
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas 210879096 Jul 26 13:07 shared/HITS.pool.root.1
[2025-07-26 13:08:58]  *** Contents of shared directory: ***
[2025-07-26 13:08:58] total 350884
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas 147037282 Jul 26 11:56 ATLAS.root_0
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 11:56 start_atlas.sh
[2025-07-26 13:08:58] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 11:56 input.tar.gz
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas 210879096 Jul 26 13:07 HITS.pool.root.1
[2025-07-26 13:08:58] -rw-------. 1 boincer umatlas    819200 Jul 26 13:08 result.tar.gz
13:09:00 (768830): run_atlas exited; CPU time 46418.168735
13:09:00 (768830): called boinc_finish(0)

</stderr_txt>
]]>

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