Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:12:11 (2353376): wrapper (7.7.26015): starting
07:12:11 (2353376): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 07:12:11] Arguments: --nthreads 12
[2025-07-26 07:12:11] Threads: 12
[2025-07-26 07:12:11] Checking for CVMFS
[2025-07-26 07:12:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 07:12:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 07:12:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 07:12:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 07:12:12] 2.11.5.0 7890 35805 306400 148779 3 57 40884706 45568000 15530 130560 0 232967901 99.715 189955570 22202 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-26 07:12:12] CVMFS is ok
[2025-07-26 07:12:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 07:12:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 07:12:12] Further information can be found at the LHC@home message board.
[2025-07-26 07:12:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 07:12:12] Checking for apptainer binary...
[2025-07-26 07:12:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 07:12:12] Running /usr/bin/apptainer --version
[2025-07-26 07:12:12] apptainer version 1.4.1-1.el9
[2025-07-26 07:12:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 07:12:12] wns0052.triumf.lcg
[2025-07-26 07:12:12] apptainer works
[2025-07-26 07:12:12] Set ATHENA_PROC_NUMBER=12
[2025-07-26 07:12:12] Set ATHENA_CORE_NUMBER=12
[2025-07-26 07:12:12] Starting ATLAS job with PandaID=6745135691
[2025-07-26 07:12:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 07:15:56]  *** The last 200 lines of the pilot log: ***
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | WARNING  | wrong length of table data, x=[1753539178.0], y=[1005.0] (must be same and length>=4)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | could have reported an average CPU frequency of 2090 MHz (4 samples)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . Timing measurements:
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . get job = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . initial setup = 3 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . payload setup = 7 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . stage-in = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . payload execution = 25 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . stage-out = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . log creation = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745135691/pilotlog.txt
[2025-07-26 07:15:56] 2025-07-26 14:15:23,361 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 07:15:56] - Log from pilotlog.txt -
[2025-07-26 07:15:56] 2025-07-26 14:15:23,328 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 07:15:56] 2025-07-26 14:15:23,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | found no stored workdir sizes
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | WARNING  | wrong length of table data, x=[1753539178.0], y=[1005.0] (must be same and length>=4)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | could have reported an average CPU frequency of 2090 MHz (4 samples)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . Timing measurements:
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . get job = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . initial setup = 3 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . payload setup = 7 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . stage-in = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . payload execution = 25 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . stage-out = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . log creation = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745135691/pilotlog.txt
[2025-07-26 07:15:56] 2025-07-26 14:15:23,362 | WARNING  | 
[2025-07-26 07:15:56] [begin log extracts]
[2025-07-26 07:15:56] - Log from pilotlog.txt -
[2025-07-26 07:15:56] 2025-07-26 14:15:23,328 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 07:15:56] 2025-07-26 14:15:23,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | WARNING  | found no stored workdir sizes
[2025-07-26 07:15:56] 2025-07-26 14:15:23,329 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | WARNING  | wrong length of table data, x=[1753539178.0], y=[1005.0] (must be same and length>=4)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | could have reported an average CPU frequency of 2090 MHz (4 samples)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . Timing measurements:
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . get job = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . initial setup = 3 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . payload setup = 7 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,330 | INFO     | . stage-in = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . payload execution = 25 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . stage-out = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | . log creation = 0 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | ..............................
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 07:15:56] 2025-07-26 14:15:23,331 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745135691/pilotlog.txt
[2025-07-26 07:15:56] [end log extracts]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,362 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,363 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 07:15:56] 2025-07-26 14:15:23,644 | INFO     | 
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | job summary report
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | --------------------------------------------------
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | PanDA job id: 6745135691
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | task id: 45743349
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 07:13:12,530 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | pilot state: failed 
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | transexitcode: 65
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | exeerrorcode: 65
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | exitcode: 65
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | cpuconsumptiontime: 21 s
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | nevents: 0
[2025-07-26 07:15:56] 2025-07-26 14:15:23,645 | INFO     | neventsw: 0
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | pid: 2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | pgrp: 2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | corecount: 12
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | event service: False
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | sizes: {0: 2397245, 1: 2397500, 6: 2397762, 11: 2397790, 37: 2425369, 39: 2425369, 161: 2425663}
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | --------------------------------------------------
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | 
[2025-07-26 07:15:56] 2025-07-26 14:15:23,646 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-26 07:15:56] 2025-07-26 14:15:23,710 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,710 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,712 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,712 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,714 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 07:15:56] 2025-07-26 14:15:23,715 | INFO     | job 6745135691 has completed (purged errors)
[2025-07-26 07:15:56] 2025-07-26 14:15:23,715 | INFO     | overall cleanup function is called
[2025-07-26 07:15:56] 2025-07-26 14:15:24,009 | INFO     | PID=2356943 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 07:15:56] 2025-07-26 14:15:24,009 | INFO     | .. there are 35 such processes running
[2025-07-26 07:15:56] 2025-07-26 14:15:24,721 | INFO     | --- collectZombieJob: --- 10, [2363271]
[2025-07-26 07:15:56] 2025-07-26 14:15:24,721 | INFO     | zombie collector waiting for pid 2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:24,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 07:15:56] 2025-07-26 14:15:24,722 | INFO     | collected zombie processes
[2025-07-26 07:15:56] 2025-07-26 14:15:24,722 | INFO     | will attempt to kill all subprocesses of pid=2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:24,972 | INFO     | process IDs to be killed: [2363271] (in reverse order)
[2025-07-26 07:15:56] 2025-07-26 14:15:25,071 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 07:15:56] 2025-07-26 14:15:25,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 07:15:56] 2025-07-26 14:15:25,081 | INFO     | did not find any defunct processes belonging to 2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:25,090 | INFO     | did not find any defunct processes belonging to 2363271
[2025-07-26 07:15:56] 2025-07-26 14:15:25,091 | INFO     | ready for new job
[2025-07-26 07:15:56] 2025-07-26 14:15:25,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 07:15:56] 2025-07-26 14:15:25,093 | INFO     | ***************************************
[2025-07-26 07:15:56] 2025-07-26 14:15:25,093 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 07:15:56] 2025-07-26 14:15:25,093 | INFO     | ***************************************
[2025-07-26 07:15:56] 2025-07-26 14:15:25,093 | INFO     | 
[2025-07-26 07:15:56] 2025-07-26 14:15:25,096 | INFO     | architecture information:
[2025-07-26 07:15:56] 2025-07-26 14:15:25,097 | INFO     | executing command: cat /etc/os-release
[2025-07-26 07:15:56] 2025-07-26 14:15:25,112 | INFO     | cat /etc/os-release:
[2025-07-26 07:15:56] NAME="CentOS Linux"
[2025-07-26 07:15:56] VERSION="7 (Core)"
[2025-07-26 07:15:56] ID="centos"
[2025-07-26 07:15:56] ID_LIKE="rhel fedora"
[2025-07-26 07:15:56] VERSION_ID="7"
[2025-07-26 07:15:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 07:15:56] ANSI_COLOR="0;31"
[2025-07-26 07:15:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 07:15:56] HOME_URL="https://www.centos.org/"
[2025-07-26 07:15:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 07:15:56] 
[2025-07-26 07:15:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 07:15:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 07:15:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 07:15:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 07:15:56] 
[2025-07-26 07:15:56] 2025-07-26 14:15:25,112 | INFO     | ***************************************
[2025-07-26 07:15:56] 2025-07-26 14:15:25,615 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-26 07:15:56] 2025-07-26 14:15:25,630 | INFO     | sufficient remaining disk space (2082568404992 B)
[2025-07-26 07:15:56] 2025-07-26 14:15:25,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 07:15:56] 2025-07-26 14:15:25,631 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 07:15:56] 2025-07-26 14:15:25,631 | INFO     | update_server=False
[2025-07-26 07:15:56] 2025-07-26 14:15:25,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 07:15:56] 2025-07-26 14:15:25,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 07:15:56] 2025-07-26 14:15:25,633 | INFO     | aborting loop
[2025-07-26 07:15:56] 2025-07-26 14:15:25,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 07:15:56] 2025-07-26 14:15:25,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 07:15:56] 2025-07-26 14:15:26,099 | INFO     | all data control threads have been joined
[2025-07-26 07:15:56] 2025-07-26 14:15:26,636 | INFO     | [job] retrieve thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:26,639 | INFO     | [job] job monitor thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:26,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:26,978 | INFO     | all payload control threads have been joined
[2025-07-26 07:15:56] 2025-07-26 14:15:27,054 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,104 | INFO     | [data] control thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,155 | INFO     | all job control threads have been joined
[2025-07-26 07:15:56] 2025-07-26 14:15:27,596 | INFO     | [payload] failed_post thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,688 | INFO     | [data] copytool_in thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,740 | INFO     | [job] validate thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,906 | INFO     | [data] copytool_out thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,930 | INFO     | [payload] validate_post thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,938 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:27,982 | INFO     | [payload] control thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:28,085 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:28,161 | INFO     | [job] control thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:28,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 07:15:56] 2025-07-26 14:15:29,455 | INFO     | [job] queue monitor thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:29,640 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 07:15:56] 2025-07-26 14:15:30,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108156602176)>', '<ExcThread(monitor, started 140107378050816)>']
[2025-07-26 07:15:56] 2025-07-26 14:15:35,127 | INFO     | all workflow threads have been joined
[2025-07-26 07:15:56] 2025-07-26 14:15:35,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 07:15:56] 2025-07-26 14:15:35,128 | INFO     | traces error code: 0
[2025-07-26 07:15:56] 2025-07-26 14:15:35,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 07:15:56] 2025-07-26 14:15:56,434 | INFO     | PID=2356943 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 07:15:56] 2025-07-26 14:15:56,434 | INFO     | .. there are 35 such processes running
[2025-07-26 07:15:56] 2025-07-26 14:15:56,435 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 07:15:56] 2025-07-26 14:15:56,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 07:15:56] 2025-07-26 14:15:56,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 07:15:56] 2025-07-26 14:15:56,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 07:15:56] 2025-07-26 14:15:56,436 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 07:15:56] 2025-07-26 14:15:56,436 | INFO     | [monitor] control thread has ended
[2025-07-26 07:15:56] 2025-07-26 14:15:56,586 [wrapper] ==== pilot stdout END ====
[2025-07-26 07:15:56] 2025-07-26 14:15:56,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 07:15:56] 2025-07-26 14:15:56,595 [wrapper] pilotpid: 2356943
[2025-07-26 07:15:56] 2025-07-26 14:15:56,598 [wrapper] Pilot exit status: 0
[2025-07-26 07:15:56] 2025-07-26 14:15:56,615 [wrapper] pandaids: 6745135691
[2025-07-26 07:15:56] 2025-07-26 14:15:56,680 [wrapper] cleanup supervisor_pilot 2356949 2356944
[2025-07-26 07:15:56] 2025-07-26 14:15:56,684 [wrapper] Test setup, not cleaning
[2025-07-26 07:15:56] 2025-07-26 14:15:56,689 [wrapper] apfmon messages muted
[2025-07-26 07:15:56] 2025-07-26 14:15:56,694 [wrapper] ==== wrapper stdout END ====
[2025-07-26 07:15:56] 2025-07-26 14:15:56,699 [wrapper] ==== wrapper stderr END ====
[2025-07-26 07:15:56]  *** Error codes and diagnostics ***
[2025-07-26 07:15:56]     "exeErrorCode": 65,
[2025-07-26 07:15:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 07:15:56]     "pilotErrorCode": 1305,
[2025-07-26 07:15:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 07:15:56]  *** Listing of results directory ***
[2025-07-26 07:15:56] total 147240
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc      5112 Jul 26 04:38 queuedata.json
[2025-07-26 07:15:56] -rwx------. 1 boinc boinc     36292 Jul 26 04:39 runpilot2-wrapper.sh
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc    530466 Jul 26 04:39 pilot3.tar.gz
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc       100 Jul 26 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 07:15:56] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 07:12 run_atlas
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc       105 Jul 26 07:12 job.xml
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc      6591 Jul 26 07:12 init_data.xml
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc 146704721 Jul 26 07:12 EVNT.45743347._002129.pool.root.1
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc     15095 Jul 26 07:12 start_atlas.sh
[2025-07-26 07:15:56] drwxrwx--x. 2 boinc boinc      4096 Jul 26 07:12 shared
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc    542894 Jul 26 07:12 input.tar.gz
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc         0 Jul 26 07:12 boinc_lockfile
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc      2563 Jul 26 07:12 pandaJob.out
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc    980133 Jul 26 07:12 agis_schedconf.cvmfs.json
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc   1593052 Jul 26 07:12 agis_ddmendpoints.agis.ALL.json
[2025-07-26 07:15:56] drwx------. 4 boinc boinc      4096 Jul 26 07:12 pilot3
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc       522 Jul 26 07:13 boinc_task_state.xml
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc       988 Jul 26 07:13 memory_monitor_summary.json
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc     19928 Jul 26 07:13 log.45743349._037276.job.log.tgz.1
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc      8420 Jul 26 07:15 heartbeat.json
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc      8192 Jul 26 07:15 boinc_mmap_file
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc        22 Jul 26 07:15 wrapper_checkpoint.txt
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc        95 Jul 26 07:15 pilot_heartbeat.json
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc       893 Jul 26 07:15 pilotlog.txt
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc     75832 Jul 26 07:15 log.45743349._037276.job.log.1
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc       188 Jul 26 07:15 output.list
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc       620 Jul 26 07:15 runtime_log
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc    112640 Jul 26 07:15 result.tar.gz
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc      8485 Jul 26 07:15 runtime_log.err
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc       647 Jul 26 07:15 qGCODmnQsz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmt1RLDmVDeyIo.diag
[2025-07-26 07:15:56] -rw-r--r--. 1 boinc boinc     21761 Jul 26 07:15 stderr.txt
[2025-07-26 07:15:56] No HITS result produced
[2025-07-26 07:15:56]  *** Contents of shared directory: ***
[2025-07-26 07:15:56] total 143932
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc 146704721 Jul 26 07:12 ATLAS.root_0
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc     15095 Jul 26 07:12 start_atlas.sh
[2025-07-26 07:15:56] -rw-r--r--. 2 boinc boinc    542894 Jul 26 07:12 input.tar.gz
[2025-07-26 07:15:56] -rw-------. 1 boinc boinc    112640 Jul 26 07:15 result.tar.gz
07:15:57 (2353376): run_atlas exited; CPU time 25.302475
07:15:57 (2353376): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN