Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 01:02:49 (15806): Detected: vboxwrapper 26206
2025-07-27 01:02:49 (15806): Detected: BOINC client v8.2.5
2025-07-27 01:02:49 (15806): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-07-27 01:02:49 (15806): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 01:02:49 (15806): Create VM. (boinc_539a6d1471451dd6, slot#1)
2025-07-27 01:02:49 (15806): Setting Memory Size for VM. (4800MB)
2025-07-27 01:02:49 (15806): Setting CPU Count for VM. (8)
2025-07-27 01:02:49 (15806): Setting Chipset Options for VM.
2025-07-27 01:02:49 (15806): Setting Graphics Controller Options for VM.
2025-07-27 01:02:50 (15806): Setting Boot Options for VM.
2025-07-27 01:02:50 (15806): Setting Network Configuration for NAT.
2025-07-27 01:02:50 (15806): Enabling VM Network Access.
2025-07-27 01:02:50 (15806): Disabling USB Support for VM.
2025-07-27 01:02:50 (15806): Disabling COM Port Support for VM.
2025-07-27 01:02:50 (15806): Disabling LPT Port Support for VM.
2025-07-27 01:02:50 (15806): Disabling Audio Support for VM.
2025-07-27 01:02:50 (15806): Disabling Clipboard Support for VM.
2025-07-27 01:02:50 (15806): Disabling Drag and Drop Support for VM.
2025-07-27 01:02:50 (15806): Adding storage controller(s) to VM.
2025-07-27 01:02:50 (15806): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 01:02:51 (15806): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 01:02:51 (15806): forwarding host port 45653 to guest port 80
2025-07-27 01:02:51 (15806): Enabling remote desktop for VM.
2025-07-27 01:02:51 (15806): Required extension pack not installed, remote desktop not enabled.
2025-07-27 01:02:51 (15806): Enabling shared directory for VM.
2025-07-27 01:02:51 (15806): Starting VM using VBoxManage interface. (boinc_539a6d1471451dd6, slot#1)
2025-07-27 01:02:52 (15806): Successfully started VM. (PID = '16182')
2025-07-27 01:02:52 (15806): Reporting VM Process ID to BOINC.
2025-07-27 01:02:52 (15806): Guest Log: BIOS: VirtualBox 7.0.16
2025-07-27 01:02:52 (15806): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 01:02:52 (15806): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 01:02:52 (15806): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 01:02:52 (15806): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 01:02:52 (15806): Detected: Web Application Enabled (http://localhost:45653)
2025-07-27 01:02:52 (15806): Preference change detected
2025-07-27 01:02:52 (15806): Setting CPU throttle for VM. (100%)
2025-07-27 01:02:52 (15806): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 01:02:54 (15806): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 01:02:54 (15806): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 01:02:57 (15806): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 01:02:57 (15806): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 01:02:57 (15806): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 01:03:06 (15806): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 01:03:06 (15806): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 01:03:14 (15806): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000180 main     Log opened 2025-07-26T23:03:11.970546000Z
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000312 main     OS Product: Linux
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000373 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000409 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000443 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000444 main     Process ID: 1365
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.000445 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 01:03:14 (15806): Guest Log: 00:00:00.002951 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 01:03:14 (15806): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 01:03:14 (15806): Guest Log: [INFO] Mounting shared directory
2025-07-27 01:03:14 (15806): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 01:04:14 (15806): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 01:04:14 (15806): Guest Log: [INFO] Detected branch: prod
2025-07-27 01:04:14 (15806): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 01:04:14 (15806): Guest Log: Copying input files
2025-07-27 01:04:15 (15806): Guest Log: Copied input files into RunAtlas.
2025-07-27 01:04:15 (15806): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 01:04:15 (15806): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 01:04:15 (15806): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 01:04:15 (15806): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 01:04:24 (15806): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 01:04:24 (15806): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 01:04:24 (15806): Guest Log: 2.6.3.0 1665 0 32196 148792 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 01:04:25 (15806): Guest Log: copied the webapp to /var/www
2025-07-27 01:04:25 (15806): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-27 01:04:25 (15806): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-27 01:04:25 (15806): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 01:04:25 (15806): Guest Log:  *** Starting ATLAS job. (PandaID=6745101050 taskID=45743349) ***
2025-07-27 02:41:53 (15806): Status Report: Elapsed Time: '6000.000000'
2025-07-27 02:41:53 (15806): Status Report: CPU Time: '42666.690000'
2025-07-27 03:18:46 (15806): Guest Log:  *** Job finished ***
2025-07-27 03:18:46 (15806): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:33,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:33,282 | INFO     | [data] copytool_out thread has finished
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:37,221 | INFO     | [data] queue_monitor thread has finished
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:38,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140133312698176)>', '<ExcThread(monitor, started 140132862633728)>']
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:38,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:38,546 | INFO     | [monitor] control thread has ended
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,443 | INFO     | all workflow threads have been joined
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,444 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,444 | INFO     | traces error code: 0
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,541 [wrapper] ==== pilot stdout END ====
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,548 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,555 [wrapper] pilotpid: 6014
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,562 [wrapper] Pilot exit status: 0
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,631 [wrapper] pandaids: 6745101050
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,678 [wrapper] cleanup supervisor_pilot  5209 6015
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,684 [wrapper] Test setup, not cleaning
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,691 [wrapper] apfmon messages muted
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,699 [wrapper] ==== wrapper stdout END ====
2025-07-27 03:18:46 (15806): Guest Log: 2025-07-27 01:18:43,705 [wrapper] ==== wrapper stderr END ====
2025-07-27 03:18:46 (15806): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 03:18:46 (15806): Guest Log:     "exeErrorCode": 0,
2025-07-27 03:18:46 (15806): Guest Log:     "exeErrorDiag": "",
2025-07-27 03:18:46 (15806): Guest Log:     "pilotErrorCode": 0,
2025-07-27 03:18:46 (15806): Guest Log:     "pilotErrorDiag": "",
2025-07-27 03:18:46 (15806): Guest Log:  *** Listing of results directory ***
2025-07-27 03:18:46 (15806): Guest Log: total 210772
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 08:04 pilot3.tar.gz
2025-07-27 03:18:46 (15806): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 08:26 runpilot2-wrapper.sh
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 08:26 queuedata.json
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas    542893 Jul 26 23:04 input.tar.gz
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 26 23:04 start_atlas.sh
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas      8865 Jul 26 23:04 init_data.xml
2025-07-27 03:18:46 (15806): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 23:04 EVNT.45743347._001980.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 26 23:04 pandaJob.out
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 26 23:05 agis_schedconf.cvmfs.json
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 23:05 agis_ddmendpoints.agis.ALL.json
2025-07-27 03:18:46 (15806): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 23:05 pilot3
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas 210032252 Jul 27 01:17 HITS.45743349._034897.pool.root.1
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 01:17 pilot_heartbeat.json
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas      1029 Jul 27 01:18 memory_monitor_summary.json
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas    321576 Jul 27 01:18 log.45743349._034897.job.log.tgz.1
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas      7824 Jul 27 01:18 heartbeat.json
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 27 01:18 pilotlog.txt
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas    669128 Jul 27 01:18 log.45743349._034897.job.log.1
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 01:18 output.list
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 01:18 runtime_log
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas   1013760 Jul 27 01:18 result.tar.gz
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 atlas atlas      8572 Jul 27 01:18 runtime_log.err
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas       647 Jul 27 01:18 cOMLDmiPpz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYdRLDmxLdz1n.diag
2025-07-27 03:18:46 (15806): Guest Log: Looking for outputfile HITS.45743349._034897.pool.root.1
2025-07-27 03:18:46 (15806): Guest Log: HITS file was successfully produced
2025-07-27 03:18:46 (15806): Guest Log: -rw-------. 1 atlas atlas 210032252 Jul 27 01:17 /home/atlas/RunAtlas/HITS.45743349._034897.pool.root.1
2025-07-27 03:18:46 (15806): Guest Log: Successfully finished the ATLAS job!
2025-07-27 03:18:46 (15806): Guest Log: Copying the results back to the shared directory!
2025-07-27 03:18:46 (15806): Guest Log:  *** Contents of shared directory: ***
2025-07-27 03:18:46 (15806): Guest Log: total 146596
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 root root 148518322 Jul 26 23:02 ATLAS.root_0
2025-07-27 03:18:46 (15806): Guest Log: -rw-rw-r--. 1 root root      8865 Jul 26 23:02 init_data.xml
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 root root    542893 Jul 26 23:02 input.tar.gz
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 root root   1013760 Jul 27 01:18 result.tar.gz
2025-07-27 03:18:46 (15806): Guest Log: -rw-r--r--. 1 root root     15095 Jul 26 23:02 start_atlas.sh
2025-07-27 03:18:46 (15806): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 03:18:46 (15806): VM Completion File Detected.
2025-07-27 03:18:46 (15806): Powering off VM.
2025-07-27 03:18:46 (15806): Successfully stopped VM.
2025-07-27 03:18:46 (15806): Deregistering VM. (boinc_539a6d1471451dd6, slot#1)
2025-07-27 03:18:46 (15806): Removing network bandwidth throttle group from VM.
2025-07-27 03:18:46 (15806): Removing VM from VirtualBox.
03:18:51 (15806): called boinc_finish(0)

</stderr_txt>
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