Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:00:46 (25412): wrapper (7.7.26015): starting
10:00:46 (25412): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 10:00:46] Arguments: --nthreads 12
[2025-07-26 10:00:46] Threads: 12
[2025-07-26 10:00:46] Checking for CVMFS
[2025-07-26 10:00:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 10:00:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 10:00:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 10:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 10:00:47] 2.11.2.0 3035 110608 98088 148778 3 57 14811945 20275201 1 130560 0 36669448 99.970 10087309 11086 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 10:00:47] CVMFS is ok
[2025-07-26 10:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 10:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 10:00:47] Further information can be found at the LHC@home message board.
[2025-07-26 10:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 10:00:47] Checking for apptainer binary...
[2025-07-26 10:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 10:00:47] Running /usr/bin/apptainer --version
[2025-07-26 10:00:47] apptainer version 1.3.2-1.el7
[2025-07-26 10:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 10:00:48] c-205-31.aglt2.org
[2025-07-26 10:00:48] apptainer works
[2025-07-26 10:00:48] Set ATHENA_PROC_NUMBER=12
[2025-07-26 10:00:48] Set ATHENA_CORE_NUMBER=12
[2025-07-26 10:00:48] Starting ATLAS job with PandaID=6744844398
[2025-07-26 10:00:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 11:23:11]  *** The last 200 lines of the pilot log: ***
[2025-07-26 11:23:11]  lfn=log.45743349._003820.job.log.tgz.1
[2025-07-26 11:23:11]  mtime=0
[2025-07-26 11:23:11]  protocol_id=None
[2025-07-26 11:23:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 11:23:11]  replicas=None
[2025-07-26 11:23:11]  scope=mc23_13p6TeV
[2025-07-26 11:23:11]  status=None
[2025-07-26 11:23:11]  status_code=0
[2025-07-26 11:23:11]  storage_token=
[2025-07-26 11:23:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744844398/log.45743349._003820.job.log.tgz.1
[2025-07-26 11:23:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/d4/log.45743349._003820.job.log.tgz.1
[2025-07-26 11:23:11]  workdir=None
[2025-07-26 11:23:11] ]
[2025-07-26 11:23:11] 2025-07-26 15:22:29,258 | INFO     | transferring file log.45743349._003820.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744844398/log.45743349._003820.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 11:23:11] 2025-07-26 15:22:29,259 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744844398/log.45743349._003820.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._003820.job
[2025-07-26 11:23:11] 2025-07-26 15:22:29,282 | INFO     | adding to output.list: log.45743349._003820.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/d4/log.45743349._003820.job.log.tg
[2025-07-26 11:23:11] 2025-07-26 15:22:29,283 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 11:23:11] 2025-07-26 15:22:29,284 | INFO     | summary of transferred files:
[2025-07-26 11:23:11] 2025-07-26 15:22:29,284 | INFO     |  -- lfn=log.45743349._003820.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 11:23:11] 2025-07-26 15:22:29,284 | INFO     | stage-out finished correctly
[2025-07-26 11:23:11] 2025-07-26 15:22:31,582 | INFO     | monitor loop #366: job 0:6744844398 is in state 'finished'
[2025-07-26 11:23:11] 2025-07-26 15:22:31,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:23:11] 2025-07-26 15:22:32,871 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 11:23:11] 2025-07-26 15:22:33,446 | INFO     | job 6744844398 has state=finished
[2025-07-26 11:23:11] 2025-07-26 15:22:33,446 | INFO     | preparing for final server update for job 6744844398 in state='finished'
[2025-07-26 11:23:11] 2025-07-26 15:22:33,447 | INFO     | this job has now completed (state=finished)
[2025-07-26 11:23:11] 2025-07-26 15:22:33,447 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 11:23:11] 2025-07-26 15:22:33,447 | INFO     | log transfer has been attempted: DONE
[2025-07-26 11:23:11] 2025-07-26 15:22:33,447 | INFO     | job 6744844398 has finished - writing final server update
[2025-07-26 11:23:11] 2025-07-26 15:22:33,448 | INFO     | total number of processed events: 400 (read)
[2025-07-26 11:23:11] 2025-07-26 15:22:33,449 | INFO     | executing command: lscpu
[2025-07-26 11:23:11] 2025-07-26 15:22:33,476 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 11:23:11] 2025-07-26 15:22:34,085 | INFO     | monitor loop #367: job 0:6744844398 is in state 'finished'
[2025-07-26 11:23:11] 2025-07-26 15:22:34,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:23:11] 2025-07-26 15:22:36,604 | INFO     | monitor loop #368: job 0:6744844398 is in state 'finished'
[2025-07-26 11:23:11] 2025-07-26 15:22:36,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,539 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 11:23:11] 2025-07-26 15:22:38,543 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,545 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744844398/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,546 | INFO     | extracted standard info from prmon json
[2025-07-26 11:23:11] 2025-07-26 15:22:38,546 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:23:11] 2025-07-26 15:22:38,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:23:11] 2025-07-26 15:22:38,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:23:11] 2025-07-26 15:22:38,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:23:11] 2025-07-26 15:22:38,548 | INFO     | fitting pss+swap vs Time
[2025-07-26 11:23:11] 2025-07-26 15:22:38,548 | INFO     | sum of square deviations: 120605052.0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | sum of deviations: 382763532.0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | mean x: 1753540994.0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | mean y: 2675842.7534246575
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | -- intersect: -5562526719.16107
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | intersect: -5562526719.16107
[2025-07-26 11:23:11] 2025-07-26 15:22:38,549 | INFO     | chi2: 0.013126702512252338
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | -- intersect: -5562526719.16107
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | current memory leak: 3.17 B/s (using 73 data points, chi2=0.01)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | ..............................
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | . Timing measurements:
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | . get job = 0 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | . initial setup = 2 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,550 | INFO     | . payload setup = 9 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,551 | INFO     | . stage-in = 0 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,551 | INFO     | . payload execution = 4855 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,551 | INFO     | . stage-out = 0 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,551 | INFO     | . log creation = 0 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,551 | INFO     | ..............................
[2025-07-26 11:23:11] 2025-07-26 15:22:38,634 | INFO     | 
[2025-07-26 11:23:11] 2025-07-26 15:22:38,634 | INFO     | job summary report
[2025-07-26 11:23:11] 2025-07-26 15:22:38,634 | INFO     | --------------------------------------------------
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | PanDA job id: 6744844398
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | task id: 45743349
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | errors: (none)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | pilot state: finished 
[2025-07-26 11:23:11] 2025-07-26 15:22:38,635 | INFO     | transexitcode: 0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | exeerrorcode: 0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | exeerrordiag: 
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | exitcode: 0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | exitmsg: OK
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | cpuconsumptiontime: 53448 s
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | nevents: 400
[2025-07-26 11:23:11] 2025-07-26 15:22:38,636 | INFO     | neventsw: 0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | pid: 3192
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | pgrp: 3192
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | corecount: 12
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | event service: False
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | sizes: {0: 2397297, 1: 2397496, 5: 2397758, 11: 2397814, 4869: 2424164, 4871: 2433162, 4875: 2433346, 4881: 2433540}
[2025-07-26 11:23:11] 2025-07-26 15:22:38,637 | INFO     | --------------------------------------------------
[2025-07-26 11:23:11] 2025-07-26 15:22:38,638 | INFO     | 
[2025-07-26 11:23:11] 2025-07-26 15:22:38,638 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 11:23:11] 2025-07-26 15:22:38,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,663 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,663 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,663 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 11:23:11] 2025-07-26 15:22:38,665 | INFO     | job 6744844398 has completed (purged errors)
[2025-07-26 11:23:11] 2025-07-26 15:22:38,666 | INFO     | overall cleanup function is called
[2025-07-26 11:23:11] 2025-07-26 15:22:39,673 | INFO     | --- collectZombieJob: --- 10, [3192]
[2025-07-26 11:23:11] 2025-07-26 15:22:39,673 | INFO     | zombie collector waiting for pid 3192
[2025-07-26 11:23:11] 2025-07-26 15:22:39,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 11:23:11] 2025-07-26 15:22:39,673 | INFO     | collected zombie processes
[2025-07-26 11:23:11] 2025-07-26 15:22:39,673 | INFO     | will attempt to kill all subprocesses of pid=3192
[2025-07-26 11:23:11] 2025-07-26 15:22:39,760 | INFO     | process IDs to be killed: [3192] (in reverse order)
[2025-07-26 11:23:11] 2025-07-26 15:22:39,817 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 11:23:11] 2025-07-26 15:22:39,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 11:23:11] 2025-07-26 15:22:39,821 | INFO     | did not find any defunct processes belonging to 3192
[2025-07-26 11:23:11] 2025-07-26 15:22:39,824 | INFO     | did not find any defunct processes belonging to 3192
[2025-07-26 11:23:11] 2025-07-26 15:22:39,825 | INFO     | ready for new job
[2025-07-26 11:23:11] 2025-07-26 15:22:39,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 11:23:11] 2025-07-26 15:22:39,826 | INFO     | ***************************************
[2025-07-26 11:23:11] 2025-07-26 15:22:39,826 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 11:23:11] 2025-07-26 15:22:39,826 | INFO     | ***************************************
[2025-07-26 11:23:11] 2025-07-26 15:22:39,826 | INFO     | 
[2025-07-26 11:23:11] 2025-07-26 15:22:39,827 | INFO     | architecture information:
[2025-07-26 11:23:11] 2025-07-26 15:22:39,827 | INFO     | executing command: cat /etc/os-release
[2025-07-26 11:23:11] 2025-07-26 15:22:39,841 | INFO     | cat /etc/os-release:
[2025-07-26 11:23:11] NAME="CentOS Linux"
[2025-07-26 11:23:11] VERSION="7 (Core)"
[2025-07-26 11:23:11] ID="centos"
[2025-07-26 11:23:11] ID_LIKE="rhel fedora"
[2025-07-26 11:23:11] VERSION_ID="7"
[2025-07-26 11:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 11:23:11] ANSI_COLOR="0;31"
[2025-07-26 11:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 11:23:11] HOME_URL="https://www.centos.org/"
[2025-07-26 11:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 11:23:11] 
[2025-07-26 11:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 11:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 11:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 11:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 11:23:11] 
[2025-07-26 11:23:11] 2025-07-26 15:22:39,842 | INFO     | ***************************************
[2025-07-26 11:23:11] 2025-07-26 15:22:40,343 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 11:23:11] 2025-07-26 15:22:40,361 | INFO     | sufficient remaining disk space (29521608704 B)
[2025-07-26 11:23:11] 2025-07-26 15:22:40,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 11:23:11] 2025-07-26 15:22:40,362 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 11:23:11] 2025-07-26 15:22:40,362 | INFO     | update_server=False
[2025-07-26 11:23:11] 2025-07-26 15:22:40,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 11:23:11] 2025-07-26 15:22:40,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 11:23:11] 2025-07-26 15:22:40,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:23:11] 2025-07-26 15:22:40,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:23:11] 2025-07-26 15:22:40,364 | INFO     | aborting loop
[2025-07-26 11:23:11] 2025-07-26 15:22:40,650 | INFO     | all data control threads have been joined
[2025-07-26 11:23:11] 2025-07-26 15:22:40,710 | INFO     | all job control threads have been joined
[2025-07-26 11:23:11] 2025-07-26 15:22:40,891 | INFO     | all payload control threads have been joined
[2025-07-26 11:23:11] 2025-07-26 15:22:41,368 | INFO     | [job] retrieve thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,369 | INFO     | [job] queue monitor thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,369 | INFO     | [job] job monitor thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,535 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,582 | INFO     | [data] copytool_in thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,656 | INFO     | [data] control thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,711 | INFO     | [job] control thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,896 | INFO     | [payload] control thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:41,976 | INFO     | [payload] failed_post thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:42,368 | INFO     | [data] copytool_out thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:42,517 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:42,571 | INFO     | [payload] validate_post thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:42,747 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:42,752 | INFO     | [job] validate thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:43,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 11:23:11] 2025-07-26 15:22:47,470 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:50,809 | INFO     | job.realtimelogging is not enabled
[2025-07-26 11:23:11] 2025-07-26 15:22:51,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 11:23:11] 2025-07-26 15:22:52,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638283491136)>', '<ExcThread(monitor, started 140637454182144)>']
[2025-07-26 11:23:11] 2025-07-26 15:22:57,396 | INFO     | all workflow threads have been joined
[2025-07-26 11:23:11] 2025-07-26 15:22:57,405 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 11:23:11] 2025-07-26 15:22:57,405 | INFO     | traces error code: 0
[2025-07-26 11:23:11] 2025-07-26 15:22:57,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 11:23:11] 2025-07-26 15:23:11,293 | INFO     | PID=29005 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 11:23:11] 2025-07-26 15:23:11,294 | INFO     | [monitor] control thread has ended
[2025-07-26 11:23:11] 2025-07-26 15:23:11,387 [wrapper] ==== pilot stdout END ====
[2025-07-26 11:23:11] 2025-07-26 15:23:11,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 11:23:11] 2025-07-26 15:23:11,394 [wrapper] pilotpid: 29005
[2025-07-26 11:23:11] 2025-07-26 15:23:11,398 [wrapper] Pilot exit status: 0
[2025-07-26 11:23:11] 2025-07-26 15:23:11,414 [wrapper] pandaids: 6744844398
[2025-07-26 11:23:11] 2025-07-26 15:23:11,459 [wrapper] cleanup supervisor_pilot 10971 29006
[2025-07-26 11:23:11] 2025-07-26 15:23:11,463 [wrapper] Test setup, not cleaning
[2025-07-26 11:23:11] 2025-07-26 15:23:11,475 [wrapper] apfmon messages muted
[2025-07-26 11:23:11] 2025-07-26 15:23:11,479 [wrapper] ==== wrapper stdout END ====
[2025-07-26 11:23:11] 2025-07-26 15:23:11,483 [wrapper] ==== wrapper stderr END ====
[2025-07-26 11:23:11]  *** Error codes and diagnostics ***
[2025-07-26 11:23:11]     "exeErrorCode": 0,
[2025-07-26 11:23:11]     "exeErrorDiag": "",
[2025-07-26 11:23:11]     "pilotErrorCode": 0,
[2025-07-26 11:23:11]     "pilotErrorDiag": "",
[2025-07-26 11:23:11]  *** Listing of results directory ***
[2025-07-26 11:23:11] total 347656
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 13:03 pilot3.tar.gz
[2025-07-26 11:23:11] -rwx------ 1 boincer umatlas     36292 Jul 24 13:22 runpilot2-wrapper.sh
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 13:23 queuedata.json
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas       100 Jul 26 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 11:23:11] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 10:00 run_atlas
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas       105 Jul 26 10:00 job.xml
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas 144871536 Jul 26 10:00 EVNT.45743347._000218.pool.root.1
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 10:00 start_atlas.sh
[2025-07-26 11:23:11] drwxrwx--x 2 boincer umatlas      4096 Jul 26 10:00 shared
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas    542879 Jul 26 10:00 input.tar.gz
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas         0 Jul 26 10:00 boinc_lockfile
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas      2559 Jul 26 10:00 pandaJob.out
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas    980133 Jul 26 10:00 agis_schedconf.cvmfs.json
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas   1593052 Jul 26 10:01 agis_ddmendpoints.agis.ALL.json
[2025-07-26 11:23:11] drwx------ 4 boincer umatlas      4096 Jul 26 10:01 pilot3
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas      5868 Jul 26 11:20 init_data.xml
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas 205612767 Jul 26 11:21 HITS.45743349._003820.pool.root.1
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas       529 Jul 26 11:22 boinc_task_state.xml
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas      1045 Jul 26 11:22 memory_monitor_summary.json
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas    359176 Jul 26 11:22 log.45743349._003820.job.log.tgz.1
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas      7840 Jul 26 11:22 heartbeat.json
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas        27 Jul 26 11:23 wrapper_checkpoint.txt
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 11:23 boinc_mmap_file
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas       815 Jul 26 11:23 pilotlog.txt
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas        95 Jul 26 11:23 pilot_heartbeat.json
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas    465379 Jul 26 11:23 log.45743349._003820.job.log.1
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas       357 Jul 26 11:23 output.list
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas       620 Jul 26 11:23 runtime_log
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas    839680 Jul 26 11:23 result.tar.gz
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas      8662 Jul 26 11:23 runtime_log.err
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas       659 Jul 26 11:23 neZKDm1oEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrmMLDmQ0HoNn.diag
[2025-07-26 11:23:11] -rw-r--r-- 1 boincer umatlas     21605 Jul 26 11:23 stderr.txt
[2025-07-26 11:23:11] HITS file was successfully produced:
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas 205612767 Jul 26 11:21 shared/HITS.pool.root.1
[2025-07-26 11:23:11]  *** Contents of shared directory: ***
[2025-07-26 11:23:11] total 343644
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas 144871536 Jul 26 10:00 ATLAS.root_0
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 10:00 start_atlas.sh
[2025-07-26 11:23:11] -rw-r--r-- 2 boincer umatlas    542879 Jul 26 10:00 input.tar.gz
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas 205612767 Jul 26 11:21 HITS.pool.root.1
[2025-07-26 11:23:11] -rw------- 1 boincer umatlas    839680 Jul 26 11:23 result.tar.gz
11:23:13 (25412): run_atlas exited; CPU time 53429.270440
11:23:13 (25412): called boinc_finish(0)

</stderr_txt>
]]>

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