Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 08:57:26 (13716): Detected: vboxwrapper 26206
2025-07-26 08:57:26 (13716): Detected: BOINC client v8.2.4
2025-07-26 08:57:27 (13716): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-07-26 08:57:28 (13716): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 08:57:28 (13716): Create VM. (boinc_a7fe0b77e56ae249, slot#1)
2025-07-26 08:57:29 (13716): Setting Memory Size for VM. (4400MB)
2025-07-26 08:57:29 (13716): Setting CPU Count for VM. (4)
2025-07-26 08:57:29 (13716): Setting Chipset Options for VM.
2025-07-26 08:57:29 (13716): Setting Graphics Controller Options for VM.
2025-07-26 08:57:30 (13716): Setting Boot Options for VM.
2025-07-26 08:57:30 (13716): Setting Network Configuration for NAT.
2025-07-26 08:57:30 (13716): Enabling VM Network Access.
2025-07-26 08:57:30 (13716): Disabling USB Support for VM.
2025-07-26 08:57:31 (13716): Disabling COM Port Support for VM.
2025-07-26 08:57:31 (13716): Disabling LPT Port Support for VM.
2025-07-26 08:57:31 (13716): Disabling Audio Support for VM.
2025-07-26 08:57:32 (13716): Disabling Clipboard Support for VM.
2025-07-26 08:57:32 (13716): Disabling Drag and Drop Support for VM.
2025-07-26 08:57:32 (13716): Adding storage controller(s) to VM.
2025-07-26 08:57:32 (13716): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 08:57:35 (13716): Adding VirtualBox Guest Additions to VM.
2025-07-26 08:57:36 (13716): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 08:57:36 (13716): forwarding host port 52119 to guest port 80
2025-07-26 08:57:36 (13716): Enabling remote desktop for VM.
2025-07-26 08:57:36 (13716): Required extension pack not installed, remote desktop not enabled.
2025-07-26 08:57:36 (13716): Enabling shared directory for VM.
2025-07-26 08:57:37 (13716): Starting VM using VBoxManage interface. (boinc_a7fe0b77e56ae249, slot#1)
2025-07-26 08:57:43 (13716): Successfully started VM. (PID = '24836')
2025-07-26 08:57:43 (13716): Reporting VM Process ID to BOINC.
2025-07-26 08:57:43 (13716): Guest Log: BIOS: VirtualBox 7.1.4
2025-07-26 08:57:43 (13716): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 08:57:43 (13716): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 08:57:43 (13716): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 08:57:43 (13716): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 08:57:43 (13716): Detected: Web Application Enabled (http://localhost:52119)
2025-07-26 08:57:43 (13716): Preference change detected
2025-07-26 08:57:43 (13716): Setting CPU throttle for VM. (90%)
2025-07-26 08:57:43 (13716): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 08:57:45 (13716): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 08:57:45 (13716): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 08:57:48 (13716): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 08:57:48 (13716): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 08:57:48 (13716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 08:57:54 (13716): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 08:57:54 (13716): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 08:57:58 (13716): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000110 main     Log opened 2025-07-26T08:57:56.195637000Z
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000260 main     OS Product: Linux
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000301 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000321 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000381 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000382 main     Process ID: 1307
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.000382 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 08:57:58 (13716): Guest Log: 00:00:00.001429 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 08:57:58 (13716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 08:57:58 (13716): Guest Log: [INFO] Mounting shared directory
2025-07-26 08:57:58 (13716): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 08:58:03 (13716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 08:58:03 (13716): Guest Log: [INFO] Detected branch: prod
2025-07-26 08:58:03 (13716): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 08:58:03 (13716): Guest Log: Copying input files
2025-07-26 08:58:04 (13716): Guest Log: Copied input files into RunAtlas.
2025-07-26 08:58:04 (13716): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 08:58:04 (13716): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 08:58:04 (13716): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 08:58:04 (13716): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 08:58:08 (13716): Guest Log: 00:00:10.004498 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 891 816 000ns (GuestNow=1 753 534 688 090 408 000 ns GuestLast=1 753 520 276 198 592 000 ns fSetTimeLastLoop=true )
2025-07-26 08:58:13 (13716): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 08:58:13 (13716): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 08:58:13 (13716): Guest Log: 2.6.3.0 1585 0 32172 148777 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 08:58:14 (13716): Guest Log: copied the webapp to /var/www
2025-07-26 08:58:14 (13716): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-26 08:58:14 (13716): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-26 08:58:14 (13716): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 08:58:14 (13716): Guest Log:  *** Starting ATLAS job. (PandaID=6745099328 taskID=45743349) ***
2025-07-26 08:58:30 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 08:58:50 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 08:59:40 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 09:00:00 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 09:09:31 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 09:09:51 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 09:10:21 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 09:10:42 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 09:13:22 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 09:13:42 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 09:16:42 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 09:17:02 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 10:13:46 (13716): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 10:14:06 (13716): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 10:40:16 (13716): Status Report: Elapsed Time: '6000.000000'
2025-07-26 10:40:16 (13716): Status Report: CPU Time: '20436.593750'
2025-07-26 10:42:07 (13716): Guest Log:  *** Job finished ***
2025-07-26 10:42:07 (13716): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:36,046 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:36,047 | INFO     | traces error code: 0
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:36,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,095 | INFO     | PID=5905 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | INFO     | found 0 job(s) in 20 queues
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | CRITICAL | thread 'MainThread' is not alive
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,096 | INFO     | [monitor] control thread has ended
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,139 [wrapper] ==== pilot stdout END ====
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,143 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,146 [wrapper] pilotpid: 5905
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,148 [wrapper] Pilot exit status: 0
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,293 [wrapper] pandaids: 6745099328
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,321 [wrapper] cleanup supervisor_pilot  2042 5906
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,323 [wrapper] Test setup, not cleaning
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,326 [wrapper] apfmon messages muted
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,328 [wrapper] ==== wrapper stdout END ====
2025-07-26 10:42:07 (13716): Guest Log: 2025-07-26 14:39:48,331 [wrapper] ==== wrapper stderr END ====
2025-07-26 10:42:07 (13716): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 10:42:07 (13716): Guest Log:     "exeErrorCode": 0,
2025-07-26 10:42:07 (13716): Guest Log:     "exeErrorDiag": "",
2025-07-26 10:42:07 (13716): Guest Log:     "pilotErrorCode": 0,
2025-07-26 10:42:07 (13716): Guest Log:     "pilotErrorDiag": "",
2025-07-26 10:42:07 (13716): Guest Log:  *** Listing of results directory ***
2025-07-26 10:42:07 (13716): Guest Log: total 202148
2025-07-26 10:42:07 (13716): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 07:16 pilot3.tar.gz
2025-07-26 10:42:07 (13716): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 07:24 queuedata.json
2025-07-26 10:42:07 (13716): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 07:24 runpilot2-wrapper.sh
2025-07-26 10:42:07 (13716): Guest Log: -rwxr-xr-x. 1 atlas atlas     11783 Jul 26 12:58 init_data.xml
2025-07-26 10:42:07 (13716): Guest Log: -rwxr-xr-x. 1 atlas atlas    542896 Jul 26 12:58 input.tar.gz
2025-07-26 10:42:07 (13716): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 12:58 start_atlas.sh
2025-07-26 10:42:07 (13716): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 12:58 EVNT.45743347._001931.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 10:42:07 (13716): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 12:58 pandaJob.out
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas    980117 Jul 26 12:58 agis_schedconf.cvmfs.json
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 12:58 agis_ddmendpoints.agis.ALL.json
2025-07-26 10:42:07 (13716): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 12:58 pilot3
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas 201651690 Jul 26 14:38 HITS.45743349._034147.pool.root.1
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas      1043 Jul 26 14:39 memory_monitor_summary.json
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas    239924 Jul 26 14:39 log.45743349._034147.job.log.tgz.1
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas      7780 Jul 26 14:39 heartbeat.json
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas       814 Jul 26 14:39 pilotlog.txt
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 14:39 pilot_heartbeat.json
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas    531228 Jul 26 14:39 log.45743349._034147.job.log.1
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 14:39 output.list
2025-07-26 10:42:07 (13716): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 14:39 runtime_log
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas    788480 Jul 26 14:39 result.tar.gz
2025-07-26 10:42:07 (13716): Guest Log: -rw-r--r--. 1 atlas atlas      8592 Jul 26 14:39 runtime_log.err
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas       656 Jul 26 14:39 iJDLDmvRoz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmeM0KDmRdS37n.diag
2025-07-26 10:42:07 (13716): Guest Log: Looking for outputfile HITS.45743349._034147.pool.root.1
2025-07-26 10:42:07 (13716): Guest Log: HITS file was successfully produced
2025-07-26 10:42:07 (13716): Guest Log: -rw-------. 1 atlas atlas 201651690 Jul 26 14:38 /home/atlas/RunAtlas/HITS.45743349._034147.pool.root.1
2025-07-26 10:42:09 (13716): Guest Log: Successfully finished the ATLAS job!
2025-07-26 10:42:09 (13716): Guest Log: Copying the results back to the shared directory!
2025-07-26 10:42:09 (13716): Guest Log:  *** Contents of shared directory: ***
2025-07-26 10:42:09 (13716): Guest Log: total 342608
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root 147808765 Jul 26 12:57 ATLAS.root_0
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root 201651690 Jul 26  2025 HITS.pool.root.1
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root     11783 Jul 26 12:57 init_data.xml
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root    542896 Jul 26 12:57 input.tar.gz
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root    788480 Jul 26  2025 result.tar.gz
2025-07-26 10:42:09 (13716): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 12:57 start_atlas.sh
2025-07-26 10:42:09 (13716): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 10:42:09 (13716): VM Completion File Detected.
2025-07-26 10:42:09 (13716): Powering off VM.
2025-07-26 10:42:09 (13716): Successfully stopped VM.
2025-07-26 10:42:09 (13716): Deregistering VM. (boinc_a7fe0b77e56ae249, slot#1)
2025-07-26 10:42:09 (13716): Removing network bandwidth throttle group from VM.
2025-07-26 10:42:09 (13716): Removing VM from VirtualBox.
10:42:14 (13716): called boinc_finish(0)

</stderr_txt>
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