Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:38:46 (496930): wrapper (7.7.26015): starting
08:38:46 (496930): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 08:38:46] Arguments: --nthreads 8
[2025-07-26 08:38:46] Threads: 8
[2025-07-26 08:38:46] Checking for CVMFS
[2025-07-26 08:38:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 08:38:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 08:38:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 08:38:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 08:38:50] 2.12.6.0 3531214 16926 287860 148777 3 126 19581878 32935937 24097 16776704 0 17293626 99.731 18622701 9256 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 08:38:50] CVMFS is ok
[2025-07-26 08:38:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 08:38:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 08:38:50] Further information can be found at the LHC@home message board.
[2025-07-26 08:38:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 08:38:50] Checking for apptainer binary...
[2025-07-26 08:38:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 08:38:50] Running /usr/bin/apptainer --version
[2025-07-26 08:38:51] apptainer version 1.4.1-1.el9
[2025-07-26 08:38:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 08:38:52] c6-12-25-2.aglt2.org
[2025-07-26 08:38:52] apptainer works
[2025-07-26 08:38:52] Set ATHENA_PROC_NUMBER=8
[2025-07-26 08:38:52] Set ATHENA_CORE_NUMBER=8
[2025-07-26 08:38:53] Starting ATLAS job with PandaID=6745103559
[2025-07-26 08:38:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:20:06 (496930): BOINC client no longer exists - exiting
10:20:06 (496930): timer handler: client dead, exiting
10:28:29 (779952): wrapper (7.7.26015): starting
10:28:29 (779952): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 10:28:29] Arguments: --nthreads 8
[2025-07-26 10:28:29] Threads: 8
[2025-07-26 10:28:29] This job has been restarted, cleaning up previous attempt
[2025-07-26 10:28:29] Checking for CVMFS
[2025-07-26 10:28:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 10:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 10:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 10:28:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 10:28:33] 2.12.6.0 3531214 17036 282384 148780 2 95 21323282 32935937 22325 16776704 0 17518373 99.722 19252994 9233 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 10:28:33] CVMFS is ok
[2025-07-26 10:28:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 10:28:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 10:28:33] Further information can be found at the LHC@home message board.
[2025-07-26 10:28:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 10:28:33] Checking for apptainer binary...
[2025-07-26 10:28:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 10:28:33] Running /usr/bin/apptainer --version
[2025-07-26 10:28:33] apptainer version 1.4.1-1.el9
[2025-07-26 10:28:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 10:28:35] c6-12-25-2.aglt2.org
[2025-07-26 10:28:35] apptainer works
[2025-07-26 10:28:36] Set ATHENA_PROC_NUMBER=8
[2025-07-26 10:28:36] Set ATHENA_CORE_NUMBER=8
[2025-07-26 10:28:36] Starting ATLAS job with PandaID=6745103559
[2025-07-26 10:28:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:29:28]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:29:28] 2025-07-26 23:28:53,482 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:29:28] 2025-07-26 23:28:53,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:29:28] 2025-07-26 23:28:53,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:29:28] 2025-07-26 23:28:53,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:29:28] 2025-07-26 23:28:53,508 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:29:28] 2025-07-26 23:28:53,510 | INFO     | sum of square deviations: 45382345156.770065
[2025-07-26 19:29:28] 2025-07-26 23:28:53,558 | INFO     | sum of deviations: 466905217056.1423
[2025-07-26 19:29:28] 2025-07-26 23:28:53,559 | INFO     | mean x: 1753556402.7855787
[2025-07-26 19:29:28] 2025-07-26 23:28:53,559 | INFO     | mean y: 2057678.9924098672
[2025-07-26 19:29:28] 2025-07-26 23:28:53,559 | INFO     | -- intersect: -18038980747.613663
[2025-07-26 19:29:28] 2025-07-26 23:28:53,559 | INFO     | intersect: -18038980747.613663
[2025-07-26 19:29:28] 2025-07-26 23:28:53,561 | INFO     | chi2: 7.227018974129932
[2025-07-26 19:29:28] 2025-07-26 23:28:53,563 | INFO     | sum of square deviations: 44102839319.32
[2025-07-26 19:29:28] 2025-07-26 23:28:53,587 | INFO     | sum of deviations: 523107867211.6532
[2025-07-26 19:29:28] 2025-07-26 23:28:53,588 | INFO     | mean x: 1753556250.289272
[2025-07-26 19:29:28] 2025-07-26 23:28:53,588 | INFO     | mean y: 2064341.9559386973
[2025-07-26 19:29:28] 2025-07-26 23:28:53,589 | INFO     | -- intersect: -20797028965.459454
[2025-07-26 19:29:28] 2025-07-26 23:28:53,589 | INFO     | intersect: -20797028965.459454
[2025-07-26 19:29:28] 2025-07-26 23:28:53,591 | INFO     | chi2: 5.848241541890157
[2025-07-26 19:29:28] 2025-07-26 23:28:53,591 | INFO     | current chi2=5.848241541890157 (change=19.078093432095457 %)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,592 | INFO     | right removable region: 521
[2025-07-26 19:29:28] 2025-07-26 23:28:53,594 | INFO     | sum of square deviations: 44102682731.739655
[2025-07-26 19:29:28] 2025-07-26 23:28:53,614 | INFO     | sum of deviations: 340348795176.57117
[2025-07-26 19:29:28] 2025-07-26 23:28:53,615 | INFO     | mean x: 1753556555.2911878
[2025-07-26 19:29:28] 2025-07-26 23:28:53,616 | INFO     | mean y: 2072748.450191571
[2025-07-26 19:29:28] 2025-07-26 23:28:53,616 | INFO     | -- intersect: -13530456882.401863
[2025-07-26 19:29:28] 2025-07-26 23:28:53,616 | INFO     | intersect: -13530456882.401863
[2025-07-26 19:29:28] 2025-07-26 23:28:53,618 | INFO     | chi2: 4.205172691621355
[2025-07-26 19:29:28] 2025-07-26 23:28:53,619 | INFO     | current chi2=4.205172691621355 (change=41.813177650780695 %)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,621 | INFO     | sum of square deviations: 42847395359.43869
[2025-07-26 19:29:28] 2025-07-26 23:28:53,638 | INFO     | sum of deviations: 258044755114.57043
[2025-07-26 19:29:28] 2025-07-26 23:28:53,639 | INFO     | mean x: 1753556707.7911024
[2025-07-26 19:29:28] 2025-07-26 23:28:53,639 | INFO     | mean y: 2082738.3849129593
[2025-07-26 19:29:28] 2025-07-26 23:28:53,640 | INFO     | -- intersect: -10558561787.275589
[2025-07-26 19:29:28] 2025-07-26 23:28:53,640 | INFO     | intersect: -10558561787.275589
[2025-07-26 19:29:28] 2025-07-26 23:28:53,642 | INFO     | chi2: 3.0291655920478977
[2025-07-26 19:29:28] 2025-07-26 23:28:53,642 | INFO     | current chi2=3.0291655920478977 (change=27.96572663749592 %)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,666 | INFO     | sum of square deviations: 41616123168.05469
[2025-07-26 19:29:28] 2025-07-26 23:28:53,682 | INFO     | sum of deviations: 200259850184.086
[2025-07-26 19:29:28] 2025-07-26 23:28:53,691 | INFO     | mean x: 1753556860.2929688
[2025-07-26 19:29:28] 2025-07-26 23:28:53,691 | INFO     | mean y: 2089893.052734375
[2025-07-26 19:29:28] 2025-07-26 23:28:53,711 | INFO     | -- intersect: -8436154888.025492
[2025-07-26 19:29:28] 2025-07-26 23:28:53,712 | INFO     | intersect: -8436154888.025492
[2025-07-26 19:29:28] 2025-07-26 23:28:53,714 | INFO     | chi2: 2.4971547826938854
[2025-07-26 19:29:28] 2025-07-26 23:28:53,714 | INFO     | current chi2=2.4971547826938854 (change=17.562949042820108 %)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,726 | INFO     | left removable region: 30
[2025-07-26 19:29:28] 2025-07-26 23:28:53,729 | INFO     | sum of square deviations: 36702677707.35645
[2025-07-26 19:29:28] 2025-07-26 23:28:53,800 | INFO     | sum of deviations: 157868109957.28894
[2025-07-26 19:29:28] 2025-07-26 23:28:53,801 | INFO     | mean x: 1753557134.7759674
[2025-07-26 19:29:28] 2025-07-26 23:28:53,801 | INFO     | mean y: 2110390.0753564155
[2025-07-26 19:29:28] 2025-07-26 23:28:53,802 | INFO     | -- intersect: -7540411514.633377
[2025-07-26 19:29:28] 2025-07-26 23:28:53,802 | INFO     | intersect: -7540411514.633377
[2025-07-26 19:29:28] 2025-07-26 23:28:53,817 | INFO     | chi2: 0.5202145519415152
[2025-07-26 19:29:28] 2025-07-26 23:28:53,818 | INFO     | -- intersect: -7540411514.633377
[2025-07-26 19:29:28] 2025-07-26 23:28:53,819 | INFO     | current memory leak: 4.30 B/s (using 491 data points, chi2=0.52)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,821 | INFO     | could have reported an average CPU frequency of 999 MHz (21 samples)
[2025-07-26 19:29:28] 2025-07-26 23:28:53,822 | INFO     | ..............................
[2025-07-26 19:29:28] 2025-07-26 23:28:53,823 | INFO     | . Timing measurements:
[2025-07-26 19:29:28] 2025-07-26 23:28:53,833 | INFO     | . get job = 0 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,834 | INFO     | . initial setup = 3 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,834 | INFO     | . payload setup = 57 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,834 | INFO     | . stage-in = 0 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,835 | INFO     | . payload execution = 32172 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,835 | INFO     | . stage-out = 5 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,835 | INFO     | . log creation = 1 s
[2025-07-26 19:29:28] 2025-07-26 23:28:53,835 | INFO     | ..............................
[2025-07-26 19:29:28] 2025-07-26 23:28:54,137 | INFO     | 
[2025-07-26 19:29:28] 2025-07-26 23:28:54,137 | INFO     | job summary report
[2025-07-26 19:29:28] 2025-07-26 23:28:54,138 | INFO     | --------------------------------------------------
[2025-07-26 19:29:28] 2025-07-26 23:28:54,138 | INFO     | PanDA job id: 6745103559
[2025-07-26 19:29:28] 2025-07-26 23:28:54,138 | INFO     | task id: 45743349
[2025-07-26 19:29:28] 2025-07-26 23:28:54,138 | INFO     | errors: (none)
[2025-07-26 19:29:28] 2025-07-26 23:28:54,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:29:28] 2025-07-26 23:28:54,139 | INFO     | pilot state: finished 
[2025-07-26 19:29:28] 2025-07-26 23:28:54,139 | INFO     | transexitcode: 0
[2025-07-26 19:29:28] 2025-07-26 23:28:54,139 | INFO     | exeerrorcode: 0
[2025-07-26 19:29:28] 2025-07-26 23:28:54,140 | INFO     | exeerrordiag: 
[2025-07-26 19:29:28] 2025-07-26 23:28:54,140 | INFO     | exitcode: 0
[2025-07-26 19:29:28] 2025-07-26 23:28:54,140 | INFO     | exitmsg: OK
[2025-07-26 19:29:28] 2025-07-26 23:28:54,140 | INFO     | cpuconsumptiontime: 128547 s
[2025-07-26 19:29:28] 2025-07-26 23:28:54,140 | INFO     | nevents: 400
[2025-07-26 19:29:28] 2025-07-26 23:28:54,141 | INFO     | neventsw: 0
[2025-07-26 19:29:28] 2025-07-26 23:28:54,141 | INFO     | pid: 816350
[2025-07-26 19:29:28] 2025-07-26 23:28:54,141 | INFO     | pgrp: 816350
[2025-07-26 19:29:28] 2025-07-26 23:28:54,141 | INFO     | corecount: 8
[2025-07-26 19:29:28] 2025-07-26 23:28:54,142 | INFO     | event service: False
[2025-07-26 19:29:28] 2025-07-26 23:28:54,142 | INFO     | sizes: {0: 2397248, 1: 2397304, 3: 2397531, 4: 2397531, 5: 2397559, 16: 2397615, 29: 2397771, 40: 2398001, 41: 2398089, 52: 2398117, 32236: 2435191, 32244: 2444189
[2025-07-26 19:29:28] 2025-07-26 23:28:54,142 | INFO     | --------------------------------------------------
[2025-07-26 19:29:28] 2025-07-26 23:28:54,142 | INFO     | 
[2025-07-26 19:29:28] 2025-07-26 23:28:54,143 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 19:29:28] 2025-07-26 23:28:54,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:29:28] 2025-07-26 23:28:54,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:29:28] 2025-07-26 23:28:54,250 | INFO     | job 6745103559 has completed (purged errors)
[2025-07-26 19:29:28] 2025-07-26 23:28:54,250 | INFO     | overall cleanup function is called
[2025-07-26 19:29:28] 2025-07-26 23:28:55,263 | INFO     | --- collectZombieJob: --- 10, [816350]
[2025-07-26 19:29:28] 2025-07-26 23:28:55,264 | INFO     | zombie collector waiting for pid 816350
[2025-07-26 19:29:28] 2025-07-26 23:28:55,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:29:28] 2025-07-26 23:28:55,264 | INFO     | collected zombie processes
[2025-07-26 19:29:28] 2025-07-26 23:28:55,264 | INFO     | will attempt to kill all subprocesses of pid=816350
[2025-07-26 19:29:28] 2025-07-26 23:28:56,732 | INFO     | process IDs to be killed: [816350] (in reverse order)
[2025-07-26 19:29:28] 2025-07-26 23:28:57,208 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:29:28] 2025-07-26 23:28:57,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:29:28] 2025-07-26 23:28:57,253 | INFO     | did not find any defunct processes belonging to 816350
[2025-07-26 19:29:28] 2025-07-26 23:28:57,392 | INFO     | did not find any defunct processes belonging to 816350
[2025-07-26 19:29:28] 2025-07-26 23:28:57,393 | INFO     | ready for new job
[2025-07-26 19:29:28] 2025-07-26 23:28:57,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:29:28] 2025-07-26 23:28:57,426 | INFO     | ***************************************
[2025-07-26 19:29:28] 2025-07-26 23:28:57,427 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:29:28] 2025-07-26 23:28:57,427 | INFO     | ***************************************
[2025-07-26 19:29:28] 2025-07-26 23:28:57,427 | INFO     | 
[2025-07-26 19:29:28] 2025-07-26 23:28:57,459 | INFO     | architecture information:
[2025-07-26 19:29:28] 2025-07-26 23:28:57,476 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:29:28] 2025-07-26 23:28:57,604 | INFO     | cat /etc/os-release:
[2025-07-26 19:29:28] NAME="CentOS Linux"
[2025-07-26 19:29:28] VERSION="7 (Core)"
[2025-07-26 19:29:28] ID="centos"
[2025-07-26 19:29:28] ID_LIKE="rhel fedora"
[2025-07-26 19:29:28] VERSION_ID="7"
[2025-07-26 19:29:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:29:28] ANSI_COLOR="0;31"
[2025-07-26 19:29:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:29:28] HOME_URL="https://www.centos.org/"
[2025-07-26 19:29:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:29:28] 
[2025-07-26 19:29:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:29:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:29:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:29:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:29:28] 
[2025-07-26 19:29:28] 2025-07-26 23:28:57,605 | INFO     | ***************************************
[2025-07-26 19:29:28] 2025-07-26 23:28:58,109 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 19:29:28] 2025-07-26 23:28:58,164 | INFO     | sufficient remaining disk space (95467601920 B)
[2025-07-26 19:29:28] 2025-07-26 23:28:58,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:29:28] 2025-07-26 23:28:58,165 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:29:28] 2025-07-26 23:28:58,165 | INFO     | update_server=False
[2025-07-26 19:29:28] 2025-07-26 23:28:58,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:29:28] 2025-07-26 23:28:58,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:29:28] 2025-07-26 23:28:58,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:29:28] 2025-07-26 23:28:58,180 | INFO     | aborting loop
[2025-07-26 19:29:28] 2025-07-26 23:28:58,571 | INFO     | all data control threads have been joined
[2025-07-26 19:29:28] 2025-07-26 23:28:59,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:29:28] 2025-07-26 23:28:59,172 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:28:59,186 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:28:59,229 | INFO     | all payload control threads have been joined
[2025-07-26 19:29:28] 2025-07-26 23:28:59,348 | INFO     | [job] validate thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:28:59,522 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:29:28] 2025-07-26 23:28:59,577 | INFO     | [data] control thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:28:59,600 | INFO     | all job control threads have been joined
[2025-07-26 19:29:28] 2025-07-26 23:28:59,978 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,062 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,163 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,166 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,187 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,234 | INFO     | [payload] control thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,411 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,426 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,444 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:00,606 | INFO     | [job] control thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:03,530 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:29:28] 2025-07-26 23:29:05,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273064322880)>', '<ExcThread(monitor, started 140271887054592)>']
[2025-07-26 19:29:28] 2025-07-26 23:29:10,133 | INFO     | all workflow threads have been joined
[2025-07-26 19:29:28] 2025-07-26 23:29:10,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:29:28] 2025-07-26 23:29:10,135 | INFO     | traces error code: 0
[2025-07-26 19:29:28] 2025-07-26 23:29:10,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:29:28] 2025-07-26 23:29:27,256 | INFO     | PID=792586 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 19:29:28] 2025-07-26 23:29:27,256 | INFO     | .. there are 22 such processes running
[2025-07-26 19:29:28] 2025-07-26 23:29:27,261 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:29:28] 2025-07-26 23:29:27,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:29:28] 2025-07-26 23:29:27,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:29:28] 2025-07-26 23:29:27,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:29:28] 2025-07-26 23:29:27,262 | INFO     | [monitor] control thread has ended
[2025-07-26 19:29:28] 2025-07-26 23:29:27,975 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:29:28] 2025-07-26 23:29:27,983 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:29:28] 2025-07-26 23:29:27,994 [wrapper] pilotpid: 792586
[2025-07-26 19:29:28] 2025-07-26 23:29:28,000 [wrapper] Pilot exit status: 0
[2025-07-26 19:29:28] 2025-07-26 23:29:28,034 [wrapper] pandaids: 6745103559 6745103559
[2025-07-26 19:29:28] 2025-07-26 23:29:28,239 [wrapper] cleanup supervisor_pilot 1984827 792587
[2025-07-26 19:29:28] 2025-07-26 23:29:28,250 [wrapper] Test setup, not cleaning
[2025-07-26 19:29:28] 2025-07-26 23:29:28,258 [wrapper] apfmon messages muted
[2025-07-26 19:29:28] 2025-07-26 23:29:28,267 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:29:28] 2025-07-26 23:29:28,274 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:29:28]  *** Error codes and diagnostics ***
[2025-07-26 19:29:28]     "exeErrorCode": 0,
[2025-07-26 19:29:28]     "exeErrorDiag": "",
[2025-07-26 19:29:28]     "pilotErrorCode": 0,
[2025-07-26 19:29:28]     "pilotErrorDiag": "",
[2025-07-26 19:29:28]  *** Listing of results directory ***
[2025-07-26 19:29:28] total 504480
[2025-07-26 19:29:28] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 05:57 pilot3.tar.gz
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:06 queuedata.json
[2025-07-26 19:29:28] -rwx------. 1 boincer umatlas     36292 Jul 26 06:07 runpilot2-wrapper.sh
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas       100 Jul 26 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:29:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 08:38 run_atlas
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas       105 Jul 26 08:38 job.xml
[2025-07-26 19:29:28] -rw-r--r--. 3 boincer umatlas 150332682 Jul 26 08:38 EVNT.45743347._002059.pool.root.1
[2025-07-26 19:29:28] -rw-r--r--. 3 boincer umatlas 150332682 Jul 26 08:38 ATLAS.root_0
[2025-07-26 19:29:28] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 08:38 input.tar.gz
[2025-07-26 19:29:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 08:38 start_atlas.sh
[2025-07-26 19:29:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 08:38 shared
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas         0 Jul 26 08:38 boinc_lockfile
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 10:28 pandaJob.out
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas    980133 Jul 26 10:29 agis_schedconf.cvmfs.json
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas      6859 Jul 26 19:21 init_data.xml
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas 207474177 Jul 26 19:25 HITS.45743349._036125.pool.root.1
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas       532 Jul 26 19:25 boinc_task_state.xml
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas      1050 Jul 26 19:28 memory_monitor_summary.json
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas   1593052 Jul 26 19:28 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas    497525 Jul 26 19:28 log.45743349._036125.job.log.tgz.1
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas        96 Jul 26 19:28 pilot_heartbeat.json
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas      7855 Jul 26 19:28 heartbeat.json
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 19:29 boinc_mmap_file
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas        29 Jul 26 19:29 wrapper_checkpoint.txt
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas       822 Jul 26 19:29 pilotlog.txt
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas   1786902 Jul 26 19:29 log.45743349._036125.job.log.1
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas       357 Jul 26 19:29 output.list
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas       620 Jul 26 19:29 runtime_log
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas   2304000 Jul 26 19:29 result.tar.gz
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas      8756 Jul 26 19:29 runtime_log.err
[2025-07-26 19:29:28] -rw-------. 1 boincer umatlas       791 Jul 26 19:29 q5zLDmwzqz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm4a0KDmk5as8m.diag
[2025-07-26 19:29:28] -rw-r--r--. 1 boincer umatlas     23312 Jul 26 19:29 stderr.txt
[2025-07-26 19:29:29] HITS file was successfully produced:
[2025-07-26 19:29:29] -rw-------. 1 boincer umatlas 207474177 Jul 26 19:25 shared/HITS.pool.root.1
[2025-07-26 19:29:29]  *** Contents of shared directory: ***
[2025-07-26 19:29:29] total 352228
[2025-07-26 19:29:29] -rw-r--r--. 3 boincer umatlas 150332682 Jul 26 08:38 ATLAS.root_0
[2025-07-26 19:29:29] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 08:38 input.tar.gz
[2025-07-26 19:29:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 08:38 start_atlas.sh
[2025-07-26 19:29:29] -rw-------. 1 boincer umatlas 207474177 Jul 26 19:25 HITS.pool.root.1
[2025-07-26 19:29:29] -rw-------. 1 boincer umatlas   2304000 Jul 26 19:29 result.tar.gz
19:29:30 (779952): run_atlas exited; CPU time 131137.683714
19:29:30 (779952): called boinc_finish(0)

</stderr_txt>
]]>

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