Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:19 (3974995): wrapper (7.7.26015): starting
08:36:19 (3974995): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 08:36:19] Arguments: --nthreads 8
[2025-07-26 08:36:19] Threads: 8
[2025-07-26 08:36:19] Checking for CVMFS
[2025-07-26 08:36:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 08:36:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 08:36:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 08:36:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 08:36:21] 2.13.0.0 97685 25803 432240 148777 1 340 27294826 32935937 17108 16776704 0 61194387 99.611 98019750 29631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 08:36:21] CVMFS is ok
[2025-07-26 08:36:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 08:36:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 08:36:21] Further information can be found at the LHC@home message board.
[2025-07-26 08:36:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 08:36:21] Checking for apptainer binary...
[2025-07-26 08:36:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 08:36:21] Running /usr/bin/apptainer --version
[2025-07-26 08:36:21] apptainer version 1.4.1-1.el9
[2025-07-26 08:36:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 08:36:22] c6-4-5-1.aglt2.org
[2025-07-26 08:36:22] apptainer works
[2025-07-26 08:36:22] Set ATHENA_PROC_NUMBER=8
[2025-07-26 08:36:22] Set ATHENA_CORE_NUMBER=8
[2025-07-26 08:36:22] Starting ATLAS job with PandaID=6745103486
[2025-07-26 08:36:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 11:47:40]  *** The last 200 lines of the pilot log: ***
[2025-07-26 11:47:40] 2025-07-26 15:47:04,245 | INFO     | monitor loop #740: job 0:6745103486 is in state 'finished'
[2025-07-26 11:47:40] 2025-07-26 15:47:04,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,727 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 11:47:40] 2025-07-26 15:47:06,736 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2765.6062187500006
[2025-07-26 11:47:40] 2025-07-26 15:47:06,750 | INFO     | monitor loop #741: job 0:6745103486 is in state 'finished'
[2025-07-26 11:47:40] 2025-07-26 15:47:06,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,850 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745103486/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,852 | INFO     | extracted standard info from prmon json
[2025-07-26 11:47:40] 2025-07-26 15:47:06,852 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:47:40] 2025-07-26 15:47:06,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:47:40] 2025-07-26 15:47:06,853 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:47:40] 2025-07-26 15:47:06,853 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:47:40] 2025-07-26 15:47:06,904 | INFO     | fitting pss+swap vs Time
[2025-07-26 11:47:40] 2025-07-26 15:47:06,905 | INFO     | sum of square deviations: 1931915553.8260844
[2025-07-26 11:47:40] 2025-07-26 15:47:06,906 | INFO     | sum of deviations: -838694757.6956482
[2025-07-26 11:47:40] 2025-07-26 15:47:06,906 | INFO     | mean x: 1753539166.1086957
[2025-07-26 11:47:40] 2025-07-26 15:47:06,949 | INFO     | mean y: 2182615.434782609
[2025-07-26 11:47:40] 2025-07-26 15:47:06,949 | INFO     | -- intersect: 763439546.7311472
[2025-07-26 11:47:40] 2025-07-26 15:47:06,949 | INFO     | intersect: 763439546.7311472
[2025-07-26 11:47:40] 2025-07-26 15:47:06,950 | INFO     | chi2: 2.5367246596751585
[2025-07-26 11:47:40] 2025-07-26 15:47:06,950 | INFO     | sum of square deviations: 1778662813.0391102
[2025-07-26 11:47:40] 2025-07-26 15:47:06,952 | INFO     | sum of deviations: -1449389949.3016706
[2025-07-26 11:47:40] 2025-07-26 15:47:06,952 | INFO     | mean x: 1753539013.5977654
[2025-07-26 11:47:40] 2025-07-26 15:47:06,952 | INFO     | mean y: 2182003.2458100556
[2025-07-26 11:47:40] 2025-07-26 15:47:06,952 | INFO     | -- intersect: 1431099166.962934
[2025-07-26 11:47:40] 2025-07-26 15:47:06,952 | INFO     | intersect: 1431099166.962934
[2025-07-26 11:47:40] 2025-07-26 15:47:06,953 | INFO     | chi2: 2.533105523470115
[2025-07-26 11:47:40] 2025-07-26 15:47:06,953 | INFO     | current chi2=2.533105523470115 (change=0.14266965045811214 %)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,953 | INFO     | right removable region: 178
[2025-07-26 11:47:40] 2025-07-26 15:47:06,953 | INFO     | sum of square deviations: 1778650611.9217908
[2025-07-26 11:47:40] 2025-07-26 15:47:06,954 | INFO     | sum of deviations: -33582657884.435745
[2025-07-26 11:47:40] 2025-07-26 15:47:06,954 | INFO     | mean x: 1753539318.6256983
[2025-07-26 11:47:40] 2025-07-26 15:47:06,954 | INFO     | mean y: 2214947.4860335197
[2025-07-26 11:47:40] 2025-07-26 15:47:06,955 | INFO     | -- intersect: 33110747128.90514
[2025-07-26 11:47:40] 2025-07-26 15:47:06,955 | INFO     | intersect: 33110747128.90514
[2025-07-26 11:47:40] 2025-07-26 15:47:06,955 | INFO     | chi2: 0.5110636729528371
[2025-07-26 11:47:40] 2025-07-26 15:47:06,955 | INFO     | current chi2=0.5110636729528371 (change=79.85340383696662 %)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,955 | INFO     | sum of square deviations: 1633711407.4080532
[2025-07-26 11:47:40] 2025-07-26 15:47:06,956 | INFO     | sum of deviations: -33976937786.53447
[2025-07-26 11:47:40] 2025-07-26 15:47:06,956 | INFO     | mean x: 1753539471.1436782
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | mean y: 2215246.7413793104
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | -- intersect: 36471264337.73545
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | intersect: 36471264337.73545
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | chi2: 0.4303517939697902
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | current chi2=0.4303517939697902 (change=15.792920384402919 %)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | left removable region: 20
[2025-07-26 11:47:40] 2025-07-26 15:47:06,957 | INFO     | sum of square deviations: 1223198422.354431
[2025-07-26 11:47:40] 2025-07-26 15:47:06,961 | INFO     | sum of deviations: -18932617416.215176
[2025-07-26 11:47:40] 2025-07-26 15:47:06,961 | INFO     | mean x: 1753539593.1518986
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | mean y: 2197414.0506329113
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | -- intersect: 27143414762.441574
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | intersect: 27143414762.441574
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | chi2: 0.3458308987103276
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | -- intersect: 27143414762.441574
[2025-07-26 11:47:40] 2025-07-26 15:47:06,962 | INFO     | current memory leak: -15.48 B/s (using 158 data points, chi2=0.35)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,963 | INFO     | could have reported an average CPU frequency of 2769 MHz (10 samples)
[2025-07-26 11:47:40] 2025-07-26 15:47:06,963 | INFO     | ..............................
[2025-07-26 11:47:40] 2025-07-26 15:47:06,963 | INFO     | . Timing measurements:
[2025-07-26 11:47:40] 2025-07-26 15:47:06,963 | INFO     | . get job = 0 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . initial setup = 10 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . payload setup = 47 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . stage-in = 0 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . payload execution = 11242 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . stage-out = 4 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | . log creation = 0 s
[2025-07-26 11:47:40] 2025-07-26 15:47:06,964 | INFO     | ..............................
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | job summary report
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | --------------------------------------------------
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | PanDA job id: 6745103486
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | task id: 45743349
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | errors: (none)
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | pilot state: finished 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,073 | INFO     | transexitcode: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:07,074 | INFO     | exeerrorcode: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:07,074 | INFO     | exeerrordiag: 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,074 | INFO     | exitcode: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:07,074 | INFO     | exitmsg: OK
[2025-07-26 11:47:40] 2025-07-26 15:47:07,074 | INFO     | cpuconsumptiontime: 44027 s
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | nevents: 400
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | neventsw: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | pid: 4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | pgrp: 4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | corecount: 8
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | event service: False
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | sizes: {0: 2397248, 1: 2397304, 2: 2397360, 3: 2397559, 14: 2397559, 25: 2397587, 29: 2398005, 36: 2398033, 11294: 2427376, 11299: 2436374, 11300: 2436430, 11319: 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | --------------------------------------------------
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | 
[2025-07-26 11:47:40] 2025-07-26 15:47:07,075 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 11:47:40] 2025-07-26 15:47:07,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 11:47:40] 2025-07-26 15:47:07,131 | INFO     | job 6745103486 has completed (purged errors)
[2025-07-26 11:47:40] 2025-07-26 15:47:07,132 | INFO     | overall cleanup function is called
[2025-07-26 11:47:40] 2025-07-26 15:47:08,143 | INFO     | --- collectZombieJob: --- 10, [4014227]
[2025-07-26 11:47:40] 2025-07-26 15:47:08,143 | INFO     | zombie collector waiting for pid 4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:08,143 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 11:47:40] 2025-07-26 15:47:08,143 | INFO     | collected zombie processes
[2025-07-26 11:47:40] 2025-07-26 15:47:08,143 | INFO     | will attempt to kill all subprocesses of pid=4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:09,133 | INFO     | process IDs to be killed: [4014227] (in reverse order)
[2025-07-26 11:47:40] 2025-07-26 15:47:09,376 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 11:47:40] 2025-07-26 15:47:09,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 11:47:40] 2025-07-26 15:47:09,428 | INFO     | did not find any defunct processes belonging to 4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:09,478 | INFO     | did not find any defunct processes belonging to 4014227
[2025-07-26 11:47:40] 2025-07-26 15:47:09,478 | INFO     | ready for new job
[2025-07-26 11:47:40] 2025-07-26 15:47:09,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 11:47:40] 2025-07-26 15:47:09,480 | INFO     | ***************************************
[2025-07-26 11:47:40] 2025-07-26 15:47:09,480 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 11:47:40] 2025-07-26 15:47:09,480 | INFO     | ***************************************
[2025-07-26 11:47:40] 2025-07-26 15:47:09,491 | INFO     | 
[2025-07-26 11:47:40] 2025-07-26 15:47:09,515 | INFO     | architecture information:
[2025-07-26 11:47:40] 2025-07-26 15:47:09,521 | INFO     | executing command: cat /etc/os-release
[2025-07-26 11:47:40] 2025-07-26 15:47:09,592 | INFO     | cat /etc/os-release:
[2025-07-26 11:47:40] NAME="CentOS Linux"
[2025-07-26 11:47:40] VERSION="7 (Core)"
[2025-07-26 11:47:40] ID="centos"
[2025-07-26 11:47:40] ID_LIKE="rhel fedora"
[2025-07-26 11:47:40] VERSION_ID="7"
[2025-07-26 11:47:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 11:47:40] ANSI_COLOR="0;31"
[2025-07-26 11:47:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 11:47:40] HOME_URL="https://www.centos.org/"
[2025-07-26 11:47:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 11:47:40] 
[2025-07-26 11:47:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 11:47:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 11:47:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 11:47:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 11:47:40] 
[2025-07-26 11:47:40] 2025-07-26 15:47:09,592 | INFO     | ***************************************
[2025-07-26 11:47:40] 2025-07-26 15:47:10,106 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 11:47:40] 2025-07-26 15:47:10,336 | INFO     | sufficient remaining disk space (76234620928 B)
[2025-07-26 11:47:40] 2025-07-26 15:47:10,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 11:47:40] 2025-07-26 15:47:10,336 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 11:47:40] 2025-07-26 15:47:10,336 | INFO     | update_server=False
[2025-07-26 11:47:40] 2025-07-26 15:47:10,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 11:47:40] 2025-07-26 15:47:10,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:47:40] 2025-07-26 15:47:10,338 | INFO     | aborting loop
[2025-07-26 11:47:40] 2025-07-26 15:47:10,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 11:47:40] 2025-07-26 15:47:10,474 | INFO     | all data control threads have been joined
[2025-07-26 11:47:40] 2025-07-26 15:47:11,001 | INFO     | all job control threads have been joined
[2025-07-26 11:47:40] 2025-07-26 15:47:11,343 | INFO     | [job] retrieve thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:11,374 | INFO     | [job] job monitor thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:11,385 | INFO     | all payload control threads have been joined
[2025-07-26 11:47:40] 2025-07-26 15:47:11,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 11:47:40] 2025-07-26 15:47:11,480 | INFO     | [data] control thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:11,581 | INFO     | [data] copytool_in thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:11,656 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:11,951 | INFO     | [payload] validate_post thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,007 | INFO     | [job] control thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,104 | INFO     | [payload] failed_post thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,108 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:47:40] 2025-07-26 15:47:12,348 | INFO     | [data] copytool_out thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,391 | INFO     | [payload] control thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,565 | INFO     | [job] validate thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,783 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:12,804 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:13,113 | INFO     | [job] queue monitor thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:15,481 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 11:47:40] 2025-07-26 15:47:17,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715311535936)>', '<ExcThread(monitor, started 139714539546368)>']
[2025-07-26 11:47:40] 2025-07-26 15:47:22,139 | INFO     | all workflow threads have been joined
[2025-07-26 11:47:40] 2025-07-26 15:47:22,139 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 11:47:40] 2025-07-26 15:47:22,140 | INFO     | traces error code: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:22,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 11:47:40] 2025-07-26 15:47:39,199 | INFO     | PID=3987229 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | INFO     | .. there are 25 such processes running
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 11:47:40] 2025-07-26 15:47:39,200 | INFO     | [monitor] control thread has ended
[2025-07-26 11:47:40] 2025-07-26 15:47:39,512 [wrapper] ==== pilot stdout END ====
[2025-07-26 11:47:40] 2025-07-26 15:47:39,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 11:47:40] 2025-07-26 15:47:39,542 [wrapper] pilotpid: 3987229
[2025-07-26 11:47:40] 2025-07-26 15:47:39,559 [wrapper] Pilot exit status: 0
[2025-07-26 11:47:40] 2025-07-26 15:47:39,701 [wrapper] pandaids: 6745103486
[2025-07-26 11:47:40] 2025-07-26 15:47:39,790 [wrapper] cleanup supervisor_pilot  813505 3987230
[2025-07-26 11:47:40] 2025-07-26 15:47:39,801 [wrapper] Test setup, not cleaning
[2025-07-26 11:47:40] 2025-07-26 15:47:39,841 [wrapper] apfmon messages muted
[2025-07-26 11:47:40] 2025-07-26 15:47:39,868 [wrapper] ==== wrapper stdout END ====
[2025-07-26 11:47:40] 2025-07-26 15:47:39,886 [wrapper] ==== wrapper stderr END ====
[2025-07-26 11:47:40]  *** Error codes and diagnostics ***
[2025-07-26 11:47:40]     "exeErrorCode": 0,
[2025-07-26 11:47:40]     "exeErrorDiag": "",
[2025-07-26 11:47:40]     "pilotErrorCode": 0,
[2025-07-26 11:47:40]     "pilotErrorDiag": "",
[2025-07-26 11:47:40]  *** Listing of results directory ***
[2025-07-26 11:47:40] total 352032
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 05:57 pilot3.tar.gz
[2025-07-26 11:47:40] -rwx------. 1 boincer umatlas     36292 Jul 26 06:04 runpilot2-wrapper.sh
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:04 queuedata.json
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas       100 Jul 26 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 11:47:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 08:36 run_atlas
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas       105 Jul 26 08:36 job.xml
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas 146823796 Jul 26 08:36 EVNT.45743347._002054.pool.root.1
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 08:36 start_atlas.sh
[2025-07-26 11:47:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 08:36 shared
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 08:36 input.tar.gz
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas         0 Jul 26 08:36 boinc_lockfile
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 08:36 pandaJob.out
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas    980117 Jul 26 08:37 agis_schedconf.cvmfs.json
[2025-07-26 11:47:40] drwx------. 4 boincer umatlas      4096 Jul 26 08:37 pilot3
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas      6856 Jul 26 11:37 init_data.xml
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas 207095062 Jul 26 11:45 HITS.45743349._036052.pool.root.1
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas       531 Jul 26 11:46 boinc_task_state.xml
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas      1041 Jul 26 11:46 memory_monitor_summary.json
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas   1593052 Jul 26 11:46 agis_ddmendpoints.agis.ALL.json
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas    369364 Jul 26 11:46 log.45743349._036052.job.log.tgz.1
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas        95 Jul 26 11:46 pilot_heartbeat.json
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas      7828 Jul 26 11:47 heartbeat.json
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 11:47 boinc_mmap_file
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas        28 Jul 26 11:47 wrapper_checkpoint.txt
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas       823 Jul 26 11:47 pilotlog.txt
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas    970032 Jul 26 11:47 log.45743349._036052.job.log.1
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas       357 Jul 26 11:47 output.list
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas       620 Jul 26 11:47 runtime_log
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas   1361920 Jul 26 11:47 result.tar.gz
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas      8661 Jul 26 11:47 runtime_log.err
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas       657 Jul 26 11:47 OpKKDmqwqz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmloRLDmLwYEHo.diag
[2025-07-26 11:47:40] -rw-r--r--. 1 boincer umatlas     21298 Jul 26 11:47 stderr.txt
[2025-07-26 11:47:40] HITS file was successfully produced:
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas 207095062 Jul 26 11:45 shared/HITS.pool.root.1
[2025-07-26 11:47:40]  *** Contents of shared directory: ***
[2025-07-26 11:47:40] total 347516
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas 146823796 Jul 26 08:36 ATLAS.root_0
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 08:36 start_atlas.sh
[2025-07-26 11:47:40] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 08:36 input.tar.gz
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas 207095062 Jul 26 11:45 HITS.pool.root.1
[2025-07-26 11:47:40] -rw-------. 1 boincer umatlas   1361920 Jul 26 11:47 result.tar.gz
11:47:41 (3974995): run_atlas exited; CPU time 44398.643796
11:47:41 (3974995): called boinc_finish(0)

</stderr_txt>
]]>

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