Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:05:01 (780087): wrapper (7.7.26015): starting
10:05:01 (780087): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 10:05:01] Arguments: --nthreads 12
[2025-07-26 10:05:01] Threads: 12
[2025-07-26 10:05:01] Checking for CVMFS
[2025-07-26 10:05:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 10:05:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 10:05:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 10:05:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 10:05:01] 2.13.0.0 842134 17021 360780 148778 1 334 31658658 32935936 11988 16776704 0 38905588 99.701 70215364 32737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 10:05:01] CVMFS is ok
[2025-07-26 10:05:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 10:05:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 10:05:01] Further information can be found at the LHC@home message board.
[2025-07-26 10:05:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 10:05:01] Checking for apptainer binary...
[2025-07-26 10:05:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 10:05:01] Running /usr/bin/apptainer --version
[2025-07-26 10:05:01] apptainer version 1.4.1-1.el9
[2025-07-26 10:05:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 10:05:02] c6-5-37-2.aglt2.org
[2025-07-26 10:05:02] apptainer works
[2025-07-26 10:05:02] Set ATHENA_PROC_NUMBER=12
[2025-07-26 10:05:02] Set ATHENA_CORE_NUMBER=12
[2025-07-26 10:05:02] Starting ATLAS job with PandaID=6745098348
[2025-07-26 10:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 11:39:23]  *** The last 200 lines of the pilot log: ***
[2025-07-26 11:39:23]  protocol_id=None
[2025-07-26 11:39:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 11:39:23]  replicas=None
[2025-07-26 11:39:23]  scope=mc23_13p6TeV
[2025-07-26 11:39:23]  status=None
[2025-07-26 11:39:23]  status_code=0
[2025-07-26 11:39:23]  storage_token=
[2025-07-26 11:39:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745098348/log.45743349._033525.job.log.tgz.1
[2025-07-26 11:39:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/fa/log.45743349._033525.job.log.tgz.1
[2025-07-26 11:39:23]  workdir=None
[2025-07-26 11:39:23] ]
[2025-07-26 11:39:23] 2025-07-26 15:38:45,243 | INFO     | transferring file log.45743349._033525.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745098348/log.45743349._033525.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 11:39:23] 2025-07-26 15:38:45,252 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745098348/log.45743349._033525.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._033525.job
[2025-07-26 11:39:23] 2025-07-26 15:38:45,275 | INFO     | adding to output.list: log.45743349._033525.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/fa/log.45743349._033525.job.log.tg
[2025-07-26 11:39:23] 2025-07-26 15:38:45,277 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 11:39:23] 2025-07-26 15:38:45,277 | INFO     | summary of transferred files:
[2025-07-26 11:39:23] 2025-07-26 15:38:45,278 | INFO     |  -- lfn=log.45743349._033525.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 11:39:23] 2025-07-26 15:38:45,278 | INFO     | stage-out finished correctly
[2025-07-26 11:39:23] 2025-07-26 15:38:45,413 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 11:39:23] 2025-07-26 15:38:45,537 | INFO     | job 6745098348 has state=finished
[2025-07-26 11:39:23] 2025-07-26 15:38:45,538 | INFO     | preparing for final server update for job 6745098348 in state='finished'
[2025-07-26 11:39:23] 2025-07-26 15:38:45,539 | INFO     | this job has now completed (state=finished)
[2025-07-26 11:39:23] 2025-07-26 15:38:45,539 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 11:39:23] 2025-07-26 15:38:45,539 | INFO     | log transfer has been attempted: DONE
[2025-07-26 11:39:23] 2025-07-26 15:38:45,539 | INFO     | job 6745098348 has finished - writing final server update
[2025-07-26 11:39:23] 2025-07-26 15:38:45,539 | INFO     | total number of processed events: 400 (read)
[2025-07-26 11:39:23] 2025-07-26 15:38:45,541 | INFO     | executing command: lscpu
[2025-07-26 11:39:23] 2025-07-26 15:38:45,603 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 11:39:23] 2025-07-26 15:38:45,776 | WARNING  | process 792381 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 11:39:23] 2025-07-26 15:38:45,777 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745098348/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:39:23] 2025-07-26 15:38:46,060 | INFO     | number of running child processes to parent process 792381: 1
[2025-07-26 11:39:23] 2025-07-26 15:38:46,060 | INFO     | maximum number of monitored processes: 6
[2025-07-26 11:39:23] 2025-07-26 15:38:48,563 | INFO     | monitor loop #391: job 0:6745098348 is in state 'finished'
[2025-07-26 11:39:23] 2025-07-26 15:38:48,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:39:23] 2025-07-26 15:38:50,821 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 11:39:23] 2025-07-26 15:38:50,843 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2588.686196428572
[2025-07-26 11:39:23] 2025-07-26 15:38:50,868 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745098348/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:39:23] 2025-07-26 15:38:50,869 | INFO     | extracted standard info from prmon json
[2025-07-26 11:39:23] 2025-07-26 15:38:50,869 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:39:23] 2025-07-26 15:38:50,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:39:23] 2025-07-26 15:38:50,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:39:23] 2025-07-26 15:38:50,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:39:23] 2025-07-26 15:38:50,871 | INFO     | fitting pss+swap vs Time
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | sum of square deviations: 190403206.89411813
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | sum of deviations: -2341691049.9058824
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | mean x: 1753541620.035294
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | mean y: 2492582.6352941175
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | -- intersect: 21568582693.489193
[2025-07-26 11:39:23] 2025-07-26 15:38:50,872 | INFO     | intersect: 21568582693.489193
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | chi2: 0.0760851544821356
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | -- intersect: 21568582693.489193
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | current memory leak: -12.30 B/s (using 85 data points, chi2=0.08)
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | could have reported an average CPU frequency of 2590 MHz (7 samples)
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | ..............................
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | . Timing measurements:
[2025-07-26 11:39:23] 2025-07-26 15:38:50,873 | INFO     | . get job = 0 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . initial setup = 6 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . payload setup = 9 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . stage-in = 0 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . payload execution = 5577 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . stage-out = 1 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | . log creation = 0 s
[2025-07-26 11:39:23] 2025-07-26 15:38:50,874 | INFO     | ..............................
[2025-07-26 11:39:23] 2025-07-26 15:38:51,232 | INFO     | 
[2025-07-26 11:39:23] 2025-07-26 15:38:51,232 | INFO     | job summary report
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | --------------------------------------------------
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | PanDA job id: 6745098348
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | task id: 45743349
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | errors: (none)
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | pilot state: finished 
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | transexitcode: 0
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | exeerrorcode: 0
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | exeerrordiag: 
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | exitcode: 0
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | exitmsg: OK
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | cpuconsumptiontime: 48152 s
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | nevents: 400
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | neventsw: 0
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | pid: 792381
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | pgrp: 792381
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | corecount: 12
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | event service: False
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | sizes: {0: 2397469, 6: 2397731, 11: 2397759, 5587: 2424373, 5588: 2433371, 5589: 2433427, 5594: 2433749}
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | --------------------------------------------------
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | 
[2025-07-26 11:39:23] 2025-07-26 15:38:51,233 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | job 6745098348 has completed (purged errors)
[2025-07-26 11:39:23] 2025-07-26 15:38:51,255 | INFO     | overall cleanup function is called
[2025-07-26 11:39:23] 2025-07-26 15:38:52,263 | INFO     | --- collectZombieJob: --- 10, [792381]
[2025-07-26 11:39:23] 2025-07-26 15:38:52,263 | INFO     | zombie collector waiting for pid 792381
[2025-07-26 11:39:23] 2025-07-26 15:38:52,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 11:39:23] 2025-07-26 15:38:52,264 | INFO     | collected zombie processes
[2025-07-26 11:39:23] 2025-07-26 15:38:52,264 | INFO     | will attempt to kill all subprocesses of pid=792381
[2025-07-26 11:39:23] 2025-07-26 15:38:52,584 | INFO     | process IDs to be killed: [792381] (in reverse order)
[2025-07-26 11:39:23] 2025-07-26 15:38:52,699 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 11:39:23] 2025-07-26 15:38:52,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 11:39:23] 2025-07-26 15:38:52,714 | INFO     | did not find any defunct processes belonging to 792381
[2025-07-26 11:39:23] 2025-07-26 15:38:52,728 | INFO     | did not find any defunct processes belonging to 792381
[2025-07-26 11:39:23] 2025-07-26 15:38:52,729 | INFO     | ready for new job
[2025-07-26 11:39:23] 2025-07-26 15:38:52,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 11:39:23] 2025-07-26 15:38:52,732 | INFO     | ***************************************
[2025-07-26 11:39:23] 2025-07-26 15:38:52,733 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 11:39:23] 2025-07-26 15:38:52,733 | INFO     | ***************************************
[2025-07-26 11:39:23] 2025-07-26 15:38:52,733 | INFO     | 
[2025-07-26 11:39:23] 2025-07-26 15:38:52,749 | INFO     | architecture information:
[2025-07-26 11:39:23] 2025-07-26 15:38:52,750 | INFO     | executing command: cat /etc/os-release
[2025-07-26 11:39:23] 2025-07-26 15:38:52,767 | INFO     | cat /etc/os-release:
[2025-07-26 11:39:23] NAME="CentOS Linux"
[2025-07-26 11:39:23] VERSION="7 (Core)"
[2025-07-26 11:39:23] ID="centos"
[2025-07-26 11:39:23] ID_LIKE="rhel fedora"
[2025-07-26 11:39:23] VERSION_ID="7"
[2025-07-26 11:39:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 11:39:23] ANSI_COLOR="0;31"
[2025-07-26 11:39:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 11:39:23] HOME_URL="https://www.centos.org/"
[2025-07-26 11:39:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 11:39:23] 
[2025-07-26 11:39:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 11:39:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 11:39:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 11:39:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 11:39:23] 
[2025-07-26 11:39:23] 2025-07-26 15:38:52,768 | INFO     | ***************************************
[2025-07-26 11:39:23] 2025-07-26 15:38:53,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 11:39:23] 2025-07-26 15:38:53,293 | INFO     | sufficient remaining disk space (76541853696 B)
[2025-07-26 11:39:23] 2025-07-26 15:38:53,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 11:39:23] 2025-07-26 15:38:53,294 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 11:39:23] 2025-07-26 15:38:53,294 | INFO     | update_server=False
[2025-07-26 11:39:23] 2025-07-26 15:38:53,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 11:39:23] 2025-07-26 15:38:53,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 11:39:23] 2025-07-26 15:38:53,520 | INFO     | all payload control threads have been joined
[2025-07-26 11:39:23] 2025-07-26 15:38:53,569 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 11:39:23] 2025-07-26 15:38:53,569 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 11:39:23] 2025-07-26 15:38:53,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:39:23] 2025-07-26 15:38:53,569 | INFO     | will abort loop
[2025-07-26 11:39:23] 2025-07-26 15:38:53,619 | INFO     | all job control threads have been joined
[2025-07-26 11:39:23] 2025-07-26 15:38:54,239 | INFO     | all data control threads have been joined
[2025-07-26 11:39:23] 2025-07-26 15:38:54,299 | INFO     | [job] retrieve thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:54,352 | INFO     | [payload] failed_post thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:54,523 | INFO     | [payload] control thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:54,575 | INFO     | [job] job monitor thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:54,595 | INFO     | [payload] validate_post thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:54,624 | INFO     | [job] control thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,066 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,069 | INFO     | [job] validate thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,075 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,244 | INFO     | [data] control thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,368 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,427 | INFO     | [data] copytool_out thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,747 | INFO     | [data] copytool_in thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:38:55,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:39:23] 2025-07-26 15:38:56,044 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 11:39:23] 2025-07-26 15:38:56,999 | INFO     | [job] queue monitor thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:39:00,049 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:39:04,347 | INFO     | job.realtimelogging is not enabled
[2025-07-26 11:39:23] 2025-07-26 15:39:05,352 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 11:39:23] 2025-07-26 15:39:05,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453711566656)>', '<ExcThread(monitor, started 140453072594688)>']
[2025-07-26 11:39:23] 2025-07-26 15:39:10,616 | INFO     | all workflow threads have been joined
[2025-07-26 11:39:23] 2025-07-26 15:39:10,616 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 11:39:23] 2025-07-26 15:39:10,617 | INFO     | traces error code: 0
[2025-07-26 11:39:23] 2025-07-26 15:39:10,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 11:39:23] 2025-07-26 15:39:22,720 | INFO     | PID=784569 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 11:39:23] 2025-07-26 15:39:22,720 | INFO     | .. there are 11 such processes running
[2025-07-26 11:39:23] 2025-07-26 15:39:22,721 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 11:39:23] 2025-07-26 15:39:22,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 11:39:23] 2025-07-26 15:39:22,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 11:39:23] 2025-07-26 15:39:22,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 11:39:23] 2025-07-26 15:39:22,722 | INFO     | [monitor] control thread has ended
[2025-07-26 11:39:23] 2025-07-26 15:39:22,942 [wrapper] ==== pilot stdout END ====
[2025-07-26 11:39:23] 2025-07-26 15:39:22,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 11:39:23] 2025-07-26 15:39:22,948 [wrapper] pilotpid: 784569
[2025-07-26 11:39:23] 2025-07-26 15:39:22,952 [wrapper] Pilot exit status: 0
[2025-07-26 11:39:23] 2025-07-26 15:39:22,964 [wrapper] pandaids: 6745098348
[2025-07-26 11:39:23] 2025-07-26 15:39:23,047 [wrapper] cleanup supervisor_pilot 1027722 784570
[2025-07-26 11:39:23] 2025-07-26 15:39:23,051 [wrapper] Test setup, not cleaning
[2025-07-26 11:39:23] 2025-07-26 15:39:23,055 [wrapper] apfmon messages muted
[2025-07-26 11:39:23] 2025-07-26 15:39:23,059 [wrapper] ==== wrapper stdout END ====
[2025-07-26 11:39:23] 2025-07-26 15:39:23,062 [wrapper] ==== wrapper stderr END ====
[2025-07-26 11:39:23]  *** Error codes and diagnostics ***
[2025-07-26 11:39:23]     "exeErrorCode": 0,
[2025-07-26 11:39:23]     "exeErrorDiag": "",
[2025-07-26 11:39:23]     "pilotErrorCode": 0,
[2025-07-26 11:39:23]     "pilotErrorDiag": "",
[2025-07-26 11:39:23]  *** Listing of results directory ***
[2025-07-26 11:39:23] total 346872
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 01:25 pilot3.tar.gz
[2025-07-26 11:39:23] -rwx------. 1 boincer umatlas     36292 Jul 26 02:19 runpilot2-wrapper.sh
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 02:19 queuedata.json
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas       100 Jul 26 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 11:39:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 10:05 run_atlas
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas       105 Jul 26 10:05 job.xml
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas 146596339 Jul 26 10:05 EVNT.45743347._001897.pool.root.1
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 10:05 start_atlas.sh
[2025-07-26 11:39:23] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 10:05 shared
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas    542880 Jul 26 10:05 input.tar.gz
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas         0 Jul 26 10:05 boinc_lockfile
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas      2560 Jul 26 10:05 pandaJob.out
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas    980133 Jul 26 10:05 agis_schedconf.cvmfs.json
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas   1593052 Jul 26 10:05 agis_ddmendpoints.agis.ALL.json
[2025-07-26 11:39:23] drwx------. 4 boincer umatlas      4096 Jul 26 10:05 pilot3
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas 202939195 Jul 26 11:38 HITS.45743349._033525.pool.root.1
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas       529 Jul 26 11:38 boinc_task_state.xml
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas      1040 Jul 26 11:38 memory_monitor_summary.json
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas    360859 Jul 26 11:38 log.45743349._033525.job.log.tgz.1
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas      6843 Jul 26 11:38 init_data.xml
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas      7817 Jul 26 11:38 heartbeat.json
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas        27 Jul 26 11:39 wrapper_checkpoint.txt
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 11:39 boinc_mmap_file
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas       822 Jul 26 11:39 pilotlog.txt
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas        95 Jul 26 11:39 pilot_heartbeat.json
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas    532439 Jul 26 11:39 log.45743349._033525.job.log.1
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas       357 Jul 26 11:39 output.list
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas       620 Jul 26 11:39 runtime_log
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas    911360 Jul 26 11:39 result.tar.gz
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 11:39 runtime_log.err
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas       654 Jul 26 11:39 d2EMDmoQnz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoH0KDmZC6xUm.diag
[2025-07-26 11:39:23] -rw-r--r--. 1 boincer umatlas     21809 Jul 26 11:39 stderr.txt
[2025-07-26 11:39:23] HITS file was successfully produced:
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas 202939195 Jul 26 11:38 shared/HITS.pool.root.1
[2025-07-26 11:39:23]  *** Contents of shared directory: ***
[2025-07-26 11:39:23] total 342792
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas 146596339 Jul 26 10:05 ATLAS.root_0
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 10:05 start_atlas.sh
[2025-07-26 11:39:23] -rw-r--r--. 2 boincer umatlas    542880 Jul 26 10:05 input.tar.gz
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas 202939195 Jul 26 11:38 HITS.pool.root.1
[2025-07-26 11:39:23] -rw-------. 1 boincer umatlas    911360 Jul 26 11:39 result.tar.gz
11:39:24 (780087): run_atlas exited; CPU time 48229.339607
11:39:24 (780087): called boinc_finish(0)

</stderr_txt>
]]>

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