Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:24:30 (341965): wrapper (7.7.26015): starting
07:24:30 (341965): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 07:24:30] Arguments: --nthreads 8
[2025-07-26 07:24:30] Threads: 8
[2025-07-26 07:24:30] Checking for CVMFS
[2025-07-26 07:24:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 07:24:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 07:24:32] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 07:24:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 07:24:34] 2.12.6.0 3531214 16852 283848 148776 2 219 19573248 32935937 23135 16776704 0 17140062 99.729 18621259 9258 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 07:24:34] CVMFS is ok
[2025-07-26 07:24:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 07:24:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 07:24:34] Further information can be found at the LHC@home message board.
[2025-07-26 07:24:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 07:24:34] Checking for apptainer binary...
[2025-07-26 07:24:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 07:24:34] Running /usr/bin/apptainer --version
[2025-07-26 07:24:35] apptainer version 1.4.1-1.el9
[2025-07-26 07:24:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 07:24:36] c6-12-25-2.aglt2.org
[2025-07-26 07:24:36] apptainer works
[2025-07-26 07:24:36] Set ATHENA_PROC_NUMBER=8
[2025-07-26 07:24:36] Set ATHENA_CORE_NUMBER=8
[2025-07-26 07:24:37] Starting ATLAS job with PandaID=6745093574
[2025-07-26 07:24:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:28:29 (779951): wrapper (7.7.26015): starting
10:28:29 (779951): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 10:28:29] Arguments: --nthreads 8
[2025-07-26 10:28:29] Threads: 8
[2025-07-26 10:28:29] This job has been restarted, cleaning up previous attempt
[2025-07-26 10:28:30] Checking for CVMFS
[2025-07-26 10:28:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 10:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 10:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 10:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 10:28:34] 2.12.6.0 3531214 17036 282384 148780 2 95 21323282 32935937 22325 16776704 0 17518373 99.722 19252994 9233 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 10:28:34] CVMFS is ok
[2025-07-26 10:28:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 10:28:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 10:28:34] Further information can be found at the LHC@home message board.
[2025-07-26 10:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 10:28:34] Checking for apptainer binary...
[2025-07-26 10:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 10:28:34] Running /usr/bin/apptainer --version
[2025-07-26 10:28:34] apptainer version 1.4.1-1.el9
[2025-07-26 10:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 10:28:36] c6-12-25-2.aglt2.org
[2025-07-26 10:28:36] apptainer works
[2025-07-26 10:28:36] Set ATHENA_PROC_NUMBER=8
[2025-07-26 10:28:36] Set ATHENA_CORE_NUMBER=8
[2025-07-26 10:28:36] Starting ATLAS job with PandaID=6745093574
[2025-07-26 10:28:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:40:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:40:26] 2025-07-27 09:39:47,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:40:26] 2025-07-27 09:39:47,035 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:40:26] 2025-07-27 09:39:47,090 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:40:26] 2025-07-27 09:39:47,095 | INFO     | sum of square deviations: 445042060079.70087
[2025-07-27 05:40:26] 2025-07-27 09:39:47,482 | INFO     | sum of deviations: 474394667885.50977
[2025-07-27 05:40:26] 2025-07-27 09:39:47,503 | INFO     | mean x: 1753574739.195922
[2025-07-27 05:40:26] 2025-07-27 09:39:47,503 | INFO     | mean y: 2069338.1108156028
[2025-07-27 05:40:26] 2025-07-27 09:39:47,503 | INFO     | -- intersect: -1867161866.3831809
[2025-07-27 05:40:26] 2025-07-27 09:39:47,504 | INFO     | intersect: -1867161866.3831809
[2025-07-27 05:40:26] 2025-07-27 09:39:47,527 | INFO     | chi2: 7.704568208075328
[2025-07-27 05:40:26] 2025-07-27 09:39:47,550 | INFO     | sum of square deviations: 439150181769.06146
[2025-07-27 05:40:26] 2025-07-27 09:39:47,953 | INFO     | monitor loop #2338: job 0:6745093574 is in state 'finished'
[2025-07-27 05:40:26] 2025-07-27 09:39:48,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,065 | INFO     | sum of deviations: 732293954669.7224
[2025-07-27 05:40:26] 2025-07-27 09:39:48,065 | INFO     | mean x: 1753574586.6972396
[2025-07-27 05:40:26] 2025-07-27 09:39:48,066 | INFO     | mean y: 2076007.71682992
[2025-07-27 05:40:26] 2025-07-27 09:39:48,099 | INFO     | -- intersect: -2922053645.897067
[2025-07-27 05:40:26] 2025-07-27 09:39:48,100 | INFO     | intersect: -2922053645.897067
[2025-07-27 05:40:26] 2025-07-27 09:39:48,104 | INFO     | chi2: 4.527814441302754
[2025-07-27 05:40:26] 2025-07-27 09:39:48,108 | INFO     | current chi2=4.527814441302754 (change=41.23208051351857 %)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,115 | INFO     | sum of square deviations: 433310536507.9173
[2025-07-27 05:40:26] 2025-07-27 09:39:48,277 | INFO     | sum of deviations: 753095098747.6224
[2025-07-27 05:40:26] 2025-07-27 09:39:48,278 | INFO     | mean x: 1753574434.1985688
[2025-07-27 05:40:26] 2025-07-27 09:39:48,278 | INFO     | mean y: 2076550.8890876565
[2025-07-27 05:40:26] 2025-07-27 09:39:48,278 | INFO     | -- intersect: -3045641425.9848666
[2025-07-27 05:40:26] 2025-07-27 09:39:48,278 | INFO     | intersect: -3045641425.9848666
[2025-07-27 05:40:26] 2025-07-27 09:39:48,292 | INFO     | chi2: 4.495337985549193
[2025-07-27 05:40:26] 2025-07-27 09:39:48,293 | INFO     | current chi2=4.495337985549193 (change=0.7172656073824628 %)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,293 | INFO     | right removable region: 1117
[2025-07-27 05:40:26] 2025-07-27 09:39:48,333 | INFO     | sum of square deviations: 439149840412.26044
[2025-07-27 05:40:26] 2025-07-27 09:39:48,598 | INFO     | sum of deviations: 219842063581.47528
[2025-07-27 05:40:26] 2025-07-27 09:39:48,603 | INFO     | mean x: 1753574891.6990204
[2025-07-27 05:40:26] 2025-07-27 09:39:48,603 | INFO     | mean y: 2075922.9777382012
[2025-07-27 05:40:26] 2025-07-27 09:39:48,604 | INFO     | -- intersect: -875778256.5293524
[2025-07-27 05:40:26] 2025-07-27 09:39:48,604 | INFO     | intersect: -875778256.5293524
[2025-07-27 05:40:26] 2025-07-27 09:39:48,612 | INFO     | chi2: 5.021655830383466
[2025-07-27 05:40:26] 2025-07-27 09:39:48,613 | INFO     | current chi2=5.021655830383466 (change=34.82235869986643 %)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,620 | INFO     | sum of square deviations: 433309991289.11993
[2025-07-27 05:40:26] 2025-07-27 09:39:48,757 | INFO     | sum of deviations: 93419813921.6943
[2025-07-27 05:40:26] 2025-07-27 09:39:48,758 | INFO     | mean x: 1753575044.2003577
[2025-07-27 05:40:26] 2025-07-27 09:39:48,758 | INFO     | mean y: 2079223.7647584972
[2025-07-27 05:40:26] 2025-07-27 09:39:48,759 | INFO     | -- intersect: -375984189.54254884
[2025-07-27 05:40:26] 2025-07-27 09:39:48,763 | INFO     | intersect: -375984189.54254884
[2025-07-27 05:40:26] 2025-07-27 09:39:48,771 | INFO     | chi2: 4.407632346742455
[2025-07-27 05:40:26] 2025-07-27 09:39:48,772 | INFO     | current chi2=4.407632346742455 (change=12.227510295027983 %)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,772 | INFO     | left removable region: 20
[2025-07-27 05:40:26] 2025-07-27 09:39:48,780 | INFO     | sum of square deviations: 409348379952.30695
[2025-07-27 05:40:26] 2025-07-27 09:39:48,920 | INFO     | sum of deviations: 269416470152.41016
[2025-07-27 05:40:26] 2025-07-27 09:39:48,921 | INFO     | mean x: 1753575013.704649
[2025-07-27 05:40:26] 2025-07-27 09:39:48,921 | INFO     | mean y: 2089280.390154968
[2025-07-27 05:40:26] 2025-07-27 09:39:48,922 | INFO     | -- intersect: -1152042538.562725
[2025-07-27 05:40:26] 2025-07-27 09:39:48,922 | INFO     | intersect: -1152042538.562725
[2025-07-27 05:40:26] 2025-07-27 09:39:48,930 | INFO     | chi2: 0.8212807675312873
[2025-07-27 05:40:26] 2025-07-27 09:39:48,931 | INFO     | -- intersect: -1152042538.562725
[2025-07-27 05:40:26] 2025-07-27 09:39:48,931 | INFO     | current memory leak: 0.66 B/s (using 1097 data points, chi2=0.82)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,933 | INFO     | could have reported an average CPU frequency of 1000 MHz (40 samples)
[2025-07-27 05:40:26] 2025-07-27 09:39:48,938 | INFO     | ..............................
[2025-07-27 05:40:26] 2025-07-27 09:39:48,938 | INFO     | . Timing measurements:
[2025-07-27 05:40:26] 2025-07-27 09:39:48,939 | INFO     | . get job = 0 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,939 | INFO     | . initial setup = 6 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,939 | INFO     | . payload setup = 56 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,939 | INFO     | . stage-in = 0 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,939 | INFO     | . payload execution = 68785 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,940 | INFO     | . stage-out = 11 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,940 | INFO     | . log creation = 2 s
[2025-07-27 05:40:26] 2025-07-27 09:39:48,940 | INFO     | ..............................
[2025-07-27 05:40:26] 2025-07-27 09:39:49,473 | INFO     | 
[2025-07-27 05:40:26] 2025-07-27 09:39:49,473 | INFO     | job summary report
[2025-07-27 05:40:26] 2025-07-27 09:39:49,473 | INFO     | --------------------------------------------------
[2025-07-27 05:40:26] 2025-07-27 09:39:49,474 | INFO     | PanDA job id: 6745093574
[2025-07-27 05:40:26] 2025-07-27 09:39:49,474 | INFO     | task id: 45743349
[2025-07-27 05:40:26] 2025-07-27 09:39:49,474 | INFO     | errors: (none)
[2025-07-27 05:40:26] 2025-07-27 09:39:49,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:40:26] 2025-07-27 09:39:49,475 | INFO     | pilot state: finished 
[2025-07-27 05:40:26] 2025-07-27 09:39:49,475 | INFO     | transexitcode: 0
[2025-07-27 05:40:26] 2025-07-27 09:39:49,475 | INFO     | exeerrorcode: 0
[2025-07-27 05:40:26] 2025-07-27 09:39:49,475 | INFO     | exeerrordiag: 
[2025-07-27 05:40:26] 2025-07-27 09:39:49,475 | INFO     | exitcode: 0
[2025-07-27 05:40:26] 2025-07-27 09:39:49,476 | INFO     | exitmsg: OK
[2025-07-27 05:40:26] 2025-07-27 09:39:49,480 | INFO     | cpuconsumptiontime: 135673 s
[2025-07-27 05:40:26] 2025-07-27 09:39:49,480 | INFO     | nevents: 400
[2025-07-27 05:40:26] 2025-07-27 09:39:49,481 | INFO     | neventsw: 0
[2025-07-27 05:40:26] 2025-07-27 09:39:49,481 | INFO     | pid: 817319
[2025-07-27 05:40:26] 2025-07-27 09:39:49,481 | INFO     | pgrp: 817319
[2025-07-27 05:40:26] 2025-07-27 09:39:49,481 | INFO     | corecount: 8
[2025-07-27 05:40:26] 2025-07-27 09:39:49,482 | INFO     | event service: False
[2025-07-27 05:40:26] 2025-07-27 09:39:49,482 | INFO     | sizes: {0: 2397304, 1: 2397332, 2: 2397503, 3: 2397531, 15: 2397559, 27: 2397587, 38: 2397743, 39: 2398033, 49: 2398061, 68851: 2449148, 68854: 2449147, 68866: 245
[2025-07-27 05:40:26] 2025-07-27 09:39:49,482 | INFO     | --------------------------------------------------
[2025-07-27 05:40:26] 2025-07-27 09:39:49,482 | INFO     | 
[2025-07-27 05:40:26] 2025-07-27 09:39:49,483 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:40:26] 2025-07-27 09:39:49,604 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,605 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,605 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,605 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:40:26] 2025-07-27 09:39:49,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:40:26] 2025-07-27 09:39:49,629 | INFO     | job 6745093574 has completed (purged errors)
[2025-07-27 05:40:26] 2025-07-27 09:39:49,630 | INFO     | overall cleanup function is called
[2025-07-27 05:40:26] 2025-07-27 09:39:50,652 | INFO     | --- collectZombieJob: --- 10, [817319]
[2025-07-27 05:40:26] 2025-07-27 09:39:50,652 | INFO     | zombie collector waiting for pid 817319
[2025-07-27 05:40:26] 2025-07-27 09:39:50,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:40:26] 2025-07-27 09:39:50,653 | INFO     | collected zombie processes
[2025-07-27 05:40:26] 2025-07-27 09:39:50,653 | INFO     | will attempt to kill all subprocesses of pid=817319
[2025-07-27 05:40:26] 2025-07-27 09:39:56,964 | INFO     | process IDs to be killed: [817319] (in reverse order)
[2025-07-27 05:40:26] 2025-07-27 09:39:57,281 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:40:26] 2025-07-27 09:39:57,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:40:26] 2025-07-27 09:39:57,387 | INFO     | did not find any defunct processes belonging to 817319
[2025-07-27 05:40:26] 2025-07-27 09:39:57,431 | INFO     | did not find any defunct processes belonging to 817319
[2025-07-27 05:40:26] 2025-07-27 09:39:57,432 | INFO     | ready for new job
[2025-07-27 05:40:26] 2025-07-27 09:39:57,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:40:26] 2025-07-27 09:39:57,438 | INFO     | ***************************************
[2025-07-27 05:40:26] 2025-07-27 09:39:57,439 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:40:26] 2025-07-27 09:39:57,439 | INFO     | ***************************************
[2025-07-27 05:40:26] 2025-07-27 09:39:57,439 | INFO     | 
[2025-07-27 05:40:26] 2025-07-27 09:39:57,539 | INFO     | architecture information:
[2025-07-27 05:40:26] 2025-07-27 09:39:57,547 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:40:26] 2025-07-27 09:39:57,746 | INFO     | cat /etc/os-release:
[2025-07-27 05:40:26] NAME="CentOS Linux"
[2025-07-27 05:40:26] VERSION="7 (Core)"
[2025-07-27 05:40:26] ID="centos"
[2025-07-27 05:40:26] ID_LIKE="rhel fedora"
[2025-07-27 05:40:26] VERSION_ID="7"
[2025-07-27 05:40:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:40:26] ANSI_COLOR="0;31"
[2025-07-27 05:40:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:40:26] HOME_URL="https://www.centos.org/"
[2025-07-27 05:40:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:40:26] 
[2025-07-27 05:40:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:40:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:40:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:40:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:40:26] 
[2025-07-27 05:40:26] 2025-07-27 09:39:57,747 | INFO     | ***************************************
[2025-07-27 05:40:26] 2025-07-27 09:39:58,251 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:40:26] 2025-07-27 09:39:58,436 | INFO     | sufficient remaining disk space (95422513152 B)
[2025-07-27 05:40:26] 2025-07-27 09:39:58,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:40:26] 2025-07-27 09:39:58,437 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:40:26] 2025-07-27 09:39:58,438 | INFO     | update_server=False
[2025-07-27 05:40:26] 2025-07-27 09:39:58,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:40:26] 2025-07-27 09:39:58,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:40:26] 2025-07-27 09:39:58,629 | INFO     | all data control threads have been joined
[2025-07-27 05:40:26] 2025-07-27 09:39:58,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:40:26] 2025-07-27 09:39:58,731 | INFO     | all job control threads have been joined
[2025-07-27 05:40:26] 2025-07-27 09:39:59,032 | INFO     | all payload control threads have been joined
[2025-07-27 05:40:26] 2025-07-27 09:39:59,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:40:26] 2025-07-27 09:39:59,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:40:26] 2025-07-27 09:39:59,191 | INFO     | aborting loop
[2025-07-27 05:40:26] 2025-07-27 09:39:59,444 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:39:59,635 | INFO     | [data] control thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:39:59,656 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:39:59,742 | INFO     | [job] control thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:39:59,810 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:39:59,814 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,038 | INFO     | [payload] control thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,197 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,235 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,243 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,369 | INFO     | [job] validate thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,396 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,398 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:00,459 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:03,163 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:40:26] 2025-07-27 09:40:03,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541500991296)>', '<ExcThread(monitor, started 140540179900160)>']
[2025-07-27 05:40:26] 2025-07-27 09:40:08,354 | INFO     | all workflow threads have been joined
[2025-07-27 05:40:26] 2025-07-27 09:40:08,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:40:26] 2025-07-27 09:40:08,355 | INFO     | traces error code: 0
[2025-07-27 05:40:26] 2025-07-27 09:40:08,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:40:26] 2025-07-27 09:40:22,961 | INFO     | PID=792399 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 05:40:26] 2025-07-27 09:40:22,962 | INFO     | .. there are 18 such processes running
[2025-07-27 05:40:26] 2025-07-27 09:40:22,964 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:40:26] 2025-07-27 09:40:22,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:40:26] 2025-07-27 09:40:22,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:40:26] 2025-07-27 09:40:22,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:40:26] 2025-07-27 09:40:22,965 | INFO     | [monitor] control thread has ended
[2025-07-27 05:40:26] 2025-07-27 09:40:23,425 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:40:26] 2025-07-27 09:40:23,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:40:26] 2025-07-27 09:40:23,501 [wrapper] pilotpid: 792399
[2025-07-27 05:40:26] 2025-07-27 09:40:23,546 [wrapper] Pilot exit status: 0
[2025-07-27 05:40:26] 2025-07-27 09:40:23,666 [wrapper] pandaids: 6745093574 6745093574
[2025-07-27 05:40:26] 2025-07-27 09:40:25,126 [wrapper] cleanup supervisor_pilot 3540597 792400
[2025-07-27 05:40:26] 2025-07-27 09:40:25,143 [wrapper] Test setup, not cleaning
[2025-07-27 05:40:26] 2025-07-27 09:40:25,150 [wrapper] apfmon messages muted
[2025-07-27 05:40:26] 2025-07-27 09:40:25,157 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:40:26] 2025-07-27 09:40:25,165 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:40:26]  *** Error codes and diagnostics ***
[2025-07-27 05:40:26]     "exeErrorCode": 0,
[2025-07-27 05:40:26]     "exeErrorDiag": "",
[2025-07-27 05:40:26]     "pilotErrorCode": 0,
[2025-07-27 05:40:26]     "pilotErrorDiag": "",
[2025-07-27 05:40:26]  *** Listing of results directory ***
[2025-07-27 05:40:26] total 584304
[2025-07-27 05:40:26] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 22:23 pilot3.tar.gz
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 22:26 queuedata.json
[2025-07-27 05:40:26] -rwx------. 1 boincer umatlas     36292 Jul 25 22:27 runpilot2-wrapper.sh
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas       100 Jul 26 07:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:40:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 07:24 run_atlas
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas       105 Jul 26 07:24 job.xml
[2025-07-27 05:40:26] -rw-r--r--. 3 boincer umatlas 186985594 Jul 26 07:24 EVNT.45743347._001712.pool.root.1
[2025-07-27 05:40:26] -rw-r--r--. 3 boincer umatlas 186985594 Jul 26 07:24 ATLAS.root_0
[2025-07-27 05:40:26] -rw-r--r--. 2 boincer umatlas    542891 Jul 26 07:24 input.tar.gz
[2025-07-27 05:40:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 07:24 start_atlas.sh
[2025-07-27 05:40:26] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 07:24 shared
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas         0 Jul 26 07:24 boinc_lockfile
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 10:28 pandaJob.out
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas    980133 Jul 26 10:29 agis_schedconf.cvmfs.json
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas      6859 Jul 27 05:29 init_data.xml
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas 211635833 Jul 27 05:35 HITS.45743349._030711.pool.root.1
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas       532 Jul 27 05:35 boinc_task_state.xml
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas      1049 Jul 27 05:38 memory_monitor_summary.json
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas   1593052 Jul 27 05:38 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas    734800 Jul 27 05:38 log.45743349._030711.job.log.tgz.1
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas      7850 Jul 27 05:39 heartbeat.json
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 05:39 boinc_mmap_file
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas        29 Jul 27 05:39 wrapper_checkpoint.txt
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas        96 Jul 27 05:40 pilot_heartbeat.json
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas       822 Jul 27 05:40 pilotlog.txt
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas   3690361 Jul 27 05:40 log.45743349._030711.job.log.1
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas       357 Jul 27 05:40 output.list
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas       620 Jul 27 05:40 runtime_log
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas   4444160 Jul 27 05:40 result.tar.gz
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas      8756 Jul 27 05:40 runtime_log.err
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas       791 Jul 27 05:40 7TpLDmAojz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd1QLDmREOvjn.diag
[2025-07-27 05:40:26] -rw-r--r--. 1 boincer umatlas     23250 Jul 27 05:40 stderr.txt
[2025-07-27 05:40:26] HITS file was successfully produced:
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas 211635833 Jul 27 05:35 shared/HITS.pool.root.1
[2025-07-27 05:40:26]  *** Contents of shared directory: ***
[2025-07-27 05:40:26] total 394172
[2025-07-27 05:40:26] -rw-r--r--. 3 boincer umatlas 186985594 Jul 26 07:24 ATLAS.root_0
[2025-07-27 05:40:26] -rw-r--r--. 2 boincer umatlas    542891 Jul 26 07:24 input.tar.gz
[2025-07-27 05:40:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 07:24 start_atlas.sh
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas 211635833 Jul 27 05:35 HITS.pool.root.1
[2025-07-27 05:40:26] -rw-------. 1 boincer umatlas   4444160 Jul 27 05:40 result.tar.gz
05:40:28 (779951): run_atlas exited; CPU time 141400.280146
05:40:28 (779951): called boinc_finish(0)

</stderr_txt>
]]>

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