Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
13:55:18 (2550700): wrapper (7.7.26015): starting
13:55:18 (2550700): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 13:55:18] Arguments: --nthreads 12
[2025-07-26 13:55:18] Threads: 12
[2025-07-26 13:55:18] Checking for CVMFS
[2025-07-26 13:55:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 13:55:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 13:55:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 13:55:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 13:55:18] 2.13.1.0 5295 1722 59712 148786 0 188 4989217 6144000 3668 130560 0 7069352 99.848 835737 1064 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-26 13:55:18] CVMFS is ok
[2025-07-26 13:55:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 13:55:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-26 13:55:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-26 13:55:18] Further information can be found at the LHC@home message board.
[2025-07-26 13:55:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 13:55:18] Checking for apptainer binary...
[2025-07-26 13:55:18] apptainer is not installed, using version from CVMFS
[2025-07-26 13:55:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 13:55:19] XeonFire
[2025-07-26 13:55:19] apptainer works
[2025-07-26 13:55:19] Set ATHENA_PROC_NUMBER=12
[2025-07-26 13:55:19] Set ATHENA_CORE_NUMBER=12
[2025-07-26 13:55:19] Starting ATLAS job with PandaID=6745068554
[2025-07-26 13:55:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:17:05]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:17:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 15:17:05]  is_altstaged=None
[2025-07-26 15:17:05]  is_tar=False
[2025-07-26 15:17:05]  lfn=log.45743349._029765.job.log.tgz.1
[2025-07-26 15:17:05]  mtime=0
[2025-07-26 15:17:05]  protocol_id=None
[2025-07-26 15:17:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 15:17:05]  replicas=None
[2025-07-26 15:17:05]  scope=mc23_13p6TeV
[2025-07-26 15:17:05]  status=None
[2025-07-26 15:17:05]  status_code=0
[2025-07-26 15:17:05]  storage_token=
[2025-07-26 15:17:05]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6745068554/log.45743349._029765.job.log.tgz.1
[2025-07-26 15:17:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/46/log.45743349._029765.job.log.tgz.1
[2025-07-26 15:17:05]  workdir=None
[2025-07-26 15:17:05] ]
[2025-07-26 15:17:05] 2025-07-26 20:16:26,474 | INFO     | transferring file log.45743349._029765.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6745068554/log.45743349._029765.job.log.tgz.1 to /var/lib/boinc
[2025-07-26 15:17:05] 2025-07-26 20:16:26,475 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6745068554/log.45743349._029765.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.457433
[2025-07-26 15:17:05] 2025-07-26 20:16:26,498 | INFO     | adding to output.list: log.45743349._029765.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/46/log.45743349._029765.job.log.tg
[2025-07-26 15:17:05] 2025-07-26 20:16:26,499 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:17:05] 2025-07-26 20:16:26,499 | INFO     | summary of transferred files:
[2025-07-26 15:17:05] 2025-07-26 20:16:26,499 | INFO     |  -- lfn=log.45743349._029765.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:17:05] 2025-07-26 20:16:26,499 | INFO     | stage-out finished correctly
[2025-07-26 15:17:05] 2025-07-26 20:16:26,898 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:17:05] 2025-07-26 20:16:28,638 | INFO     | job 6745068554 has state=finished
[2025-07-26 15:17:05] 2025-07-26 20:16:28,638 | INFO     | preparing for final server update for job 6745068554 in state='finished'
[2025-07-26 15:17:05] 2025-07-26 20:16:28,639 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:17:05] 2025-07-26 20:16:28,639 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:17:05] 2025-07-26 20:16:28,639 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:17:05] 2025-07-26 20:16:28,639 | INFO     | job 6745068554 has finished - writing final server update
[2025-07-26 15:17:05] 2025-07-26 20:16:28,640 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:17:05] 2025-07-26 20:16:28,641 | INFO     | executing command: lscpu
[2025-07-26 15:17:05] 2025-07-26 20:16:28,703 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:17:05] 2025-07-26 20:16:31,212 | WARNING  | process 2561585 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 15:17:05] 2025-07-26 20:16:31,212 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6745068554/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:17:05] 2025-07-26 20:16:31,615 | INFO     | number of running child processes to parent process 2561585: 1
[2025-07-26 15:17:05] 2025-07-26 20:16:31,616 | INFO     | maximum number of monitored processes: 6
[2025-07-26 15:17:05] 2025-07-26 20:16:33,095 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 15:17:05] 2025-07-26 20:16:33,107 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2460.5392656249996
[2025-07-26 15:17:05] 2025-07-26 20:16:33,120 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6745068554/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,121 | INFO     | extracted standard info from prmon json
[2025-07-26 15:17:05] 2025-07-26 20:16:33,121 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:17:05] 2025-07-26 20:16:33,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:17:05] 2025-07-26 20:16:33,122 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:17:05] 2025-07-26 20:16:33,122 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:17:05] 2025-07-26 20:16:33,124 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:17:05] 2025-07-26 20:16:33,124 | INFO     | sum of square deviations: 115715658.0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,125 | INFO     | sum of deviations: -1212339681.0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,125 | INFO     | mean x: 1753558639.5
[2025-07-26 15:17:05] 2025-07-26 20:16:33,125 | INFO     | mean y: 2695557.527777778
[2025-07-26 15:17:05] 2025-07-26 20:16:33,125 | INFO     | -- intersect: 18374528361.919937
[2025-07-26 15:17:05] 2025-07-26 20:16:33,126 | INFO     | intersect: 18374528361.919937
[2025-07-26 15:17:05] 2025-07-26 20:16:33,126 | INFO     | chi2: 0.03340892918866297
[2025-07-26 15:17:05] 2025-07-26 20:16:33,126 | INFO     | -- intersect: 18374528361.919937
[2025-07-26 15:17:05] 2025-07-26 20:16:33,126 | INFO     | current memory leak: -10.48 B/s (using 72 data points, chi2=0.03)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,127 | INFO     | could have reported an average CPU frequency of 2421 MHz (6 samples)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,127 | INFO     | ..............................
[2025-07-26 15:17:05] 2025-07-26 20:16:33,127 | INFO     | . Timing measurements:
[2025-07-26 15:17:05] 2025-07-26 20:16:33,127 | INFO     | . get job = 0 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,127 | INFO     | . initial setup = 10 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | . payload setup = 8 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | . stage-in = 0 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | . payload execution = 4817 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | . stage-out = 0 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | . log creation = 0 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,128 | INFO     | ..............................
[2025-07-26 15:17:05] 2025-07-26 20:16:33,244 | INFO     | 
[2025-07-26 15:17:05] 2025-07-26 20:16:33,244 | INFO     | job summary report
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | --------------------------------------------------
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | PanDA job id: 6745068554
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | task id: 45743349
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | errors: (none)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | pilot state: finished 
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | transexitcode: 0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,245 | INFO     | exeerrorcode: 0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | exeerrordiag: 
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | exitcode: 0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | exitmsg: OK
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | cpuconsumptiontime: 52738 s
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | nevents: 400
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | neventsw: 0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | pid: 2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:33,246 | INFO     | pgrp: 2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | corecount: 12
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | event service: False
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | sizes: {0: 2397482, 5: 2397744, 11: 2397800, 4829: 2423949, 4831: 2432961, 4832: 2433017, 4838: 2433339}
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | --------------------------------------------------
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | 
[2025-07-26 15:17:05] 2025-07-26 20:16:33,247 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-07-26 15:17:05] 2025-07-26 20:16:33,271 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:17:05] 2025-07-26 20:16:33,274 | INFO     | job 6745068554 has completed (purged errors)
[2025-07-26 15:17:05] 2025-07-26 20:16:33,274 | INFO     | overall cleanup function is called
[2025-07-26 15:17:05] 2025-07-26 20:16:34,283 | INFO     | --- collectZombieJob: --- 10, [2561585]
[2025-07-26 15:17:05] 2025-07-26 20:16:34,284 | INFO     | zombie collector waiting for pid 2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:34,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:17:05] 2025-07-26 20:16:34,284 | INFO     | collected zombie processes
[2025-07-26 15:17:05] 2025-07-26 20:16:34,284 | INFO     | will attempt to kill all subprocesses of pid=2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:34,686 | INFO     | process IDs to be killed: [2561585] (in reverse order)
[2025-07-26 15:17:05] 2025-07-26 20:16:34,804 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:17:05] 2025-07-26 20:16:34,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:17:05] 2025-07-26 20:16:34,814 | INFO     | did not find any defunct processes belonging to 2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:34,821 | INFO     | did not find any defunct processes belonging to 2561585
[2025-07-26 15:17:05] 2025-07-26 20:16:34,822 | INFO     | ready for new job
[2025-07-26 15:17:05] 2025-07-26 20:16:34,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:17:05] 2025-07-26 20:16:34,824 | INFO     | ***************************************
[2025-07-26 15:17:05] 2025-07-26 20:16:34,824 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:17:05] 2025-07-26 20:16:34,824 | INFO     | ***************************************
[2025-07-26 15:17:05] 2025-07-26 20:16:34,824 | INFO     | 
[2025-07-26 15:17:05] 2025-07-26 20:16:34,828 | INFO     | architecture information:
[2025-07-26 15:17:05] 2025-07-26 20:16:34,828 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:17:05] 2025-07-26 20:16:34,846 | INFO     | cat /etc/os-release:
[2025-07-26 15:17:05] NAME="CentOS Linux"
[2025-07-26 15:17:05] VERSION="7 (Core)"
[2025-07-26 15:17:05] ID="centos"
[2025-07-26 15:17:05] ID_LIKE="rhel fedora"
[2025-07-26 15:17:05] VERSION_ID="7"
[2025-07-26 15:17:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:17:05] ANSI_COLOR="0;31"
[2025-07-26 15:17:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:17:05] HOME_URL="https://www.centos.org/"
[2025-07-26 15:17:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:17:05] 
[2025-07-26 15:17:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:17:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:17:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:17:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:17:05] 
[2025-07-26 15:17:05] 2025-07-26 20:16:34,846 | INFO     | ***************************************
[2025-07-26 15:17:05] 2025-07-26 20:16:35,349 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-07-26 15:17:05] 2025-07-26 20:16:35,368 | INFO     | sufficient remaining disk space (1820900458496 B)
[2025-07-26 15:17:05] 2025-07-26 20:16:35,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:17:05] 2025-07-26 20:16:35,368 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:17:05] 2025-07-26 20:16:35,369 | INFO     | update_server=False
[2025-07-26 15:17:05] 2025-07-26 20:16:35,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:17:05] 2025-07-26 20:16:35,369 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:17:05] 2025-07-26 20:16:35,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:17:05] 2025-07-26 20:16:35,370 | INFO     | aborting loop
[2025-07-26 15:17:05] 2025-07-26 20:16:35,452 | INFO     | all data control threads have been joined
[2025-07-26 15:17:05] 2025-07-26 20:16:35,562 | INFO     | all payload control threads have been joined
[2025-07-26 15:17:05] 2025-07-26 20:16:35,795 | INFO     | all job control threads have been joined
[2025-07-26 15:17:05] 2025-07-26 20:16:36,370 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,375 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,457 | INFO     | [data] control thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,568 | INFO     | [payload] control thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,767 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,801 | INFO     | [job] control thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:36,812 | INFO     | [job] validate thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,146 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,375 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,405 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,471 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:17:05] 2025-07-26 20:16:37,545 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,597 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:37,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:38,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:17:05] 2025-07-26 20:16:39,259 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:41,521 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:17:05] 2025-07-26 20:16:42,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132719897564992)>', '<ExcThread(monitor, started 132719363213056)>']
[2025-07-26 15:17:05] 2025-07-26 20:16:47,750 | INFO     | all workflow threads have been joined
[2025-07-26 15:17:05] 2025-07-26 20:16:47,750 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:17:05] 2025-07-26 20:16:47,750 | INFO     | traces error code: 0
[2025-07-26 15:17:05] 2025-07-26 20:16:47,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:17:05] 2025-07-26 20:17:05,145 | INFO     | PID=2554632 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 15:17:05] 2025-07-26 20:17:05,145 | INFO     | .. there are 5 such processes running
[2025-07-26 15:17:05] 2025-07-26 20:17:05,145 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:17:05] 2025-07-26 20:17:05,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:17:05] 2025-07-26 20:17:05,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:17:05] 2025-07-26 20:17:05,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:17:05] 2025-07-26 20:17:05,146 | INFO     | [monitor] control thread has ended
[2025-07-26 15:17:05] 2025-07-26 20:17:05,267 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:17:05] 2025-07-26 20:17:05,271 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:17:05] 2025-07-26 20:17:05,274 [wrapper] pilotpid: 2554632
[2025-07-26 15:17:05] 2025-07-26 20:17:05,277 [wrapper] Pilot exit status: 0
[2025-07-26 15:17:05] 2025-07-26 20:17:05,288 [wrapper] pandaids: 6745068554
[2025-07-26 15:17:05] 2025-07-26 20:17:05,349 [wrapper] cleanup supervisor_pilot 2675308 2554633
[2025-07-26 15:17:05] 2025-07-26 20:17:05,352 [wrapper] Test setup, not cleaning
[2025-07-26 15:17:05] 2025-07-26 20:17:05,356 [wrapper] apfmon messages muted
[2025-07-26 15:17:05] 2025-07-26 20:17:05,359 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:17:05] 2025-07-26 20:17:05,362 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:17:05]  *** Error codes and diagnostics ***
[2025-07-26 15:17:05]     "exeErrorCode": 0,
[2025-07-26 15:17:05]     "exeErrorDiag": "",
[2025-07-26 15:17:05]     "pilotErrorCode": 0,
[2025-07-26 15:17:05]     "pilotErrorDiag": "",
[2025-07-26 15:17:05]  *** Listing of results directory ***
[2025-07-26 15:17:05] total 437736
[2025-07-26 15:17:05] -rw-r--r-- 1 mark mark    530466 Jul 25 19:19 pilot3.tar.gz
[2025-07-26 15:17:05] -rwx------ 1 mark mark     36292 Jul 25 19:50 runpilot2-wrapper.sh
[2025-07-26 15:17:05] -rw-r--r-- 1 mark mark      5112 Jul 25 19:50 queuedata.json
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark       100 Jul 26 13:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:17:05] -rwxr-xr-x 1 mark mark      7986 Jul 26 13:55 run_atlas
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark       105 Jul 26 13:55 job.xml
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark 228273943 Jul 26 13:55 EVNT.45743347._001665.pool.root.1
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark     15095 Jul 26 13:55 start_atlas.sh
[2025-07-26 15:17:05] drwxrwx--x 2 mark mark      4096 Jul 26 13:55 shared
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark    542895 Jul 26 13:55 input.tar.gz
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark         0 Jul 26 13:55 boinc_setup_complete
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark      9229 Jul 26 13:55 init_data.xml
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark         0 Jul 26 13:55 boinc_lockfile
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark      2563 Jul 26 13:55 pandaJob.out
[2025-07-26 15:17:05] -rw------- 1 mark mark    980125 Jul 26 13:55 agis_schedconf.cvmfs.json
[2025-07-26 15:17:05] -rw------- 1 mark mark   1593052 Jul 26 13:55 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:17:05] drwx------ 4 mark mark      4096 Jul 26 13:55 pilot3
[2025-07-26 15:17:05] -rw------- 1 mark mark 214390151 Jul 26 15:15 HITS.45743349._029765.pool.root.1
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark       529 Jul 26 15:15 boinc_task_state.xml
[2025-07-26 15:17:05] -rw------- 1 mark mark      1032 Jul 26 15:16 memory_monitor_summary.json
[2025-07-26 15:17:05] -rw------- 1 mark mark        95 Jul 26 15:16 pilot_heartbeat.json
[2025-07-26 15:17:05] -rw------- 1 mark mark    372612 Jul 26 15:16 log.45743349._029765.job.log.tgz.1
[2025-07-26 15:17:05] -rw------- 1 mark mark      7787 Jul 26 15:16 heartbeat.json
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark      8192 Jul 26 15:17 boinc_mmap_file
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark        27 Jul 26 15:17 wrapper_checkpoint.txt
[2025-07-26 15:17:05] -rw------- 1 mark mark       822 Jul 26 15:17 pilotlog.txt
[2025-07-26 15:17:05] -rw------- 1 mark mark    477416 Jul 26 15:17 log.45743349._029765.job.log.1
[2025-07-26 15:17:05] -rw------- 1 mark mark       357 Jul 26 15:17 output.list
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark       620 Jul 26 15:17 runtime_log
[2025-07-26 15:17:05] -rw------- 1 mark mark    870400 Jul 26 15:17 result.tar.gz
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark      8716 Jul 26 15:17 runtime_log.err
[2025-07-26 15:17:05] -rw------- 1 mark mark       645 Jul 26 15:17 DNLKDmlIiz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIqzKDmpSOcXm.diag
[2025-07-26 15:17:05] -rw-rw-r-- 1 mark mark     21583 Jul 26 15:17 stderr.txt
[2025-07-26 15:17:05] HITS file was successfully produced:
[2025-07-26 15:17:05] -rw------- 1 mark mark 214390151 Jul 26 15:15 shared/HITS.pool.root.1
[2025-07-26 15:17:05]  *** Contents of shared directory: ***
[2025-07-26 15:17:05] total 433696
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark 228273943 Jul 26 13:55 ATLAS.root_0
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark     15095 Jul 26 13:55 start_atlas.sh
[2025-07-26 15:17:05] -rw-r--r-- 2 mark mark    542895 Jul 26 13:55 input.tar.gz
[2025-07-26 15:17:05] -rw------- 1 mark mark 214390151 Jul 26 15:15 HITS.pool.root.1
[2025-07-26 15:17:05] -rw------- 1 mark mark    870400 Jul 26 15:17 result.tar.gz
15:17:06 (2550700): run_atlas exited; CPU time 52907.639035
15:17:06 (2550700): called boinc_finish(0)

</stderr_txt>
]]>

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