Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:35:49 (2651484): wrapper (7.7.26015): starting
06:35:49 (2651484): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 06:35:49] Arguments: --nthreads 8
[2025-07-26 06:35:49] Threads: 8
[2025-07-26 06:35:49] Checking for CVMFS
[2025-07-26 06:35:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 06:35:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 06:35:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 06:35:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 06:35:49] 2.13.1.0 116762 6841 203576 148774 1 188 34526411 40960000 13740 16776704 0 90770359 99.999 276036 36421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 06:35:49] CVMFS is ok
[2025-07-26 06:35:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 06:35:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 06:35:49] Further information can be found at the LHC@home message board.
[2025-07-26 06:35:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 06:35:49] Checking for apptainer binary...
[2025-07-26 06:35:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 06:35:49] Running /usr/bin/apptainer --version
[2025-07-26 06:35:49] apptainer version 1.4.1-1.el9
[2025-07-26 06:35:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 06:35:49] c-208-39.aglt2.org
[2025-07-26 06:35:49] apptainer works
[2025-07-26 06:35:49] Set ATHENA_PROC_NUMBER=8
[2025-07-26 06:35:49] Set ATHENA_CORE_NUMBER=8
[2025-07-26 06:35:49] Starting ATLAS job with PandaID=6745096099
[2025-07-26 06:35:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 07:34:40]  *** The last 200 lines of the pilot log: ***
[2025-07-26 07:34:40]  lfn=log.45743349._032202.job.log.tgz.1
[2025-07-26 07:34:40]  mtime=0
[2025-07-26 07:34:40]  protocol_id=None
[2025-07-26 07:34:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 07:34:40]  replicas=None
[2025-07-26 07:34:40]  scope=mc23_13p6TeV
[2025-07-26 07:34:40]  status=None
[2025-07-26 07:34:40]  status_code=0
[2025-07-26 07:34:40]  storage_token=
[2025-07-26 07:34:40]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6745096099/log.45743349._032202.job.log.tgz.1
[2025-07-26 07:34:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/d1/log.45743349._032202.job.log.tgz.1
[2025-07-26 07:34:40]  workdir=None
[2025-07-26 07:34:40] ]
[2025-07-26 07:34:40] 2025-07-26 11:34:03,906 | INFO     | transferring file log.45743349._032202.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6745096099/log.45743349._032202.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 07:34:40] 2025-07-26 11:34:03,906 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6745096099/log.45743349._032202.job.log.tgz.1 /tmp/boinchome/slots/7/log.45743349._032202.job
[2025-07-26 07:34:40] 2025-07-26 11:34:03,922 | INFO     | adding to output.list: log.45743349._032202.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/d1/log.45743349._032202.job.log.tg
[2025-07-26 07:34:40] 2025-07-26 11:34:03,923 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 07:34:40] 2025-07-26 11:34:03,923 | INFO     | summary of transferred files:
[2025-07-26 07:34:40] 2025-07-26 11:34:03,923 | INFO     |  -- lfn=log.45743349._032202.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 07:34:40] 2025-07-26 11:34:03,923 | INFO     | stage-out finished correctly
[2025-07-26 07:34:40] 2025-07-26 11:34:03,976 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 07:34:40] 2025-07-26 11:34:04,030 | INFO     | job 6745096099 has state=finished
[2025-07-26 07:34:40] 2025-07-26 11:34:04,030 | INFO     | preparing for final server update for job 6745096099 in state='finished'
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | this job has now completed (state=finished)
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | log transfer has been attempted: DONE
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | job 6745096099 has finished - writing final server update
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | total number of processed events: 400 (read)
[2025-07-26 07:34:40] 2025-07-26 11:34:04,031 | INFO     | executing command: lscpu
[2025-07-26 07:34:40] 2025-07-26 11:34:04,088 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 07:34:40] 2025-07-26 11:34:07,536 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 07:34:40] 2025-07-26 11:34:07,541 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3774.1660703125
[2025-07-26 07:34:40] 2025-07-26 11:34:07,554 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6745096099/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,554 | INFO     | extracted standard info from prmon json
[2025-07-26 07:34:40] 2025-07-26 11:34:07,554 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 07:34:40] 2025-07-26 11:34:07,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 07:34:40] 2025-07-26 11:34:07,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 07:34:40] 2025-07-26 11:34:07,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | fitting pss+swap vs Time
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | sum of square deviations: 38744912.5
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | sum of deviations: -345632313.49999994
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | mean x: 1753527982.5
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | mean y: 2527342.54
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | -- intersect: 15645250329.163403
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | intersect: 15645250329.163403
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | chi2: 0.0005221668161044679
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | -- intersect: 15645250329.163403
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | current memory leak: -8.92 B/s (using 50 data points, chi2=0.00)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,556 | INFO     | could have reported an average CPU frequency of 3786 MHz (5 samples)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | ..............................
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . Timing measurements:
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . get job = 0 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . initial setup = 2 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . payload setup = 5 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . stage-in = 0 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . payload execution = 3461 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . stage-out = 0 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | . log creation = 0 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,557 | INFO     | ..............................
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | 
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | job summary report
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | --------------------------------------------------
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | PanDA job id: 6745096099
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | task id: 45743349
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | errors: (none)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | pilot state: finished 
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | transexitcode: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | exeerrorcode: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:07,762 | INFO     | exeerrordiag: 
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | exitcode: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | exitmsg: OK
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | cpuconsumptiontime: 25410 s
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | nevents: 400
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | neventsw: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | pid: 2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | pgrp: 2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | corecount: 8
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | event service: False
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | sizes: {0: 2397422, 4: 2397684, 11: 2397712, 3469: 2423415, 3470: 2432469, 3474: 2432639}
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | --------------------------------------------------
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | 
[2025-07-26 07:34:40] 2025-07-26 11:34:07,763 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-07-26 07:34:40] 2025-07-26 11:34:07,782 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,782 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,782 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | job 6745096099 has completed (purged errors)
[2025-07-26 07:34:40] 2025-07-26 11:34:07,783 | INFO     | overall cleanup function is called
[2025-07-26 07:34:40] 2025-07-26 11:34:08,789 | INFO     | --- collectZombieJob: --- 10, [2662642]
[2025-07-26 07:34:40] 2025-07-26 11:34:08,789 | INFO     | zombie collector waiting for pid 2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:08,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 07:34:40] 2025-07-26 11:34:08,789 | INFO     | collected zombie processes
[2025-07-26 07:34:40] 2025-07-26 11:34:08,790 | INFO     | will attempt to kill all subprocesses of pid=2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:09,332 | INFO     | process IDs to be killed: [2662642] (in reverse order)
[2025-07-26 07:34:40] 2025-07-26 11:34:09,458 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 07:34:40] 2025-07-26 11:34:09,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 07:34:40] 2025-07-26 11:34:09,496 | INFO     | did not find any defunct processes belonging to 2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:09,533 | INFO     | did not find any defunct processes belonging to 2662642
[2025-07-26 07:34:40] 2025-07-26 11:34:09,533 | INFO     | ready for new job
[2025-07-26 07:34:40] 2025-07-26 11:34:09,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 07:34:40] 2025-07-26 11:34:09,535 | INFO     | ***************************************
[2025-07-26 07:34:40] 2025-07-26 11:34:09,536 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 07:34:40] 2025-07-26 11:34:09,536 | INFO     | ***************************************
[2025-07-26 07:34:40] 2025-07-26 11:34:09,536 | INFO     | 
[2025-07-26 07:34:40] 2025-07-26 11:34:09,542 | INFO     | architecture information:
[2025-07-26 07:34:40] 2025-07-26 11:34:09,542 | INFO     | executing command: cat /etc/os-release
[2025-07-26 07:34:40] 2025-07-26 11:34:09,557 | INFO     | cat /etc/os-release:
[2025-07-26 07:34:40] NAME="CentOS Linux"
[2025-07-26 07:34:40] VERSION="7 (Core)"
[2025-07-26 07:34:40] ID="centos"
[2025-07-26 07:34:40] ID_LIKE="rhel fedora"
[2025-07-26 07:34:40] VERSION_ID="7"
[2025-07-26 07:34:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 07:34:40] ANSI_COLOR="0;31"
[2025-07-26 07:34:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 07:34:40] HOME_URL="https://www.centos.org/"
[2025-07-26 07:34:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 07:34:40] 
[2025-07-26 07:34:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 07:34:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 07:34:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 07:34:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 07:34:40] 
[2025-07-26 07:34:40] 2025-07-26 11:34:09,557 | INFO     | ***************************************
[2025-07-26 07:34:40] 2025-07-26 11:34:09,639 | WARNING  | process 2662642 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 07:34:40] 2025-07-26 11:34:09,894 | INFO     | using path: /tmp/boinchome/slots/7/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 07:34:40] 2025-07-26 11:34:09,895 | INFO     | using path: /tmp/boinchome/slots/7/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 07:34:40] 2025-07-26 11:34:10,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-07-26 07:34:40] 2025-07-26 11:34:10,078 | INFO     | sufficient remaining disk space (167134625792 B)
[2025-07-26 07:34:40] 2025-07-26 11:34:10,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 07:34:40] 2025-07-26 11:34:10,078 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 07:34:40] 2025-07-26 11:34:10,078 | INFO     | update_server=False
[2025-07-26 07:34:40] 2025-07-26 11:34:10,078 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 07:34:40] 2025-07-26 11:34:10,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 07:34:40] 2025-07-26 11:34:10,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 07:34:40] 2025-07-26 11:34:10,251 | INFO     | number of running child processes to parent process 2662642: 1
[2025-07-26 07:34:40] 2025-07-26 11:34:10,252 | INFO     | maximum number of monitored processes: 6
[2025-07-26 07:34:40] 2025-07-26 11:34:10,252 | INFO     | aborting job monitoring since job object (job id=6745096099) has expired
[2025-07-26 07:34:40] 2025-07-26 11:34:10,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 07:34:40] 2025-07-26 11:34:10,252 | INFO     | will abort loop
[2025-07-26 07:34:40] 2025-07-26 11:34:10,913 | INFO     | all data control threads have been joined
[2025-07-26 07:34:40] 2025-07-26 11:34:11,084 | INFO     | [job] retrieve thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,214 | INFO     | all job control threads have been joined
[2025-07-26 07:34:40] 2025-07-26 11:34:11,257 | INFO     | [job] job monitor thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,317 | INFO     | [data] copytool_in thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,361 | INFO     | [payload] failed_post thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,444 | INFO     | all payload control threads have been joined
[2025-07-26 07:34:40] 2025-07-26 11:34:11,857 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,895 | INFO     | [job] validate thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:11,918 | INFO     | [data] control thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,008 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,083 | INFO     | [data] copytool_out thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,194 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,215 | INFO     | [job] control thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,400 | INFO     | [payload] validate_post thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,450 | INFO     | [payload] control thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:12,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 07:34:40] 2025-07-26 11:34:13,625 | INFO     | [job] queue monitor thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:14,083 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:20,594 | INFO     | job.realtimelogging is not enabled
[2025-07-26 07:34:40] 2025-07-26 11:34:21,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 07:34:40] 2025-07-26 11:34:23,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886452799296)>', '<ExcThread(monitor, started 139885600040704)>']
[2025-07-26 07:34:40] 2025-07-26 11:34:28,453 | INFO     | all workflow threads have been joined
[2025-07-26 07:34:40] 2025-07-26 11:34:28,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 07:34:40] 2025-07-26 11:34:28,453 | INFO     | traces error code: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:28,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 07:34:40] 2025-07-26 11:34:40,107 | INFO     | PID=2655212 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 07:34:40] 2025-07-26 11:34:40,107 | INFO     | .. there are 16 such processes running
[2025-07-26 07:34:40] 2025-07-26 11:34:40,107 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 07:34:40] 2025-07-26 11:34:40,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 07:34:40] 2025-07-26 11:34:40,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 07:34:40] 2025-07-26 11:34:40,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 07:34:40] 2025-07-26 11:34:40,108 | INFO     | [monitor] control thread has ended
[2025-07-26 07:34:40] 2025-07-26 11:34:40,200 [wrapper] ==== pilot stdout END ====
[2025-07-26 07:34:40] 2025-07-26 11:34:40,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 07:34:40] 2025-07-26 11:34:40,205 [wrapper] pilotpid: 2655212
[2025-07-26 07:34:40] 2025-07-26 11:34:40,207 [wrapper] Pilot exit status: 0
[2025-07-26 07:34:40] 2025-07-26 11:34:40,216 [wrapper] pandaids: 6745096099
[2025-07-26 07:34:40] 2025-07-26 11:34:40,302 [wrapper] cleanup supervisor_pilot 2908341 2655213
[2025-07-26 07:34:40] 2025-07-26 11:34:40,304 [wrapper] Test setup, not cleaning
[2025-07-26 07:34:40] 2025-07-26 11:34:40,307 [wrapper] apfmon messages muted
[2025-07-26 07:34:40] 2025-07-26 11:34:40,309 [wrapper] ==== wrapper stdout END ====
[2025-07-26 07:34:40] 2025-07-26 11:34:40,312 [wrapper] ==== wrapper stderr END ====
[2025-07-26 07:34:40]  *** Error codes and diagnostics ***
[2025-07-26 07:34:40]     "exeErrorCode": 0,
[2025-07-26 07:34:40]     "exeErrorDiag": "",
[2025-07-26 07:34:40]     "pilotErrorCode": 0,
[2025-07-26 07:34:40]     "pilotErrorDiag": "",
[2025-07-26 07:34:40]  *** Listing of results directory ***
[2025-07-26 07:34:40] total 357116
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 00:24 pilot3.tar.gz
[2025-07-26 07:34:40] -rwx------. 1 boincer umatlas     36292 Jul 26 00:39 runpilot2-wrapper.sh
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 00:39 queuedata.json
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas       100 Jul 26 06:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 07:34:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 06:35 run_atlas
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas       105 Jul 26 06:35 job.xml
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas 148572653 Jul 26 06:35 EVNT.45743347._001810.pool.root.1
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 06:35 start_atlas.sh
[2025-07-26 07:34:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 06:35 shared
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas    542888 Jul 26 06:35 input.tar.gz
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas         0 Jul 26 06:35 boinc_lockfile
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas      2561 Jul 26 06:35 pandaJob.out
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas    980133 Jul 26 06:35 agis_schedconf.cvmfs.json
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas   1593052 Jul 26 06:35 agis_ddmendpoints.agis.ALL.json
[2025-07-26 07:34:40] drwx------. 4 boincer umatlas      4096 Jul 26 06:35 pilot3
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 07:29 init_data.xml
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas 211967198 Jul 26 07:33 HITS.45743349._032202.pool.root.1
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas       530 Jul 26 07:33 boinc_task_state.xml
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas      1039 Jul 26 07:34 memory_monitor_summary.json
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas    280411 Jul 26 07:34 log.45743349._032202.job.log.tgz.1
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas      7763 Jul 26 07:34 heartbeat.json
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas        95 Jul 26 07:34 pilot_heartbeat.json
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas        27 Jul 26 07:34 wrapper_checkpoint.txt
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 07:34 boinc_mmap_file
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas       823 Jul 26 07:34 pilotlog.txt
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas    353946 Jul 26 07:34 log.45743349._032202.job.log.1
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas       357 Jul 26 07:34 output.list
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas       620 Jul 26 07:34 runtime_log
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas    655360 Jul 26 07:34 result.tar.gz
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 07:34 runtime_log.err
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas       651 Jul 26 07:34 DsPMDmsrlz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuERLDm6TaZkm.diag
[2025-07-26 07:34:40] -rw-r--r--. 1 boincer umatlas     21634 Jul 26 07:34 stderr.txt
[2025-07-26 07:34:40] HITS file was successfully produced:
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas 211967198 Jul 26 07:33 shared/HITS.pool.root.1
[2025-07-26 07:34:40]  *** Contents of shared directory: ***
[2025-07-26 07:34:40] total 353288
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas 148572653 Jul 26 06:35 ATLAS.root_0
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 06:35 start_atlas.sh
[2025-07-26 07:34:40] -rw-r--r--. 2 boincer umatlas    542888 Jul 26 06:35 input.tar.gz
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas 211967198 Jul 26 07:33 HITS.pool.root.1
[2025-07-26 07:34:40] -rw-------. 1 boincer umatlas    655360 Jul 26 07:34 result.tar.gz
07:34:41 (2651484): run_atlas exited; CPU time 25503.313842
07:34:41 (2651484): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN