Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:49:05 (2732633): wrapper (7.7.26015): starting
09:49:05 (2732633): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 09:49:05] Arguments: --nthreads 8
[2025-07-26 09:49:05] Threads: 8
[2025-07-26 09:49:05] Checking for CVMFS
[2025-07-26 09:49:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 09:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 09:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 09:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 09:49:07] 2.13.0.0 317867 25758 214652 148778 3 333 38699016 40960000 18544 16776704 3 194402532 99.617 242862687 30170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 09:49:07] CVMFS is ok
[2025-07-26 09:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 09:49:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 09:49:07] Further information can be found at the LHC@home message board.
[2025-07-26 09:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 09:49:07] Checking for apptainer binary...
[2025-07-26 09:49:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 09:49:07] Running /usr/bin/apptainer --version
[2025-07-26 09:49:07] apptainer version 1.4.1-1.el9
[2025-07-26 09:49:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 09:49:08] c8-6-11.aglt2.org
[2025-07-26 09:49:08] apptainer works
[2025-07-26 09:49:08] Set ATHENA_PROC_NUMBER=8
[2025-07-26 09:49:08] Set ATHENA_CORE_NUMBER=8
[2025-07-26 09:49:08] Starting ATLAS job with PandaID=6745068547
[2025-07-26 09:49:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 11:16:03]  *** The last 200 lines of the pilot log: ***
[2025-07-26 11:16:03] 2025-07-26 15:15:03,751 | INFO     | adding to output.list: log.45743349._029758.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/46/log.45743349._029758.job.log.tg
[2025-07-26 11:16:03] 2025-07-26 15:15:03,751 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 11:16:03] 2025-07-26 15:15:03,751 | INFO     | summary of transferred files:
[2025-07-26 11:16:03] 2025-07-26 15:15:03,752 | INFO     |  -- lfn=log.45743349._029758.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 11:16:03] 2025-07-26 15:15:03,752 | INFO     | stage-out finished correctly
[2025-07-26 11:16:03] 2025-07-26 15:15:03,804 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 11:16:03] 2025-07-26 15:15:03,848 | INFO     | job 6745068547 has state=finished
[2025-07-26 11:16:03] 2025-07-26 15:15:03,848 | INFO     | preparing for final server update for job 6745068547 in state='finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:03,849 | INFO     | this job has now completed (state=finished)
[2025-07-26 11:16:03] 2025-07-26 15:15:03,849 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 11:16:03] 2025-07-26 15:15:03,849 | INFO     | log transfer has been attempted: DONE
[2025-07-26 11:16:03] 2025-07-26 15:15:03,849 | INFO     | job 6745068547 has finished - writing final server update
[2025-07-26 11:16:03] 2025-07-26 15:15:03,849 | INFO     | total number of processed events: 400 (read)
[2025-07-26 11:16:03] 2025-07-26 15:15:03,859 | INFO     | executing command: lscpu
[2025-07-26 11:16:03] 2025-07-26 15:15:03,961 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 11:16:03] 2025-07-26 15:15:07,140 | WARNING  | process 2787041 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 11:16:03] 2025-07-26 15:15:07,140 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745068547/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:16:03] 2025-07-26 15:15:07,692 | INFO     | number of running child processes to parent process 2787041: 1
[2025-07-26 11:16:03] 2025-07-26 15:15:07,692 | INFO     | maximum number of monitored processes: 7
[2025-07-26 11:16:03] 2025-07-26 15:15:10,197 | INFO     | monitor loop #350: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:10,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:12,705 | INFO     | monitor loop #351: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:12,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:15,210 | INFO     | monitor loop #352: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:15,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:17,715 | INFO     | monitor loop #353: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:17,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:20,220 | INFO     | monitor loop #354: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:20,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:22,730 | INFO     | monitor loop #355: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:22,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:25,238 | INFO     | monitor loop #356: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:25,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:25,685 | INFO     | PID=2748723 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 11:16:03] 2025-07-26 15:15:25,686 | INFO     | .. there are 23 such processes running
[2025-07-26 11:16:03] 2025-07-26 15:15:27,743 | INFO     | monitor loop #357: job 0:6745068547 is in state 'finished'
[2025-07-26 11:16:03] 2025-07-26 15:15:27,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,625 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 11:16:03] 2025-07-26 15:15:28,634 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1338437500044
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745068547/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | INFO     | extracted standard info from prmon json
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 11:16:03] 2025-07-26 15:15:28,662 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 11:16:03] 2025-07-26 15:15:28,663 | INFO     | fitting pss+swap vs Time
[2025-07-26 11:16:03] 2025-07-26 15:15:28,663 | INFO     | sum of square deviations: 125630262.5
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | sum of deviations: -4387248161.0
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | mean x: 1753540501.5
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | mean y: 2248418.972972973
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | -- intersect: 61239224187.01209
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | intersect: 61239224187.01209
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | chi2: 0.13612837000024539
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | -- intersect: 61239224187.01209
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | current memory leak: -34.92 B/s (using 74 data points, chi2=0.14)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | could have reported an average CPU frequency of 3798 MHz (6 samples)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | ..............................
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . Timing measurements:
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . get job = 0 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . initial setup = 6 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . payload setup = 55 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . stage-in = 0 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . payload execution = 4955 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . stage-out = 0 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | . log creation = 0 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,664 | INFO     | ..............................
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | 
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | job summary report
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | --------------------------------------------------
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | PanDA job id: 6745068547
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | task id: 45743349
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | errors: (none)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | pilot state: finished 
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | transexitcode: 0
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | exeerrorcode: 0
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | exeerrordiag: 
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | exitcode: 0
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | exitmsg: OK
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | cpuconsumptiontime: 22324 s
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | nevents: 400
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | neventsw: 0
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | pid: 2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | pgrp: 2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | corecount: 8
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | event service: False
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | sizes: {0: 2397304, 1: 2397503, 12: 2397503, 23: 2397531, 34: 2397849, 45: 2397849, 5015: 2424317, 5016: 2424316, 5017: 2433426, 5042: 2433564}
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | --------------------------------------------------
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | 
[2025-07-26 11:16:03] 2025-07-26 15:15:28,761 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | job 6745068547 has completed (purged errors)
[2025-07-26 11:16:03] 2025-07-26 15:15:28,935 | INFO     | overall cleanup function is called
[2025-07-26 11:16:03] 2025-07-26 15:15:29,944 | INFO     | --- collectZombieJob: --- 10, [2787041]
[2025-07-26 11:16:03] 2025-07-26 15:15:29,944 | INFO     | zombie collector waiting for pid 2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:29,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 11:16:03] 2025-07-26 15:15:29,944 | INFO     | collected zombie processes
[2025-07-26 11:16:03] 2025-07-26 15:15:29,944 | INFO     | will attempt to kill all subprocesses of pid=2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:30,820 | INFO     | process IDs to be killed: [2787041] (in reverse order)
[2025-07-26 11:16:03] 2025-07-26 15:15:31,146 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 11:16:03] 2025-07-26 15:15:31,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 11:16:03] 2025-07-26 15:15:31,173 | INFO     | did not find any defunct processes belonging to 2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:31,201 | INFO     | did not find any defunct processes belonging to 2787041
[2025-07-26 11:16:03] 2025-07-26 15:15:31,201 | INFO     | ready for new job
[2025-07-26 11:16:03] 2025-07-26 15:15:31,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 11:16:03] 2025-07-26 15:15:31,203 | INFO     | ***************************************
[2025-07-26 11:16:03] 2025-07-26 15:15:31,205 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 11:16:03] 2025-07-26 15:15:31,205 | INFO     | ***************************************
[2025-07-26 11:16:03] 2025-07-26 15:15:31,205 | INFO     | 
[2025-07-26 11:16:03] 2025-07-26 15:15:31,223 | INFO     | architecture information:
[2025-07-26 11:16:03] 2025-07-26 15:15:31,229 | INFO     | executing command: cat /etc/os-release
[2025-07-26 11:16:03] 2025-07-26 15:15:31,321 | INFO     | cat /etc/os-release:
[2025-07-26 11:16:03] NAME="CentOS Linux"
[2025-07-26 11:16:03] VERSION="7 (Core)"
[2025-07-26 11:16:03] ID="centos"
[2025-07-26 11:16:03] ID_LIKE="rhel fedora"
[2025-07-26 11:16:03] VERSION_ID="7"
[2025-07-26 11:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 11:16:03] ANSI_COLOR="0;31"
[2025-07-26 11:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 11:16:03] HOME_URL="https://www.centos.org/"
[2025-07-26 11:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 11:16:03] 
[2025-07-26 11:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 11:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 11:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 11:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 11:16:03] 
[2025-07-26 11:16:03] 2025-07-26 15:15:31,321 | INFO     | ***************************************
[2025-07-26 11:16:03] 2025-07-26 15:15:31,825 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | INFO     | sufficient remaining disk space (171901452288 B)
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | INFO     | update_server=False
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 11:16:03] 2025-07-26 15:15:31,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 11:16:03] 2025-07-26 15:15:31,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:16:03] 2025-07-26 15:15:31,884 | INFO     | aborting loop
[2025-07-26 11:16:03] 2025-07-26 15:15:32,042 | INFO     | all job control threads have been joined
[2025-07-26 11:16:03] 2025-07-26 15:15:32,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 11:16:03] 2025-07-26 15:15:32,685 | INFO     | all data control threads have been joined
[2025-07-26 11:16:03] 2025-07-26 15:15:32,885 | INFO     | [job] retrieve thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:32,890 | INFO     | [job] job monitor thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:32,919 | INFO     | all payload control threads have been joined
[2025-07-26 11:16:03] 2025-07-26 15:15:33,032 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,048 | INFO     | [job] control thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,208 | INFO     | [payload] failed_post thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,282 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,314 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,430 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,445 | INFO     | [data] copytool_in thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,690 | INFO     | [data] control thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 11:16:03] 2025-07-26 15:15:33,887 | INFO     | [data] copytool_out thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:33,925 | INFO     | [payload] control thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:34,310 | INFO     | [job] validate thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:34,337 | INFO     | [payload] validate_post thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:34,771 | INFO     | [job] queue monitor thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:36,410 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 11:16:03] 2025-07-26 15:15:37,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372709476160)>', '<ExcThread(monitor, started 140372437079808)>']
[2025-07-26 11:16:03] 2025-07-26 15:15:42,760 | INFO     | all workflow threads have been joined
[2025-07-26 11:16:03] 2025-07-26 15:15:42,760 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 11:16:03] 2025-07-26 15:15:42,760 | INFO     | traces error code: 0
[2025-07-26 11:16:03] 2025-07-26 15:15:42,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 11:16:03] 2025-07-26 15:16:02,430 | INFO     | PID=2748723 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 11:16:03] 2025-07-26 15:16:02,430 | INFO     | .. there are 22 such processes running
[2025-07-26 11:16:03] 2025-07-26 15:16:02,431 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 11:16:03] 2025-07-26 15:16:02,431 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 11:16:03] 2025-07-26 15:16:02,431 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 11:16:03] 2025-07-26 15:16:02,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 11:16:03] 2025-07-26 15:16:02,431 | INFO     | [monitor] control thread has ended
[2025-07-26 11:16:03] 2025-07-26 15:16:02,586 [wrapper] ==== pilot stdout END ====
[2025-07-26 11:16:03] 2025-07-26 15:16:02,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 11:16:03] 2025-07-26 15:16:02,650 [wrapper] pilotpid: 2748723
[2025-07-26 11:16:03] 2025-07-26 15:16:02,689 [wrapper] Pilot exit status: 0
[2025-07-26 11:16:03] 2025-07-26 15:16:02,817 [wrapper] pandaids: 6745068547
[2025-07-26 11:16:03] 2025-07-26 15:16:03,101 [wrapper] cleanup supervisor_pilot  173999 2748724
[2025-07-26 11:16:03] 2025-07-26 15:16:03,133 [wrapper] Test setup, not cleaning
[2025-07-26 11:16:03] 2025-07-26 15:16:03,170 [wrapper] apfmon messages muted
[2025-07-26 11:16:03] 2025-07-26 15:16:03,214 [wrapper] ==== wrapper stdout END ====
[2025-07-26 11:16:03] 2025-07-26 15:16:03,219 [wrapper] ==== wrapper stderr END ====
[2025-07-26 11:16:03]  *** Error codes and diagnostics ***
[2025-07-26 11:16:03]     "exeErrorCode": 0,
[2025-07-26 11:16:03]     "exeErrorDiag": "",
[2025-07-26 11:16:03]     "pilotErrorCode": 0,
[2025-07-26 11:16:03]     "pilotErrorDiag": "",
[2025-07-26 11:16:03]  *** Listing of results directory ***
[2025-07-26 11:16:03] total 419896
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 20:19 pilot3.tar.gz
[2025-07-26 11:16:03] -rwx------. 1 boincer umatlas     36292 Jul 25 20:50 runpilot2-wrapper.sh
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 20:50 queuedata.json
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas       100 Jul 26 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 11:16:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 09:49 run_atlas
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas       105 Jul 26 09:49 job.xml
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas 228273943 Jul 26 09:49 EVNT.45743347._001665.pool.root.1
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 09:49 start_atlas.sh
[2025-07-26 11:16:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 09:49 shared
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 09:49 input.tar.gz
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas         0 Jul 26 09:49 boinc_lockfile
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 09:49 pandaJob.out
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas    980133 Jul 26 09:50 agis_schedconf.cvmfs.json
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas   1593052 Jul 26 09:50 agis_ddmendpoints.agis.ALL.json
[2025-07-26 11:16:03] drwx------. 4 boincer umatlas      4096 Jul 26 09:50 pilot3
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas      7161 Jul 26 11:10 init_data.xml
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas 196278438 Jul 26 11:14 HITS.45743349._029758.pool.root.1
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas       530 Jul 26 11:14 boinc_task_state.xml
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas      1035 Jul 26 11:14 memory_monitor_summary.json
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas    305904 Jul 26 11:15 log.45743349._029758.job.log.tgz.1
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas      7780 Jul 26 11:15 heartbeat.json
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas        27 Jul 26 11:15 wrapper_checkpoint.txt
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas       823 Jul 26 11:16 pilotlog.txt
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas        95 Jul 26 11:16 pilot_heartbeat.json
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 11:16 boinc_mmap_file
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas    467588 Jul 26 11:16 log.45743349._029758.job.log.1
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas       357 Jul 26 11:16 output.list
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas       620 Jul 26 11:16 runtime_log
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas    788480 Jul 26 11:16 result.tar.gz
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas       651 Jul 26 11:16 YPKODmkIiz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBqzKDmIC1oLo.diag
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 11:16 runtime_log.err
[2025-07-26 11:16:03] -rw-r--r--. 1 boincer umatlas     22502 Jul 26 11:16 stderr.txt
[2025-07-26 11:16:03] HITS file was successfully produced:
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas 196278438 Jul 26 11:14 shared/HITS.pool.root.1
[2025-07-26 11:16:03]  *** Contents of shared directory: ***
[2025-07-26 11:16:03] total 415932
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas 228273943 Jul 26 09:49 ATLAS.root_0
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 09:49 start_atlas.sh
[2025-07-26 11:16:03] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 09:49 input.tar.gz
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas 196278438 Jul 26 11:14 HITS.pool.root.1
[2025-07-26 11:16:03] -rw-------. 1 boincer umatlas    788480 Jul 26 11:16 result.tar.gz
11:16:04 (2732633): run_atlas exited; CPU time 22434.339859
11:16:04 (2732633): called boinc_finish(0)

</stderr_txt>
]]>

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