Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:05:37 (3293938): wrapper (7.7.26015): starting
08:05:37 (3293938): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 08:05:37] Arguments: --nthreads 4
[2025-07-28 08:05:37] Threads: 4
[2025-07-28 08:05:37] Checking for CVMFS
[2025-07-28 08:05:37] No cvmfs_config command found, will try listing directly
[2025-07-28 08:05:37] CVMFS is ok
[2025-07-28 08:05:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 08:05:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 08:05:37] Further information can be found at the LHC@home message board.
[2025-07-28 08:05:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 08:05:37] Checking for apptainer binary...
[2025-07-28 08:05:37] which: no apptainer in ((null))
[2025-07-28 08:05:37] apptainer is not installed, using version from CVMFS
[2025-07-28 08:05:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 08:05:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-28 08:05:38] apptainer works
[2025-07-28 08:05:38] Set ATHENA_PROC_NUMBER=4
[2025-07-28 08:05:38] Set ATHENA_CORE_NUMBER=4
[2025-07-28 08:05:38] Starting ATLAS job with PandaID=6745095252
[2025-07-28 08:05:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:36:53 (3734846): wrapper (7.7.26015): starting
09:36:53 (3734846): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 09:36:53] Arguments: --nthreads 4
[2025-07-28 09:36:53] Threads: 4
[2025-07-28 09:36:53] This job has been restarted, cleaning up previous attempt
[2025-07-28 09:36:53] Checking for CVMFS
[2025-07-28 09:36:53] No cvmfs_config command found, will try listing directly
[2025-07-28 09:36:53] CVMFS is ok
[2025-07-28 09:36:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 09:36:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 09:36:53] Further information can be found at the LHC@home message board.
[2025-07-28 09:36:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:36:53] Checking for apptainer binary...
[2025-07-28 09:36:53] which: no apptainer in ((null))
[2025-07-28 09:36:53] apptainer is not installed, using version from CVMFS
[2025-07-28 09:36:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:36:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-28 09:36:53] apptainer works
[2025-07-28 09:36:53] Set ATHENA_PROC_NUMBER=4
[2025-07-28 09:36:53] Set ATHENA_CORE_NUMBER=4
[2025-07-28 09:36:53] Starting ATLAS job with PandaID=6745095252
[2025-07-28 09:36:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:32:03]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:32:03] 2025-07-28 10:31:28,793 | INFO     | chi2: 1.3480710731855607
[2025-07-28 12:32:03] 2025-07-28 10:31:28,793 | INFO     | sum of square deviations: 1418361477.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,794 | INFO     | sum of deviations: 9759287184.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,794 | INFO     | mean x: 1753693292.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,794 | INFO     | mean y: 2341293.7771084337
[2025-07-28 12:32:03] 2025-07-28 10:31:28,794 | INFO     | -- intersect: -12064255794.861643
[2025-07-28 12:32:03] 2025-07-28 10:31:28,794 | INFO     | intersect: -12064255794.861643
[2025-07-28 12:32:03] 2025-07-28 10:31:28,795 | INFO     | chi2: 1.3489045304296865
[2025-07-28 12:32:03] 2025-07-28 10:31:28,795 | INFO     | current chi2=1.3489045304296865 (change=-0.06182591264689443 %)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,795 | INFO     | right removable region: 165
[2025-07-28 12:32:03] 2025-07-28 10:31:28,795 | INFO     | sum of square deviations: 1418361477.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,796 | INFO     | sum of deviations: -8667852462.000002
[2025-07-28 12:32:03] 2025-07-28 10:31:28,796 | INFO     | mean x: 1753693597.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,796 | INFO     | mean y: 2363243.3373493976
[2025-07-28 12:32:03] 2025-07-28 10:31:28,796 | INFO     | -- intersect: 10719488325.919842
[2025-07-28 12:32:03] 2025-07-28 10:31:28,796 | INFO     | intersect: 10719488325.919842
[2025-07-28 12:32:03] 2025-07-28 10:31:28,797 | INFO     | chi2: 0.05700175810039184
[2025-07-28 12:32:03] 2025-07-28 10:31:28,797 | INFO     | current chi2=0.05700175810039184 (change=95.77160587195942 %)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,797 | INFO     | sum of square deviations: 1294014960.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,798 | INFO     | sum of deviations: -2663358759.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,798 | INFO     | mean x: 1753693750.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,798 | INFO     | mean y: 2355879.8757763975
[2025-07-28 12:32:03] 2025-07-28 10:31:28,798 | INFO     | -- intersect: 3611831623.2366233
[2025-07-28 12:32:03] 2025-07-28 10:31:28,798 | INFO     | intersect: 3611831623.2366233
[2025-07-28 12:32:03] 2025-07-28 10:31:28,799 | INFO     | chi2: 0.00913420108493982
[2025-07-28 12:32:03] 2025-07-28 10:31:28,799 | INFO     | current chi2=0.00913420108493982 (change=83.97558007096447 %)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,799 | INFO     | sum of square deviations: 1177156955.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,800 | INFO     | sum of deviations: -1202975723.4999995
[2025-07-28 12:32:03] 2025-07-28 10:31:28,800 | INFO     | mean x: 1753693902.5
[2025-07-28 12:32:03] 2025-07-28 10:31:28,800 | INFO     | mean y: 2353984.903846154
[2025-07-28 12:32:03] 2025-07-28 10:31:28,800 | INFO     | -- intersect: 1794511931.3838677
[2025-07-28 12:32:03] 2025-07-28 10:31:28,800 | INFO     | intersect: 1794511931.3838677
[2025-07-28 12:32:03] 2025-07-28 10:31:28,801 | INFO     | chi2: 0.006182924411602281
[2025-07-28 12:32:03] 2025-07-28 10:31:28,801 | INFO     | current chi2=0.006182924411602281 (change=32.31017848078154 %)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,801 | INFO     | sum of square deviations: 1067554900.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,802 | INFO     | sum of deviations: -352490085.99999964
[2025-07-28 12:32:03] 2025-07-28 10:31:28,802 | INFO     | mean x: 1753694055.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,802 | INFO     | mean y: 2352798.4105960266
[2025-07-28 12:32:03] 2025-07-28 10:31:28,802 | INFO     | -- intersect: 581395401.5260311
[2025-07-28 12:32:03] 2025-07-28 10:31:28,802 | INFO     | intersect: 581395401.5260311
[2025-07-28 12:32:03] 2025-07-28 10:31:28,803 | INFO     | chi2: 0.005177812460203612
[2025-07-28 12:32:03] 2025-07-28 10:31:28,803 | INFO     | current chi2=0.005177812460203612 (change=16.256254880175682 %)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,803 | INFO     | left removable region: 40
[2025-07-28 12:32:03] 2025-07-28 10:31:28,803 | INFO     | sum of square deviations: 605592750.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | sum of deviations: 1730589825.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | mean x: 1753694482.0
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | mean y: 2348596.32
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | -- intersect: -5009147704.961424
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | intersect: -5009147704.961424
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | chi2: 0.0002498070002764731
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | -- intersect: -5009147704.961424
[2025-07-28 12:32:03] 2025-07-28 10:31:28,804 | INFO     | current memory leak: 2.86 B/s (using 125 data points, chi2=0.00)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | could have reported an average CPU frequency of 2702 MHz (9 samples)
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | ..............................
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | . Timing measurements:
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | . get job = 0 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | . initial setup = 1 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | . payload setup = 9 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,805 | INFO     | . stage-in = 0 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,806 | INFO     | . payload execution = 10419 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,806 | INFO     | . stage-out = 1 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,806 | INFO     | . log creation = 0 s
[2025-07-28 12:32:03] 2025-07-28 10:31:28,806 | INFO     | ..............................
[2025-07-28 12:32:03] 2025-07-28 10:31:29,286 | INFO     | 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,286 | INFO     | job summary report
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | --------------------------------------------------
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | PanDA job id: 6745095252
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | task id: 45743349
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | errors: (none)
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | pilot state: finished 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | transexitcode: 0
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | exeerrorcode: 0
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | exeerrordiag: 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,287 | INFO     | exitcode: 0
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | exitmsg: OK
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | cpuconsumptiontime: 39817 s
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | nevents: 400
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | neventsw: 0
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | pid: 3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | pgrp: 3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | corecount: 4
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | event service: False
[2025-07-28 12:32:03] 2025-07-28 10:31:29,288 | INFO     | sizes: {0: 2397313, 1: 2397512, 7: 2397774, 12: 2397802, 10433: 2427021, 10435: 2436041, 10436: 2436225, 10445: 2436483}
[2025-07-28 12:32:03] 2025-07-28 10:31:29,289 | INFO     | --------------------------------------------------
[2025-07-28 12:32:03] 2025-07-28 10:31:29,289 | INFO     | 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,289 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-07-28 12:32:03] 2025-07-28 10:31:29,317 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,322 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:32:03] 2025-07-28 10:31:29,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:32:03] 2025-07-28 10:31:29,322 | INFO     | job 6745095252 has completed (purged errors)
[2025-07-28 12:32:03] 2025-07-28 10:31:29,322 | INFO     | overall cleanup function is called
[2025-07-28 12:32:03] 2025-07-28 10:31:29,914 | INFO     | PID=3738801 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 12:32:03] 2025-07-28 10:31:29,915 | INFO     | .. there are 26 such processes running
[2025-07-28 12:32:03] 2025-07-28 10:31:30,333 | INFO     | --- collectZombieJob: --- 10, [3746170]
[2025-07-28 12:32:03] 2025-07-28 10:31:30,333 | INFO     | zombie collector waiting for pid 3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:30,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:32:03] 2025-07-28 10:31:30,334 | INFO     | collected zombie processes
[2025-07-28 12:32:03] 2025-07-28 10:31:30,334 | INFO     | will attempt to kill all subprocesses of pid=3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:31,036 | INFO     | process IDs to be killed: [3746170] (in reverse order)
[2025-07-28 12:32:03] 2025-07-28 10:31:31,303 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:32:03] 2025-07-28 10:31:31,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:32:03] 2025-07-28 10:31:31,325 | INFO     | did not find any defunct processes belonging to 3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:31,343 | INFO     | did not find any defunct processes belonging to 3746170
[2025-07-28 12:32:03] 2025-07-28 10:31:31,344 | INFO     | ready for new job
[2025-07-28 12:32:03] 2025-07-28 10:31:31,344 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:32:03] 2025-07-28 10:31:31,346 | INFO     | ***************************************
[2025-07-28 12:32:03] 2025-07-28 10:31:31,346 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:32:03] 2025-07-28 10:31:31,346 | INFO     | ***************************************
[2025-07-28 12:32:03] 2025-07-28 10:31:31,346 | INFO     | 
[2025-07-28 12:32:03] 2025-07-28 10:31:31,354 | INFO     | architecture information:
[2025-07-28 12:32:03] 2025-07-28 10:31:31,354 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:32:03] 2025-07-28 10:31:31,375 | INFO     | cat /etc/os-release:
[2025-07-28 12:32:03] NAME="CentOS Linux"
[2025-07-28 12:32:03] VERSION="7 (Core)"
[2025-07-28 12:32:03] ID="centos"
[2025-07-28 12:32:03] ID_LIKE="rhel fedora"
[2025-07-28 12:32:03] VERSION_ID="7"
[2025-07-28 12:32:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:32:03] ANSI_COLOR="0;31"
[2025-07-28 12:32:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:32:03] HOME_URL="https://www.centos.org/"
[2025-07-28 12:32:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:32:03] 
[2025-07-28 12:32:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:32:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:32:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:32:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:32:03] 
[2025-07-28 12:32:03] 2025-07-28 10:31:31,375 | INFO     | ***************************************
[2025-07-28 12:32:03] 2025-07-28 10:31:31,877 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-07-28 12:32:03] 2025-07-28 10:31:31,898 | INFO     | sufficient remaining disk space (3284576239616 B)
[2025-07-28 12:32:03] 2025-07-28 10:31:31,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:32:03] 2025-07-28 10:31:31,899 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:32:03] 2025-07-28 10:31:31,899 | INFO     | update_server=False
[2025-07-28 12:32:03] 2025-07-28 10:31:31,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:32:03] 2025-07-28 10:31:31,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:32:03] 2025-07-28 10:31:32,026 | INFO     | all payload control threads have been joined
[2025-07-28 12:32:03] 2025-07-28 10:31:32,030 | INFO     | all job control threads have been joined
[2025-07-28 12:32:03] 2025-07-28 10:31:32,324 | INFO     | all data control threads have been joined
[2025-07-28 12:32:03] 2025-07-28 10:31:32,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:32:03] 2025-07-28 10:31:32,327 | INFO     | aborting loop
[2025-07-28 12:32:03] 2025-07-28 10:31:32,904 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,031 | INFO     | [payload] control thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,035 | INFO     | [job] control thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,325 | INFO     | [job] validate thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,329 | INFO     | [data] control thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,331 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,613 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,712 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,839 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,905 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:33,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:32:03] 2025-07-28 10:31:33,945 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:34,093 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:34,249 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:34,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:32:03] 2025-07-28 10:31:34,913 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:38,359 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:41,959 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:32:03] 2025-07-28 10:31:42,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:32:03] 2025-07-28 10:31:44,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23098395273024)>', '<ExcThread(monitor, started 23098162120448)>']
[2025-07-28 12:32:03] 2025-07-28 10:31:49,812 | INFO     | all workflow threads have been joined
[2025-07-28 12:32:03] 2025-07-28 10:31:49,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:32:03] 2025-07-28 10:31:49,813 | INFO     | traces error code: 0
[2025-07-28 12:32:03] 2025-07-28 10:31:49,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:32:03] 2025-07-28 10:32:02,715 | INFO     | PID=3738801 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:32:03] 2025-07-28 10:32:02,715 | INFO     | .. there are 26 such processes running
[2025-07-28 12:32:03] 2025-07-28 10:32:02,716 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:32:03] 2025-07-28 10:32:02,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:32:03] 2025-07-28 10:32:02,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:32:03] 2025-07-28 10:32:02,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:32:03] 2025-07-28 10:32:02,717 | INFO     | [monitor] control thread has ended
[2025-07-28 12:32:03] 2025-07-28 10:32:02,867 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:32:03] 2025-07-28 10:32:02,871 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:32:03] 2025-07-28 10:32:02,875 [wrapper] pilotpid: 3738801
[2025-07-28 12:32:03] 2025-07-28 10:32:02,879 [wrapper] Pilot exit status: 0
[2025-07-28 12:32:03] 2025-07-28 10:32:02,896 [wrapper] pandaids: 6745095252 6745095252
[2025-07-28 12:32:03] 2025-07-28 10:32:03,044 [wrapper] cleanup supervisor_pilot  606136 3738802
[2025-07-28 12:32:03] 2025-07-28 10:32:03,048 [wrapper] Test setup, not cleaning
[2025-07-28 12:32:03] 2025-07-28 10:32:03,052 [wrapper] apfmon messages muted
[2025-07-28 12:32:03] 2025-07-28 10:32:03,055 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:32:03] 2025-07-28 10:32:03,059 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:32:03]  *** Error codes and diagnostics ***
[2025-07-28 12:32:03]     "exeErrorCode": 0,
[2025-07-28 12:32:03]     "exeErrorDiag": "",
[2025-07-28 12:32:03]     "pilotErrorCode": 0,
[2025-07-28 12:32:03]     "pilotErrorDiag": "",
[2025-07-28 12:32:03]  *** Listing of results directory ***
[2025-07-28 12:32:03] total 486844
[2025-07-28 12:32:03] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc    530466 Jul 26 05:10 pilot3.tar.gz
[2025-07-28 12:32:03] -rwx------ 1 boinc boinc     36292 Jul 26 05:36 runpilot2-wrapper.sh
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc      5112 Jul 26 05:36 queuedata.json
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc       100 Jul 28 08:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:32:03] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 08:05 run_atlas
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc       105 Jul 28 08:05 job.xml
[2025-07-28 12:32:03] -rw-r--r-- 3 boinc boinc 142286488 Jul 28 08:05 EVNT.45743347._001773.pool.root.1
[2025-07-28 12:32:03] -rw-r--r-- 3 boinc boinc 142286488 Jul 28 08:05 ATLAS.root_0
[2025-07-28 12:32:03] -rw-r--r-- 2 boinc boinc     15095 Jul 28 08:05 start_atlas.sh
[2025-07-28 12:32:03] drwxrwx--x 2 boinc boinc      4096 Jul 28 08:05 shared
[2025-07-28 12:32:03] -rw-r--r-- 2 boinc boinc    542888 Jul 28 08:05 input.tar.gz
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc         0 Jul 28 08:05 boinc_lockfile
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc      6692 Jul 28 09:36 init_data.xml
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc      2562 Jul 28 09:36 pandaJob.out
[2025-07-28 12:32:03] -rw------- 1 boinc boinc    978452 Jul 28 09:37 agis_schedconf.cvmfs.json
[2025-07-28 12:32:03] -rw------- 1 boinc boinc 207537141 Jul 28 12:30 HITS.45743349._031638.pool.root.1
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc       530 Jul 28 12:30 boinc_task_state.xml
[2025-07-28 12:32:03] -rw------- 1 boinc boinc      1031 Jul 28 12:31 memory_monitor_summary.json
[2025-07-28 12:32:03] -rw------- 1 boinc boinc   1593052 Jul 28 12:31 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:32:03] -rw------- 1 boinc boinc    287709 Jul 28 12:31 log.45743349._031638.job.log.tgz.1
[2025-07-28 12:32:03] -rw------- 1 boinc boinc      7786 Jul 28 12:31 heartbeat.json
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc      8192 Jul 28 12:31 boinc_mmap_file
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc        28 Jul 28 12:31 wrapper_checkpoint.txt
[2025-07-28 12:32:03] -rw------- 1 boinc boinc        97 Jul 28 12:32 pilot_heartbeat.json
[2025-07-28 12:32:03] -rw------- 1 boinc boinc       823 Jul 28 12:32 pilotlog.txt
[2025-07-28 12:32:03] -rw------- 1 boinc boinc    979648 Jul 28 12:32 log.45743349._031638.job.log.1
[2025-07-28 12:32:03] -rw------- 1 boinc boinc       357 Jul 28 12:32 output.list
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc       620 Jul 28 12:32 runtime_log
[2025-07-28 12:32:03] -rw------- 1 boinc boinc   1290240 Jul 28 12:32 result.tar.gz
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc      9104 Jul 28 12:32 runtime_log.err
[2025-07-28 12:32:03] -rw------- 1 boinc boinc       789 Jul 28 12:32 gVxNDmvskz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma9QLDmiqc4Tm.diag
[2025-07-28 12:32:03] -rw-r--r-- 1 boinc boinc     22742 Jul 28 12:32 stderr.txt
[2025-07-28 12:32:03] HITS file was successfully produced:
[2025-07-28 12:32:03] -rw------- 1 boinc boinc 207537141 Jul 28 12:30 shared/HITS.pool.root.1
[2025-07-28 12:32:03]  *** Contents of shared directory: ***
[2025-07-28 12:32:03] total 343444
[2025-07-28 12:32:03] -rw-r--r-- 3 boinc boinc 142286488 Jul 28 08:05 ATLAS.root_0
[2025-07-28 12:32:03] -rw-r--r-- 2 boinc boinc     15095 Jul 28 08:05 start_atlas.sh
[2025-07-28 12:32:03] -rw-r--r-- 2 boinc boinc    542888 Jul 28 08:05 input.tar.gz
[2025-07-28 12:32:03] -rw------- 1 boinc boinc 207537141 Jul 28 12:30 HITS.pool.root.1
[2025-07-28 12:32:03] -rw------- 1 boinc boinc   1290240 Jul 28 12:32 result.tar.gz
12:32:04 (3734846): run_atlas exited; CPU time 40407.104769
12:32:04 (3734846): called boinc_finish(0)

</stderr_txt>
]]>

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