Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:12:53 (3135881): wrapper (7.7.26015): starting
05:12:53 (3135881): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 05:12:53] Arguments: --nthreads 8
[2025-07-26 05:12:53] Threads: 8
[2025-07-26 05:12:53] Checking for CVMFS
[2025-07-26 05:12:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 05:12:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 05:12:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 05:12:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 05:12:55] 2.13.0.0 97685 25599 433552 148770 0 84 22934291 32935936 17241 16776704 0 60552184 99.613 97145430 29813 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 05:12:55] CVMFS is ok
[2025-07-26 05:12:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 05:12:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 05:12:55] Further information can be found at the LHC@home message board.
[2025-07-26 05:12:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 05:12:55] Checking for apptainer binary...
[2025-07-26 05:12:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 05:12:55] Running /usr/bin/apptainer --version
[2025-07-26 05:12:56] apptainer version 1.4.1-1.el9
[2025-07-26 05:12:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 05:12:56] c6-4-5-1.aglt2.org
[2025-07-26 05:12:56] apptainer works
[2025-07-26 05:12:57] Set ATHENA_PROC_NUMBER=8
[2025-07-26 05:12:57] Set ATHENA_CORE_NUMBER=8
[2025-07-26 05:12:57] Starting ATLAS job with PandaID=6745094737
[2025-07-26 05:12:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 08:35:51]  *** The last 200 lines of the pilot log: ***
[2025-07-26 08:35:51] 2025-07-26 12:35:07,773 | INFO     | PID=3141917 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 08:35:51] 2025-07-26 12:35:07,773 | INFO     | .. there are 34 such processes running
[2025-07-26 08:35:51] 2025-07-26 12:35:08,908 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 08:35:51] 2025-07-26 12:35:08,914 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2751.5264843749997
[2025-07-26 08:35:51] 2025-07-26 12:35:09,007 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745094737/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,008 | INFO     | extracted standard info from prmon json
[2025-07-26 08:35:51] 2025-07-26 12:35:09,009 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 08:35:51] 2025-07-26 12:35:09,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 08:35:51] 2025-07-26 12:35:09,036 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 08:35:51] 2025-07-26 12:35:09,036 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 08:35:51] 2025-07-26 12:35:09,069 | INFO     | fitting pss+swap vs Time
[2025-07-26 08:35:51] 2025-07-26 12:35:09,070 | INFO     | sum of square deviations: 2334876497.4897914
[2025-07-26 08:35:51] 2025-07-26 12:35:09,100 | INFO     | sum of deviations: -26703315429.72449
[2025-07-26 08:35:51] 2025-07-26 12:35:09,106 | INFO     | mean x: 1753527264.0510204
[2025-07-26 08:35:51] 2025-07-26 12:35:09,106 | INFO     | mean y: 2216778.8724489794
[2025-07-26 08:35:51] 2025-07-26 12:35:09,112 | INFO     | -- intersect: 20056807116.69862
[2025-07-26 08:35:51] 2025-07-26 12:35:09,112 | INFO     | intersect: 20056807116.69862
[2025-07-26 08:35:51] 2025-07-26 12:35:09,113 | INFO     | chi2: 2.1016014257019706
[2025-07-26 08:35:51] 2025-07-26 12:35:09,113 | INFO     | sum of square deviations: 2160748030.931929
[2025-07-26 08:35:51] 2025-07-26 12:35:09,115 | INFO     | sum of deviations: -21883697147.79059
[2025-07-26 08:35:51] 2025-07-26 12:35:09,115 | INFO     | mean x: 1753527111.565445
[2025-07-26 08:35:51] 2025-07-26 12:35:09,115 | INFO     | mean y: 2221009.1832460733
[2025-07-26 08:35:51] 2025-07-26 12:35:09,115 | INFO     | -- intersect: 17761652326.766197
[2025-07-26 08:35:51] 2025-07-26 12:35:09,115 | INFO     | intersect: 17761652326.766197
[2025-07-26 08:35:51] 2025-07-26 12:35:09,143 | INFO     | chi2: 2.0897436310579387
[2025-07-26 08:35:51] 2025-07-26 12:35:09,143 | INFO     | current chi2=2.0897436310579387 (change=0.5642266178074756 %)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,143 | INFO     | right removable region: 190
[2025-07-26 08:35:51] 2025-07-26 12:35:09,144 | INFO     | sum of square deviations: 2160682150.931929
[2025-07-26 08:35:51] 2025-07-26 12:35:09,145 | INFO     | sum of deviations: -55703286130.188484
[2025-07-26 08:35:51] 2025-07-26 12:35:09,145 | INFO     | mean x: 1753527416.565445
[2025-07-26 08:35:51] 2025-07-26 12:35:09,146 | INFO     | mean y: 2241944.335078534
[2025-07-26 08:35:51] 2025-07-26 12:35:09,146 | INFO     | -- intersect: 45208909375.70428
[2025-07-26 08:35:51] 2025-07-26 12:35:09,146 | INFO     | intersect: 45208909375.70428
[2025-07-26 08:35:51] 2025-07-26 12:35:09,171 | INFO     | chi2: 0.4992620019963787
[2025-07-26 08:35:51] 2025-07-26 12:35:09,171 | INFO     | current chi2=0.4992620019963787 (change=76.2437350921754 %)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,171 | INFO     | sum of square deviations: 1995394872.0913994
[2025-07-26 08:35:51] 2025-07-26 12:35:09,172 | INFO     | sum of deviations: -52589031994.73657
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | mean x: 1753527569.0698924
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | mean y: 2239016.6720430106
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | -- intersect: 46216809738.113304
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | intersect: 46216809738.113304
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | chi2: 0.47613138697171153
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | current chi2=0.47613138697171153 (change=4.632961237221283 %)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,173 | INFO     | left removable region: 20
[2025-07-26 08:35:51] 2025-07-26 12:35:09,174 | INFO     | sum of square deviations: 1523560112.0058877
[2025-07-26 08:35:51] 2025-07-26 12:35:09,181 | INFO     | sum of deviations: -31082687736.135273
[2025-07-26 08:35:51] 2025-07-26 12:35:09,181 | INFO     | mean x: 1753527691.0764706
[2025-07-26 08:35:51] 2025-07-26 12:35:09,181 | INFO     | mean y: 2227317.2411764706
[2025-07-26 08:35:51] 2025-07-26 12:35:09,181 | INFO     | -- intersect: 35776564823.77835
[2025-07-26 08:35:51] 2025-07-26 12:35:09,182 | INFO     | intersect: 35776564823.77835
[2025-07-26 08:35:51] 2025-07-26 12:35:09,182 | INFO     | chi2: 0.40932657077499907
[2025-07-26 08:35:51] 2025-07-26 12:35:09,182 | INFO     | -- intersect: 35776564823.77835
[2025-07-26 08:35:51] 2025-07-26 12:35:09,182 | INFO     | current memory leak: -20.40 B/s (using 170 data points, chi2=0.41)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,199 | INFO     | could have reported an average CPU frequency of 2774 MHz (10 samples)
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | ..............................
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | . Timing measurements:
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | . get job = 0 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | . initial setup = 7 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | . payload setup = 27 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,200 | INFO     | . stage-in = 0 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,201 | INFO     | . payload execution = 11961 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,201 | INFO     | . stage-out = 10 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,201 | INFO     | . log creation = 0 s
[2025-07-26 08:35:51] 2025-07-26 12:35:09,201 | INFO     | ..............................
[2025-07-26 08:35:51] 2025-07-26 12:35:10,111 | INFO     | 
[2025-07-26 08:35:51] 2025-07-26 12:35:10,112 | INFO     | job summary report
[2025-07-26 08:35:51] 2025-07-26 12:35:10,113 | INFO     | --------------------------------------------------
[2025-07-26 08:35:51] 2025-07-26 12:35:10,113 | INFO     | PanDA job id: 6745094737
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | task id: 45743349
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | errors: (none)
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | pilot state: finished 
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | transexitcode: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | exeerrorcode: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | exeerrordiag: 
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | exitcode: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | exitmsg: OK
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | cpuconsumptiontime: 45631 s
[2025-07-26 08:35:51] 2025-07-26 12:35:10,114 | INFO     | nevents: 400
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | neventsw: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | pid: 3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | pgrp: 3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | corecount: 8
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | event service: False
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | sizes: {0: 2397304, 1: 2397503, 13: 2397503, 23: 2397559, 28: 2397849, 34: 2397877, 11994: 2427441, 11995: 2427440, 12007: 2436494, 12008: 2436550, 12038: 2436744}
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | --------------------------------------------------
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | 
[2025-07-26 08:35:51] 2025-07-26 12:35:10,115 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 08:35:51] 2025-07-26 12:35:10,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,339 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,339 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,340 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 08:35:51] 2025-07-26 12:35:10,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 08:35:51] 2025-07-26 12:35:10,341 | INFO     | job 6745094737 has completed (purged errors)
[2025-07-26 08:35:51] 2025-07-26 12:35:10,341 | INFO     | overall cleanup function is called
[2025-07-26 08:35:51] 2025-07-26 12:35:11,389 | INFO     | --- collectZombieJob: --- 10, [3160352]
[2025-07-26 08:35:51] 2025-07-26 12:35:11,389 | INFO     | zombie collector waiting for pid 3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:11,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 08:35:51] 2025-07-26 12:35:11,389 | INFO     | collected zombie processes
[2025-07-26 08:35:51] 2025-07-26 12:35:11,389 | INFO     | will attempt to kill all subprocesses of pid=3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:15,628 | INFO     | process IDs to be killed: [3160352] (in reverse order)
[2025-07-26 08:35:51] 2025-07-26 12:35:16,334 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 08:35:51] 2025-07-26 12:35:16,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 08:35:51] 2025-07-26 12:35:16,479 | INFO     | did not find any defunct processes belonging to 3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:16,568 | INFO     | did not find any defunct processes belonging to 3160352
[2025-07-26 08:35:51] 2025-07-26 12:35:16,568 | INFO     | ready for new job
[2025-07-26 08:35:51] 2025-07-26 12:35:16,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 08:35:51] 2025-07-26 12:35:16,587 | INFO     | ***************************************
[2025-07-26 08:35:51] 2025-07-26 12:35:16,587 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 08:35:51] 2025-07-26 12:35:16,587 | INFO     | ***************************************
[2025-07-26 08:35:51] 2025-07-26 12:35:16,587 | INFO     | 
[2025-07-26 08:35:51] 2025-07-26 12:35:16,604 | INFO     | architecture information:
[2025-07-26 08:35:51] 2025-07-26 12:35:16,623 | INFO     | executing command: cat /etc/os-release
[2025-07-26 08:35:51] 2025-07-26 12:35:16,769 | INFO     | cat /etc/os-release:
[2025-07-26 08:35:51] NAME="CentOS Linux"
[2025-07-26 08:35:51] VERSION="7 (Core)"
[2025-07-26 08:35:51] ID="centos"
[2025-07-26 08:35:51] ID_LIKE="rhel fedora"
[2025-07-26 08:35:51] VERSION_ID="7"
[2025-07-26 08:35:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 08:35:51] ANSI_COLOR="0;31"
[2025-07-26 08:35:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 08:35:51] HOME_URL="https://www.centos.org/"
[2025-07-26 08:35:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 08:35:51] 
[2025-07-26 08:35:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 08:35:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 08:35:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 08:35:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 08:35:51] 
[2025-07-26 08:35:51] 2025-07-26 12:35:16,769 | INFO     | ***************************************
[2025-07-26 08:35:51] 2025-07-26 12:35:17,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 08:35:51] 2025-07-26 12:35:17,452 | INFO     | sufficient remaining disk space (76232523776 B)
[2025-07-26 08:35:51] 2025-07-26 12:35:17,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 08:35:51] 2025-07-26 12:35:17,453 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 08:35:51] 2025-07-26 12:35:17,453 | INFO     | update_server=False
[2025-07-26 08:35:51] 2025-07-26 12:35:17,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 08:35:51] 2025-07-26 12:35:17,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 08:35:51] 2025-07-26 12:35:17,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 08:35:51] 2025-07-26 12:35:17,493 | INFO     | all data control threads have been joined
[2025-07-26 08:35:51] 2025-07-26 12:35:17,813 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 08:35:51] 2025-07-26 12:35:17,813 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 08:35:51] 2025-07-26 12:35:17,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 08:35:51] 2025-07-26 12:35:17,813 | INFO     | will abort loop
[2025-07-26 08:35:51] 2025-07-26 12:35:17,820 | INFO     | all payload control threads have been joined
[2025-07-26 08:35:51] 2025-07-26 12:35:18,459 | INFO     | [job] retrieve thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,476 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,481 | INFO     | [job] validate thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,481 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,499 | INFO     | [data] control thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,552 | INFO     | all job control threads have been joined
[2025-07-26 08:35:51] 2025-07-26 12:35:18,819 | INFO     | [job] job monitor thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,826 | INFO     | [payload] control thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,870 | INFO     | [payload] validate_post thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:18,922 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:19,032 | INFO     | [payload] failed_post thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:19,131 | INFO     | [data] copytool_in thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:19,131 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:19,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 08:35:51] 2025-07-26 12:35:19,472 | INFO     | [data] copytool_out thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:19,558 | INFO     | [job] control thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:20,193 | INFO     | [job] queue monitor thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:21,474 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 08:35:51] 2025-07-26 12:35:23,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514006996800)>', '<ExcThread(monitor, started 140513495717632)>']
[2025-07-26 08:35:51] 2025-07-26 12:35:28,254 | INFO     | all workflow threads have been joined
[2025-07-26 08:35:51] 2025-07-26 12:35:28,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 08:35:51] 2025-07-26 12:35:28,254 | INFO     | traces error code: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:28,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 08:35:51] 2025-07-26 12:35:47,765 | INFO     | PID=3141917 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 08:35:51] 2025-07-26 12:35:47,770 | INFO     | .. there are 35 such processes running
[2025-07-26 08:35:51] 2025-07-26 12:35:47,771 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 08:35:51] 2025-07-26 12:35:47,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 08:35:51] 2025-07-26 12:35:47,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 08:35:51] 2025-07-26 12:35:47,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 08:35:51] 2025-07-26 12:35:47,771 | INFO     | [monitor] control thread has ended
[2025-07-26 08:35:51] 2025-07-26 12:35:50,163 [wrapper] ==== pilot stdout END ====
[2025-07-26 08:35:51] 2025-07-26 12:35:50,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 08:35:51] 2025-07-26 12:35:50,250 [wrapper] pilotpid: 3141917
[2025-07-26 08:35:51] 2025-07-26 12:35:50,291 [wrapper] Pilot exit status: 0
[2025-07-26 08:35:51] 2025-07-26 12:35:50,445 [wrapper] pandaids: 6745094737
[2025-07-26 08:35:51] 2025-07-26 12:35:50,559 [wrapper] cleanup supervisor_pilot 3913203 3141918
[2025-07-26 08:35:51] 2025-07-26 12:35:50,578 [wrapper] Test setup, not cleaning
[2025-07-26 08:35:51] 2025-07-26 12:35:50,600 [wrapper] apfmon messages muted
[2025-07-26 08:35:51] 2025-07-26 12:35:50,615 [wrapper] ==== wrapper stdout END ====
[2025-07-26 08:35:51] 2025-07-26 12:35:50,686 [wrapper] ==== wrapper stderr END ====
[2025-07-26 08:35:51]  *** Error codes and diagnostics ***
[2025-07-26 08:35:51]     "exeErrorCode": 0,
[2025-07-26 08:35:51]     "exeErrorDiag": "",
[2025-07-26 08:35:51]     "pilotErrorCode": 0,
[2025-07-26 08:35:51]     "pilotErrorDiag": "",
[2025-07-26 08:35:51]  *** Listing of results directory ***
[2025-07-26 08:35:51] total 348960
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 22:57 pilot3.tar.gz
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 23:06 queuedata.json
[2025-07-26 08:35:51] -rwx------. 1 boincer umatlas     36292 Jul 25 23:07 runpilot2-wrapper.sh
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas       100 Jul 26 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 08:35:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 05:12 run_atlas
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas       105 Jul 26 05:12 job.xml
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas 144491682 Jul 26 05:12 EVNT.45743347._001747.pool.root.1
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 05:12 start_atlas.sh
[2025-07-26 08:35:51] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 05:12 shared
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 05:12 input.tar.gz
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas         0 Jul 26 05:12 boinc_lockfile
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 05:12 pandaJob.out
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas    980133 Jul 26 05:13 agis_schedconf.cvmfs.json
[2025-07-26 08:35:51] drwx------. 4 boincer umatlas      4096 Jul 26 05:13 pilot3
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas      6856 Jul 26 08:31 init_data.xml
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas 206380702 Jul 26 08:33 HITS.45743349._031254.pool.root.1
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas       530 Jul 26 08:33 boinc_task_state.xml
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas      1043 Jul 26 08:34 memory_monitor_summary.json
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas   1593052 Jul 26 08:34 agis_ddmendpoints.agis.ALL.json
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas    367516 Jul 26 08:34 log.45743349._031254.job.log.tgz.1
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas      7830 Jul 26 08:35 heartbeat.json
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas        28 Jul 26 08:35 wrapper_checkpoint.txt
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 08:35 boinc_mmap_file
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas       823 Jul 26 08:35 pilotlog.txt
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas        95 Jul 26 08:35 pilot_heartbeat.json
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas    928885 Jul 26 08:35 log.45743349._031254.job.log.1
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas       357 Jul 26 08:35 output.list
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas       620 Jul 26 08:35 runtime_log
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas   1310720 Jul 26 08:35 result.tar.gz
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas      8661 Jul 26 08:35 runtime_log.err
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas       656 Jul 26 08:35 fK9LDmvQkz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmj1zKDmiQ5BSm.diag
[2025-07-26 08:35:51] -rw-r--r--. 1 boincer umatlas     21333 Jul 26 08:35 stderr.txt
[2025-07-26 08:35:51] HITS file was successfully produced:
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas 206380702 Jul 26 08:33 shared/HITS.pool.root.1
[2025-07-26 08:35:51]  *** Contents of shared directory: ***
[2025-07-26 08:35:51] total 344488
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas 144491682 Jul 26 05:12 ATLAS.root_0
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 05:12 start_atlas.sh
[2025-07-26 08:35:51] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 05:12 input.tar.gz
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas 206380702 Jul 26 08:33 HITS.pool.root.1
[2025-07-26 08:35:51] -rw-------. 1 boincer umatlas   1310720 Jul 26 08:35 result.tar.gz
08:35:53 (3135881): run_atlas exited; CPU time 46063.231497
08:35:53 (3135881): called boinc_finish(0)

</stderr_txt>
]]>

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