Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:55:06 (1857299): wrapper (7.7.26015): starting
04:55:06 (1857299): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 04:55:06] Arguments: --nthreads 8
[2025-07-26 04:55:06] Threads: 8
[2025-07-26 04:55:06] Checking for CVMFS
[2025-07-26 04:55:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 04:55:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 04:55:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 04:55:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 04:55:06] 2.13.1.0 1125174 2677 78844 148770 0 57 2839619 39288833 3664 16776704 0 7894152 99.997 97284 34769 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 04:55:06] CVMFS is ok
[2025-07-26 04:55:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 04:55:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 04:55:06] Further information can be found at the LHC@home message board.
[2025-07-26 04:55:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 04:55:06] Checking for apptainer binary...
[2025-07-26 04:55:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 04:55:06] Running /usr/bin/apptainer --version
[2025-07-26 04:55:06] apptainer version 1.4.1-1.el9
[2025-07-26 04:55:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 04:55:06] c-210-19.aglt2.org
[2025-07-26 04:55:06] apptainer works
[2025-07-26 04:55:06] Set ATHENA_PROC_NUMBER=8
[2025-07-26 04:55:06] Set ATHENA_CORE_NUMBER=8
[2025-07-26 04:55:06] Starting ATLAS job with PandaID=6745065972
[2025-07-26 04:55:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 06:47:02]  *** The last 200 lines of the pilot log: ***
[2025-07-26 06:47:02] 2025-07-26 10:46:25,507 | INFO     | executing command: lscpu
[2025-07-26 06:47:02] 2025-07-26 10:46:25,543 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 06:47:02] 2025-07-26 10:46:27,186 | INFO     | monitor loop #496: job 0:6745065972 is in state 'finished'
[2025-07-26 06:47:02] 2025-07-26 10:46:27,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,010 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 06:47:02] 2025-07-26 10:46:29,017 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2620.153249999999
[2025-07-26 06:47:02] 2025-07-26 10:46:29,025 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745065972/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,026 | INFO     | extracted standard info from prmon json
[2025-07-26 06:47:02] 2025-07-26 10:46:29,026 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 06:47:02] 2025-07-26 10:46:29,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 06:47:02] 2025-07-26 10:46:29,026 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 06:47:02] 2025-07-26 10:46:29,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 06:47:02] 2025-07-26 10:46:29,029 | INFO     | fitting pss+swap vs Time
[2025-07-26 06:47:02] 2025-07-26 10:46:29,030 | INFO     | sum of square deviations: 401533110.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,030 | INFO     | sum of deviations: 7461968106.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,031 | INFO     | mean x: 1753523436.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,031 | INFO     | mean y: 2505875.4495412842
[2025-07-26 06:47:02] 2025-07-26 10:46:29,031 | INFO     | -- intersect: -32584435591.35884
[2025-07-26 06:47:02] 2025-07-26 10:46:29,031 | INFO     | intersect: -32584435591.35884
[2025-07-26 06:47:02] 2025-07-26 10:46:29,031 | INFO     | chi2: 1.2829557785278338
[2025-07-26 06:47:02] 2025-07-26 10:46:29,032 | INFO     | sum of square deviations: 348769330.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,032 | INFO     | sum of deviations: 6972088604.5
[2025-07-26 06:47:02] 2025-07-26 10:46:29,032 | INFO     | mean x: 1753523283.5
[2025-07-26 06:47:02] 2025-07-26 10:46:29,032 | INFO     | mean y: 2504458.605769231
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | -- intersect: -35051379730.740166
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | intersect: -35051379730.740166
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | chi2: 1.2850329984754023
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | current chi2=1.2850329984754023 (change=-0.16190892798753015 %)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | right removable region: 103
[2025-07-26 06:47:02] 2025-07-26 10:46:29,033 | INFO     | sum of square deviations: 348769330.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,034 | INFO     | sum of deviations: -5463446425.499999
[2025-07-26 06:47:02] 2025-07-26 10:46:29,034 | INFO     | mean x: 1753523588.5
[2025-07-26 06:47:02] 2025-07-26 10:46:29,034 | INFO     | mean y: 2542199.3365384615
[2025-07-26 06:47:02] 2025-07-26 10:46:29,034 | INFO     | -- intersect: 27471362871.21229
[2025-07-26 06:47:02] 2025-07-26 10:46:29,034 | INFO     | intersect: 27471362871.21229
[2025-07-26 06:47:02] 2025-07-26 10:46:29,035 | INFO     | chi2: 0.04584918011576967
[2025-07-26 06:47:02] 2025-07-26 10:46:29,035 | INFO     | current chi2=0.04584918011576967 (change=96.42628523265387 %)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,035 | INFO     | sum of square deviations: 300842850.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | sum of deviations: -3717992212.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | mean x: 1753523741.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | mean y: 2536592.8282828284
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | -- intersect: 21673610419.562424
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | intersect: 21673610419.562424
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | chi2: 0.04098460540663433
[2025-07-26 06:47:02] 2025-07-26 10:46:29,036 | INFO     | current chi2=0.04098460540663433 (change=10.60994917870338 %)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,037 | INFO     | left removable region: 20
[2025-07-26 06:47:02] 2025-07-26 10:46:29,037 | INFO     | sum of square deviations: 177275882.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,037 | INFO     | sum of deviations: 987396569.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,037 | INFO     | mean x: 1753523863.0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | mean y: 2516721.0843373495
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | -- intersect: -9764313523.685373
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | intersect: -9764313523.685373
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | chi2: 0.00020400920152201037
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | -- intersect: -9764313523.685373
[2025-07-26 06:47:02] 2025-07-26 10:46:29,038 | INFO     | current memory leak: 5.57 B/s (using 83 data points, chi2=0.00)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | could have reported an average CPU frequency of 2601 MHz (7 samples)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | ..............................
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . Timing measurements:
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . get job = 0 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . initial setup = 2 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . payload setup = 6 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . stage-in = 0 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,039 | INFO     | . payload execution = 6638 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,040 | INFO     | . stage-out = 0 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,040 | INFO     | . log creation = 0 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,040 | INFO     | ..............................
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | 
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | job summary report
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | --------------------------------------------------
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | PanDA job id: 6745065972
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | task id: 45743349
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | errors: (none)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,150 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | pilot state: finished 
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | transexitcode: 0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | exeerrorcode: 0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | exeerrordiag: 
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | exitcode: 0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | exitmsg: OK
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | cpuconsumptiontime: 49042 s
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | nevents: 400
[2025-07-26 06:47:02] 2025-07-26 10:46:29,151 | INFO     | neventsw: 0
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | pid: 1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | pgrp: 1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | corecount: 8
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | event service: False
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | sizes: {0: 2396647, 1: 2397503, 5: 2397765, 12: 2397821, 6648: 2424991, 6649: 2424990, 6650: 2434172, 6653: 2434228, 6658: 2434422}
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | --------------------------------------------------
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | 
[2025-07-26 06:47:02] 2025-07-26 10:46:29,152 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-26 06:47:02] 2025-07-26 10:46:29,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 06:47:02] 2025-07-26 10:46:29,172 | INFO     | job 6745065972 has completed (purged errors)
[2025-07-26 06:47:02] 2025-07-26 10:46:29,173 | INFO     | overall cleanup function is called
[2025-07-26 06:47:02] 2025-07-26 10:46:30,181 | INFO     | --- collectZombieJob: --- 10, [1870021]
[2025-07-26 06:47:02] 2025-07-26 10:46:30,181 | INFO     | zombie collector waiting for pid 1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:30,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 06:47:02] 2025-07-26 10:46:30,181 | INFO     | collected zombie processes
[2025-07-26 06:47:02] 2025-07-26 10:46:30,181 | INFO     | will attempt to kill all subprocesses of pid=1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:30,407 | INFO     | process IDs to be killed: [1870021] (in reverse order)
[2025-07-26 06:47:02] 2025-07-26 10:46:30,468 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 06:47:02] 2025-07-26 10:46:30,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 06:47:02] 2025-07-26 10:46:30,474 | INFO     | did not find any defunct processes belonging to 1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:30,478 | INFO     | did not find any defunct processes belonging to 1870021
[2025-07-26 06:47:02] 2025-07-26 10:46:30,479 | INFO     | ready for new job
[2025-07-26 06:47:02] 2025-07-26 10:46:30,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 06:47:02] 2025-07-26 10:46:30,481 | INFO     | ***************************************
[2025-07-26 06:47:02] 2025-07-26 10:46:30,481 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 06:47:02] 2025-07-26 10:46:30,481 | INFO     | ***************************************
[2025-07-26 06:47:02] 2025-07-26 10:46:30,481 | INFO     | 
[2025-07-26 06:47:02] 2025-07-26 10:46:30,484 | INFO     | architecture information:
[2025-07-26 06:47:02] 2025-07-26 10:46:30,484 | INFO     | executing command: cat /etc/os-release
[2025-07-26 06:47:02] 2025-07-26 10:46:30,495 | INFO     | cat /etc/os-release:
[2025-07-26 06:47:02] NAME="CentOS Linux"
[2025-07-26 06:47:02] VERSION="7 (Core)"
[2025-07-26 06:47:02] ID="centos"
[2025-07-26 06:47:02] ID_LIKE="rhel fedora"
[2025-07-26 06:47:02] VERSION_ID="7"
[2025-07-26 06:47:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 06:47:02] ANSI_COLOR="0;31"
[2025-07-26 06:47:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 06:47:02] HOME_URL="https://www.centos.org/"
[2025-07-26 06:47:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 06:47:02] 
[2025-07-26 06:47:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 06:47:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 06:47:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 06:47:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 06:47:02] 
[2025-07-26 06:47:02] 2025-07-26 10:46:30,496 | INFO     | ***************************************
[2025-07-26 06:47:02] 2025-07-26 10:46:30,998 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-26 06:47:02] 2025-07-26 10:46:31,011 | INFO     | sufficient remaining disk space (52183433216 B)
[2025-07-26 06:47:02] 2025-07-26 10:46:31,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 06:47:02] 2025-07-26 10:46:31,011 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 06:47:02] 2025-07-26 10:46:31,011 | INFO     | update_server=False
[2025-07-26 06:47:02] 2025-07-26 10:46:31,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 06:47:02] 2025-07-26 10:46:31,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 06:47:02] 2025-07-26 10:46:31,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 06:47:02] 2025-07-26 10:46:31,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 06:47:02] 2025-07-26 10:46:31,013 | INFO     | aborting loop
[2025-07-26 06:47:02] 2025-07-26 10:46:31,370 | INFO     | all data control threads have been joined
[2025-07-26 06:47:02] 2025-07-26 10:46:31,910 | INFO     | all payload control threads have been joined
[2025-07-26 06:47:02] 2025-07-26 10:46:31,995 | INFO     | all job control threads have been joined
[2025-07-26 06:47:02] 2025-07-26 10:46:32,015 | INFO     | [job] retrieve thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,015 | INFO     | [payload] validate_post thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,018 | INFO     | [job] job monitor thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,018 | INFO     | [job] queue monitor thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 06:47:02] 2025-07-26 10:46:32,375 | INFO     | [data] control thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,526 | INFO     | [job] validate thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,549 | INFO     | [payload] failed_post thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,761 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,763 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,768 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:32,915 | INFO     | [payload] control thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:33,001 | INFO     | [job] control thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:33,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:33,513 | INFO     | [data] copytool_in thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:34,290 | INFO     | [data] copytool_out thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:35,018 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 06:47:02] 2025-07-26 10:46:35,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414858180416)>', '<ExcThread(monitor, started 140414224955136)>']
[2025-07-26 06:47:02] 2025-07-26 10:46:40,307 | INFO     | all workflow threads have been joined
[2025-07-26 06:47:02] 2025-07-26 10:46:40,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 06:47:02] 2025-07-26 10:46:40,307 | INFO     | traces error code: 0
[2025-07-26 06:47:02] 2025-07-26 10:46:40,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 06:47:02] 2025-07-26 10:47:01,970 | INFO     | PID=1860884 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | INFO     | .. there are 5 such processes running
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 06:47:02] 2025-07-26 10:47:01,971 | INFO     | [monitor] control thread has ended
[2025-07-26 06:47:02] 2025-07-26 10:47:02,094 [wrapper] ==== pilot stdout END ====
[2025-07-26 06:47:02] 2025-07-26 10:47:02,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 06:47:02] 2025-07-26 10:47:02,099 [wrapper] pilotpid: 1860884
[2025-07-26 06:47:02] 2025-07-26 10:47:02,101 [wrapper] Pilot exit status: 0
[2025-07-26 06:47:02] 2025-07-26 10:47:02,110 [wrapper] pandaids: 6745065972
[2025-07-26 06:47:02] 2025-07-26 10:47:02,152 [wrapper] cleanup supervisor_pilot 2060409 1860885
[2025-07-26 06:47:02] 2025-07-26 10:47:02,154 [wrapper] Test setup, not cleaning
[2025-07-26 06:47:02] 2025-07-26 10:47:02,157 [wrapper] apfmon messages muted
[2025-07-26 06:47:02] 2025-07-26 10:47:02,159 [wrapper] ==== wrapper stdout END ====
[2025-07-26 06:47:02] 2025-07-26 10:47:02,162 [wrapper] ==== wrapper stderr END ====
[2025-07-26 06:47:02]  *** Error codes and diagnostics ***
[2025-07-26 06:47:02]     "exeErrorCode": 0,
[2025-07-26 06:47:02]     "exeErrorDiag": "",
[2025-07-26 06:47:02]     "pilotErrorCode": 0,
[2025-07-26 06:47:02]     "pilotErrorDiag": "",
[2025-07-26 06:47:02]  *** Listing of results directory ***
[2025-07-26 06:47:02] total 353864
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 19:44 pilot3.tar.gz
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 19:46 queuedata.json
[2025-07-26 06:47:02] -rwx------. 1 boincer umatlas     36292 Jul 25 19:48 runpilot2-wrapper.sh
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas       100 Jul 26 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 06:47:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 04:55 run_atlas
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas       105 Jul 26 04:55 job.xml
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas 147823473 Jul 26 04:55 EVNT.45743347._001619.pool.root.1
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 04:55 start_atlas.sh
[2025-07-26 06:47:02] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 04:55 shared
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 04:55 input.tar.gz
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas         0 Jul 26 04:55 boinc_lockfile
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 04:55 pandaJob.out
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas    980133 Jul 26 04:55 agis_schedconf.cvmfs.json
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas   1593052 Jul 26 04:55 agis_ddmendpoints.agis.ALL.json
[2025-07-26 06:47:02] drwx------. 4 boincer umatlas      4096 Jul 26 04:55 pilot3
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas 208735958 Jul 26 06:45 HITS.45743349._028912.pool.root.1
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas       529 Jul 26 06:45 boinc_task_state.xml
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas        95 Jul 26 06:46 pilot_heartbeat.json
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas      1034 Jul 26 06:46 memory_monitor_summary.json
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas    321520 Jul 26 06:46 log.45743349._028912.job.log.tgz.1
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas      7806 Jul 26 06:46 heartbeat.json
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas      6709 Jul 26 06:46 init_data.xml
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas        27 Jul 26 06:46 wrapper_checkpoint.txt
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 06:46 boinc_mmap_file
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas       822 Jul 26 06:47 pilotlog.txt
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas    641311 Jul 26 06:47 log.45743349._028912.job.log.1
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas       357 Jul 26 06:47 output.list
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas       620 Jul 26 06:47 runtime_log
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas    983040 Jul 26 06:47 result.tar.gz
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 06:47 runtime_log.err
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas       652 Jul 26 06:47 NvcNDm4Jhz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXkQLDmYwcNVo.diag
[2025-07-26 06:47:02] -rw-r--r--. 1 boincer umatlas     21227 Jul 26 06:47 stderr.txt
[2025-07-26 06:47:02] HITS file was successfully produced:
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas 208735958 Jul 26 06:45 shared/HITS.pool.root.1
[2025-07-26 06:47:02]  *** Contents of shared directory: ***
[2025-07-26 06:47:02] total 349716
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas 147823473 Jul 26 04:55 ATLAS.root_0
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 04:55 start_atlas.sh
[2025-07-26 06:47:02] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 04:55 input.tar.gz
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas 208735958 Jul 26 06:45 HITS.pool.root.1
[2025-07-26 06:47:02] -rw-------. 1 boincer umatlas    983040 Jul 26 06:47 result.tar.gz
06:47:03 (1857299): run_atlas exited; CPU time 49182.774824
06:47:03 (1857299): called boinc_finish(0)

</stderr_txt>
]]>

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