Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:34:49 (3669950): wrapper (7.7.26015): starting
01:34:49 (3669950): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 01:34:49] Arguments: --nthreads 8
[2025-07-26 01:34:49] Threads: 8
[2025-07-26 01:34:49] Checking for CVMFS
[2025-07-26 01:34:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 01:34:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 01:34:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 01:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 01:34:51] 2.11.3.0 3635679 296846 231400 148769 3 275 43176095 45568000 14024 130560 0 1791609696 99.748 1569936384 18618 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-07-26 01:34:51] CVMFS is ok
[2025-07-26 01:34:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 01:34:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 01:34:51] Further information can be found at the LHC@home message board.
[2025-07-26 01:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 01:34:51] Checking for apptainer binary...
[2025-07-26 01:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 01:34:51] Running /usr/bin/apptainer --version
[2025-07-26 01:34:52] apptainer version 1.3.3-1.el9
[2025-07-26 01:34:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 01:34:52] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0008.triumf.lcg
[2025-07-26 01:34:52] apptainer works
[2025-07-26 01:34:52] Set ATHENA_PROC_NUMBER=8
[2025-07-26 01:34:52] Set ATHENA_CORE_NUMBER=8
[2025-07-26 01:34:52] Starting ATLAS job with PandaID=6745097955
[2025-07-26 01:34:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 01:41:28]  *** The last 200 lines of the pilot log: ***
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | WARNING  | wrong length of table data, x=[1753519071.0], y=[1838.0] (must be same and length>=4)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . Timing measurements:
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . get job = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . initial setup = 9 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload setup = 41 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . stage-in = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload execution = 61 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . stage-out = 1 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . log creation = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745097955/pilotlog.txt
[2025-07-26 01:41:28] 2025-07-26 08:40:54,608 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 01:41:28] - Log from pilotlog.txt -
[2025-07-26 01:41:28] 2025-07-26 08:40:54,591 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745097955/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | INFO     | extracted standard info from prmon json
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | WARNING  | wrong length of table data, x=[1753519071.0], y=[1838.0] (must be same and length>=4)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . Timing measurements:
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . get job = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . initial setup = 9 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload setup = 41 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . stage-in = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload execution = 61 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . stage-out = 1 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . log creation = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745097955/pilotlog.txt
[2025-07-26 01:41:28] 2025-07-26 08:40:54,609 | WARNING  | 
[2025-07-26 01:41:28] [begin log extracts]
[2025-07-26 01:41:28] - Log from pilotlog.txt -
[2025-07-26 01:41:28] 2025-07-26 08:40:54,591 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745097955/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | INFO     | extracted standard info from prmon json
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:41:28] 2025-07-26 08:40:54,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | WARNING  | wrong length of table data, x=[1753519071.0], y=[1838.0] (must be same and length>=4)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . Timing measurements:
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . get job = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . initial setup = 9 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload setup = 41 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . stage-in = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,594 | INFO     | . payload execution = 61 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . stage-out = 1 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | . log creation = 0 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | ..............................
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 01:41:28] 2025-07-26 08:40:54,595 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745097955/pilotlog.txt
[2025-07-26 01:41:28] [end log extracts]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,609 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,610 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 01:41:28] 2025-07-26 08:40:54,692 | INFO     | 
[2025-07-26 01:41:28] 2025-07-26 08:40:54,692 | INFO     | job summary report
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | --------------------------------------------------
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | PanDA job id: 6745097955
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | task id: 45743349
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 01:38:25,020 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | pilot state: failed 
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | transexitcode: 65
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | exeerrorcode: 65
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | exitcode: 65
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,693 | INFO     | cpuconsumptiontime: 18 s
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | nevents: 0
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | neventsw: 0
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | pid: 3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | pgrp: 3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | corecount: 8
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | event service: False
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | sizes: {0: 2396647, 1: 2397329, 2: 2397329, 3: 2397556, 13: 2397556, 25: 2397612, 30: 2398030, 36: 2398058, 107: 2421337, 108: 2421313, 109: 2425633, 111: 2425969,
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | --------------------------------------------------
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | 
[2025-07-26 01:41:28] 2025-07-26 08:40:54,694 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,957 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 01:41:28] 2025-07-26 08:40:54,957 | INFO     | job 6745097955 has completed (purged errors)
[2025-07-26 01:41:28] 2025-07-26 08:40:54,957 | INFO     | overall cleanup function is called
[2025-07-26 01:41:28] 2025-07-26 08:40:55,963 | INFO     | --- collectZombieJob: --- 10, [3679915]
[2025-07-26 01:41:28] 2025-07-26 08:40:55,963 | INFO     | zombie collector waiting for pid 3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:55,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 01:41:28] 2025-07-26 08:40:55,964 | INFO     | collected zombie processes
[2025-07-26 01:41:28] 2025-07-26 08:40:55,964 | INFO     | will attempt to kill all subprocesses of pid=3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:56,202 | INFO     | process IDs to be killed: [3679915] (in reverse order)
[2025-07-26 01:41:28] 2025-07-26 08:40:56,279 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 01:41:28] 2025-07-26 08:40:56,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 01:41:28] 2025-07-26 08:40:56,289 | INFO     | did not find any defunct processes belonging to 3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:56,297 | INFO     | did not find any defunct processes belonging to 3679915
[2025-07-26 01:41:28] 2025-07-26 08:40:56,297 | INFO     | ready for new job
[2025-07-26 01:41:28] 2025-07-26 08:40:56,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 01:41:28] 2025-07-26 08:40:56,299 | INFO     | ***************************************
[2025-07-26 01:41:28] 2025-07-26 08:40:56,299 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 01:41:28] 2025-07-26 08:40:56,299 | INFO     | ***************************************
[2025-07-26 01:41:28] 2025-07-26 08:40:56,299 | INFO     | 
[2025-07-26 01:41:28] 2025-07-26 08:40:56,321 | INFO     | architecture information:
[2025-07-26 01:41:28] 2025-07-26 08:40:56,341 | INFO     | executing command: cat /etc/os-release
[2025-07-26 01:41:28] 2025-07-26 08:40:56,398 | INFO     | cat /etc/os-release:
[2025-07-26 01:41:28] NAME="CentOS Linux"
[2025-07-26 01:41:28] VERSION="7 (Core)"
[2025-07-26 01:41:28] ID="centos"
[2025-07-26 01:41:28] ID_LIKE="rhel fedora"
[2025-07-26 01:41:28] VERSION_ID="7"
[2025-07-26 01:41:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 01:41:28] ANSI_COLOR="0;31"
[2025-07-26 01:41:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 01:41:28] HOME_URL="https://www.centos.org/"
[2025-07-26 01:41:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 01:41:28] 
[2025-07-26 01:41:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 01:41:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 01:41:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 01:41:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 01:41:28] 
[2025-07-26 01:41:28] 2025-07-26 08:40:56,398 | INFO     | ***************************************
[2025-07-26 01:41:28] 2025-07-26 08:40:56,901 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-26 01:41:28] 2025-07-26 08:40:57,064 | INFO     | sufficient remaining disk space (1302718316544 B)
[2025-07-26 01:41:28] 2025-07-26 08:40:57,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 01:41:28] 2025-07-26 08:40:57,064 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 01:41:28] 2025-07-26 08:40:57,064 | INFO     | update_server=False
[2025-07-26 01:41:28] 2025-07-26 08:40:57,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 01:41:28] 2025-07-26 08:40:57,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 01:41:28] 2025-07-26 08:40:57,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:41:28] 2025-07-26 08:40:57,505 | INFO     | aborting loop
[2025-07-26 01:41:28] 2025-07-26 08:40:57,562 | INFO     | all data control threads have been joined
[2025-07-26 01:41:28] 2025-07-26 08:40:58,070 | INFO     | [job] retrieve thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:58,184 | INFO     | all job control threads have been joined
[2025-07-26 01:41:28] 2025-07-26 08:40:58,305 | INFO     | all payload control threads have been joined
[2025-07-26 01:41:28] 2025-07-26 08:40:58,317 | INFO     | [payload] failed_post thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:58,511 | INFO     | [job] job monitor thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:58,567 | INFO     | [data] control thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:58,640 | INFO     | [job] validate thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,067 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,072 | INFO     | [data] copytool_out thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,089 | INFO     | [payload] validate_post thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,190 | INFO     | [job] control thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,245 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,311 | INFO     | [payload] control thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 01:41:28] 2025-07-26 08:40:59,348 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,533 | INFO     | [data] copytool_in thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:40:59,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:41:28] 2025-07-26 08:41:00,711 | INFO     | [job] queue monitor thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:41:03,328 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 01:41:28] 2025-07-26 08:41:03,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107832579904)>', '<ExcThread(monitor, started 140107042506496)>']
[2025-07-26 01:41:28] 2025-07-26 08:41:08,655 | INFO     | all workflow threads have been joined
[2025-07-26 01:41:28] 2025-07-26 08:41:08,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 01:41:28] 2025-07-26 08:41:08,656 | INFO     | traces error code: 0
[2025-07-26 01:41:28] 2025-07-26 08:41:08,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 01:41:28] 2025-07-26 08:41:27,079 | INFO     | PID=3673548 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 01:41:28] 2025-07-26 08:41:27,079 | INFO     | .. there are 26 such processes running
[2025-07-26 01:41:28] 2025-07-26 08:41:27,079 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 01:41:28] 2025-07-26 08:41:27,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 01:41:28] 2025-07-26 08:41:27,080 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 01:41:28] 2025-07-26 08:41:27,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 01:41:28] 2025-07-26 08:41:27,080 | INFO     | [monitor] control thread has ended
[2025-07-26 01:41:28] 2025-07-26 08:41:27,225 [wrapper] ==== pilot stdout END ====
[2025-07-26 01:41:28] 2025-07-26 08:41:27,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 01:41:28] 2025-07-26 08:41:27,229 [wrapper] pilotpid: 3673548
[2025-07-26 01:41:28] 2025-07-26 08:41:27,230 [wrapper] Pilot exit status: 0
[2025-07-26 01:41:28] 2025-07-26 08:41:27,386 [wrapper] pandaids: 6745097955
[2025-07-26 01:41:28] 2025-07-26 08:41:27,454 [wrapper] cleanup supervisor_pilot 3673554 3673549
[2025-07-26 01:41:28] 2025-07-26 08:41:27,457 [wrapper] Test setup, not cleaning
[2025-07-26 01:41:28] 2025-07-26 08:41:27,459 [wrapper] apfmon messages muted
[2025-07-26 01:41:28] 2025-07-26 08:41:27,461 [wrapper] ==== wrapper stdout END ====
[2025-07-26 01:41:28] 2025-07-26 08:41:27,462 [wrapper] ==== wrapper stderr END ====
[2025-07-26 01:41:28]  *** Error codes and diagnostics ***
[2025-07-26 01:41:28]     "exeErrorCode": 65,
[2025-07-26 01:41:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 01:41:28]     "pilotErrorCode": 1305,
[2025-07-26 01:41:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 01:41:28]  *** Listing of results directory ***
[2025-07-26 01:41:28] total 147036
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc    530466 Jul 25 22:25 pilot3.tar.gz
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc      5112 Jul 25 22:55 queuedata.json
[2025-07-26 01:41:28] -rwx------. 1 boinc boinc     36292 Jul 25 22:56 runpilot2-wrapper.sh
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc       100 Jul 26 01:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 01:41:28] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 01:34 run_atlas
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc       105 Jul 26 01:34 job.xml
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc 146479866 Jul 26 01:34 EVNT.45743347._001872.pool.root.1
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc    542897 Jul 26 01:34 input.tar.gz
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc      6447 Jul 26 01:34 init_data.xml
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc     15095 Jul 26 01:34 start_atlas.sh
[2025-07-26 01:41:28] drwxrwx--x. 2 boinc boinc      4096 Jul 26 01:34 shared
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc         0 Jul 26 01:34 boinc_lockfile
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc      2563 Jul 26 01:34 pandaJob.out
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc    980133 Jul 26 01:35 agis_schedconf.cvmfs.json
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc   1593052 Jul 26 01:35 agis_ddmendpoints.agis.ALL.json
[2025-07-26 01:41:28] drwx------. 4 boinc boinc      4096 Jul 26 01:36 pilot3
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc       525 Jul 26 01:38 boinc_task_state.xml
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc       970 Jul 26 01:38 memory_monitor_summary.json
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc     21721 Jul 26 01:38 log.45743349._033157.job.log.tgz.1
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc      8387 Jul 26 01:40 heartbeat.json
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc        95 Jul 26 01:40 pilot_heartbeat.json
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc      8192 Jul 26 01:41 boinc_mmap_file
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc        23 Jul 26 01:41 wrapper_checkpoint.txt
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc       823 Jul 26 01:41 pilotlog.txt
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc     82697 Jul 26 01:41 log.45743349._033157.job.log.1
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc       188 Jul 26 01:41 output.list
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc       620 Jul 26 01:41 runtime_log
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc    122880 Jul 26 01:41 result.tar.gz
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc      8648 Jul 26 01:41 runtime_log.err
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc       645 Jul 26 01:41 oBiKDm54mz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8PRLDmmXN1In.diag
[2025-07-26 01:41:28] -rw-r--r--. 1 boinc boinc     22022 Jul 26 01:41 stderr.txt
[2025-07-26 01:41:28] No HITS result produced
[2025-07-26 01:41:28]  *** Contents of shared directory: ***
[2025-07-26 01:41:28] total 143720
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc 146479866 Jul 26 01:34 ATLAS.root_0
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc    542897 Jul 26 01:34 input.tar.gz
[2025-07-26 01:41:28] -rw-r--r--. 2 boinc boinc     15095 Jul 26 01:34 start_atlas.sh
[2025-07-26 01:41:28] -rw-------. 1 boinc boinc    122880 Jul 26 01:41 result.tar.gz
01:41:29 (3669950): run_atlas exited; CPU time 30.235611
01:41:29 (3669950): called boinc_finish(0)

</stderr_txt>
]]>

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