Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 04:24:15 (6788): Detected: vboxwrapper 26206
2025-07-26 04:24:15 (6788): Detected: BOINC client v7.16.20
2025-07-26 04:24:19 (6788): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-07-26 04:24:19 (6788): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 04:24:20 (6788): Create VM. (boinc_f0700421b5d4f7fd, slot#1)
2025-07-26 04:24:21 (6788): Setting Memory Size for VM. (4400MB)
2025-07-26 04:24:21 (6788): Setting CPU Count for VM. (4)
2025-07-26 04:24:21 (6788): Setting Chipset Options for VM.
2025-07-26 04:24:22 (6788): Setting Graphics Controller Options for VM.
2025-07-26 04:24:22 (6788): Setting Boot Options for VM.
2025-07-26 04:24:22 (6788): Setting Network Configuration for NAT.
2025-07-26 04:24:22 (6788): Enabling VM Network Access.
2025-07-26 04:24:23 (6788): Disabling USB Support for VM.
2025-07-26 04:24:23 (6788): Disabling COM Port Support for VM.
2025-07-26 04:24:23 (6788): Disabling LPT Port Support for VM.
2025-07-26 04:24:24 (6788): Disabling Audio Support for VM.
2025-07-26 04:24:24 (6788): Disabling Clipboard Support for VM.
2025-07-26 04:24:24 (6788): Disabling Drag and Drop Support for VM.
2025-07-26 04:24:24 (6788): Adding storage controller(s) to VM.
2025-07-26 04:24:25 (6788): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 04:24:30 (6788): Adding VirtualBox Guest Additions to VM.
2025-07-26 04:24:32 (6788): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 04:24:33 (6788): forwarding host port 56478 to guest port 80
2025-07-26 04:24:35 (6788): Enabling remote desktop for VM.
2025-07-26 04:24:36 (6788): Required extension pack not installed, remote desktop not enabled.
2025-07-26 04:24:36 (6788): Enabling shared directory for VM.
2025-07-26 04:24:38 (6788): Starting VM using VBoxManage interface. (boinc_f0700421b5d4f7fd, slot#1)
2025-07-26 04:24:46 (6788): Successfully started VM. (PID = '11212')
2025-07-26 04:24:46 (6788): Reporting VM Process ID to BOINC.
2025-07-26 04:24:46 (6788): Guest Log: BIOS: VirtualBox 6.1.32
2025-07-26 04:24:46 (6788): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 04:24:46 (6788): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 04:24:46 (6788): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 04:24:46 (6788): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 04:24:46 (6788): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 04:24:46 (6788): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 04:24:46 (6788): Detected: Web Application Enabled (http://localhost:56478)
2025-07-26 04:24:46 (6788): Preference change detected
2025-07-26 04:24:46 (6788): Setting CPU throttle for VM. (50%)
2025-07-26 04:24:48 (6788): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 04:25:32 (6788): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 04:25:32 (6788): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 04:25:32 (6788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 04:25:44 (6788): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 04:25:44 (6788): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 04:26:01 (6788): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 04:26:01 (6788): Guest Log: 00:00:00.000336 main     Log opened 2025-07-26T04:25:59.081522000Z
2025-07-26 04:26:01 (6788): Guest Log: 00:00:00.000515 main     OS Product: Linux
2025-07-26 04:26:01 (6788): Guest Log: 00:00:00.000592 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 04:26:02 (6788): Guest Log: 00:00:00.000643 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 04:26:02 (6788): Guest Log: 00:00:00.000692 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 04:26:02 (6788): Guest Log: 00:00:00.000694 main     Process ID: 1272
2025-07-26 04:26:02 (6788): Guest Log: 00:00:00.000695 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 04:26:02 (6788): Guest Log: 00:00:00.002873 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 04:26:02 (6788): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 04:26:02 (6788): Guest Log: [INFO] Mounting shared directory
2025-07-26 04:26:02 (6788): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 04:26:11 (6788): Guest Log: 00:00:10.006025 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 656 930 000ns (GuestNow=1 753 518 370 743 539 000 ns GuestLast=1 753 503 959 086 609 000 ns fSetTimeLastLoop=true )
2025-07-26 04:28:01 (6788): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 04:28:01 (6788): Guest Log: [INFO] Detected branch: prod
2025-07-26 04:28:04 (6788): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 04:28:04 (6788): Guest Log: Copying input files
2025-07-26 04:28:08 (6788): Guest Log: Copied input files into RunAtlas.
2025-07-26 04:28:08 (6788): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 04:28:08 (6788): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 04:28:08 (6788): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 04:28:08 (6788): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 04:30:06 (6788): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 04:30:09 (6788): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 04:30:09 (6788): Guest Log: 2.6.3.0 1591 3 32208 148769 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 04:30:11 (6788): Guest Log: copied the webapp to /var/www
2025-07-26 04:30:11 (6788): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-26 04:30:11 (6788): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-26 04:30:14 (6788): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 04:30:14 (6788): Guest Log:  *** Starting ATLAS job. (PandaID=6745097793 taskID=45743349) ***
2025-07-26 06:04:49 (6788): Status Report: Elapsed Time: '6000.534306'
2025-07-26 06:04:49 (6788): Status Report: CPU Time: '10662.059946'
2025-07-26 07:44:52 (6788): Status Report: Elapsed Time: '12000.534306'
2025-07-26 07:44:52 (6788): Status Report: CPU Time: '25056.615418'
2025-07-26 09:24:55 (6788): Status Report: Elapsed Time: '18000.534306'
2025-07-26 09:24:55 (6788): Status Report: CPU Time: '39453.464105'
2025-07-26 11:04:57 (6788): Status Report: Elapsed Time: '24000.534306'
2025-07-26 11:04:57 (6788): Status Report: CPU Time: '53849.158385'
2025-07-26 12:45:00 (6788): Status Report: Elapsed Time: '30000.534306'
2025-07-26 12:45:00 (6788): Status Report: CPU Time: '68242.434649'
2025-07-26 14:25:03 (6788): Status Report: Elapsed Time: '36000.534306'
2025-07-26 14:25:03 (6788): Status Report: CPU Time: '82634.166503'
2025-07-26 16:05:06 (6788): Status Report: Elapsed Time: '42000.534306'
2025-07-26 16:05:06 (6788): Status Report: CPU Time: '96976.274439'
2025-07-26 17:45:09 (6788): Status Report: Elapsed Time: '48000.534306'
2025-07-26 17:45:09 (6788): Status Report: CPU Time: '111370.299508'
2025-07-26 18:20:29 (6788): Guest Log:  *** Job finished ***
2025-07-26 18:20:29 (6788): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:02,004 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:02,005 | INFO     | traces error code: 0
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:02,005 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,668 | INFO     | PID=6019 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,670 | INFO     | found 0 job(s) in 20 queues
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,671 | INFO     | [monitor] control thread has ended
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,888 [wrapper] ==== pilot stdout END ====
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,897 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,906 [wrapper] pilotpid: 6019
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:22,915 [wrapper] Pilot exit status: 0
2025-07-26 18:20:29 (6788): Guest Log: ./runpilot2-wrapper.sh: line 1018: /usr/bin/xargs: Input/output error
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,746 [wrapper] pandaids: 
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,804 [wrapper] cleanup supervisor_pilot 19544 6020
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,815 [wrapper] Test setup, not cleaning
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,825 [wrapper] apfmon messages muted
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,835 [wrapper] ==== wrapper stdout END ====
2025-07-26 18:20:29 (6788): Guest Log: 2025-07-26 22:20:24,844 [wrapper] ==== wrapper stderr END ====
2025-07-26 18:20:29 (6788): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 18:20:29 (6788): Guest Log:     "exeErrorCode": 68,
2025-07-26 18:20:29 (6788): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-07-26 18:20:29 (6788): Guest Log:     "pilotErrorCode": 1305,
2025-07-26 18:20:29 (6788): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-07-26 18:20:29 (6788): Guest Log:  *** Listing of results directory ***
2025-07-26 18:20:29 (6788): Guest Log: total 8904
2025-07-26 18:20:29 (6788): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 26 05:25 pilot3.tar.gz
2025-07-26 18:20:29 (6788): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 26 05:44 queuedata.json
2025-07-26 18:20:29 (6788): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 26 05:44 runpilot2-wrapper.sh
2025-07-26 18:20:29 (6788): Guest Log: -rwxr-xr-x. 1 atlas atlas    6050 Jul 26 08:28 init_data.xml
2025-07-26 18:20:29 (6788): Guest Log: -rwxr-xr-x. 1 atlas atlas  542895 Jul 26 08:28 input.tar.gz
2025-07-26 18:20:29 (6788): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 26 08:28 start_atlas.sh
2025-07-26 18:20:29 (6788): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 26 08:28 EVNT.45743347._001863.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 18:20:29 (6788): Guest Log: -rw-r--r--. 1 atlas atlas    2562 Jul 26 08:30 pandaJob.out
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas  980133 Jul 26 08:36 agis_schedconf.cvmfs.json
2025-07-26 18:20:29 (6788): Guest Log: drwx------. 4 atlas atlas    4096 Jul 26 08:36 pilot3
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas    1037 Jul 26 22:16 memory_monitor_summary.json
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas  530218 Jul 26 22:17 log.45743349._033021.job.log.tgz.1
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas       0 Jul 26 22:17 agis_ddmendpoints.agis.ALL.json
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas       0 Jul 26 22:17 cric_ddmendpoints.json
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas   10739 Jul 26 22:19 heartbeat.json
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas      95 Jul 26 22:20 pilot_heartbeat.json
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas     744 Jul 26 22:20 pilotlog.txt
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas 2919821 Jul 26 22:20 log.45743349._033021.job.log.1
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas     188 Jul 26 22:20 output.list
2025-07-26 18:20:29 (6788): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 26 22:20 runtime_log
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas 3471360 Jul 26 22:20 result.tar.gz
2025-07-26 18:20:29 (6788): Guest Log: -rw-------. 1 atlas atlas     665 Jul 26 22:20 xsEODm9smz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6NRLDml8xvdm.diag
2025-07-26 18:20:29 (6788): Guest Log: -rw-r--r--. 1 atlas atlas    8457 Jul 26 22:20 runtime_log.err
2025-07-26 18:20:29 (6788): Guest Log: Looking for outputfile HITS.45743349._033021.pool.root.1
2025-07-26 18:20:29 (6788): Guest Log: No HITS file was produced
2025-07-26 18:20:29 (6788): Guest Log: Successfully finished the ATLAS job!
2025-07-26 18:20:29 (6788): Guest Log: Copying the results back to the shared directory!
2025-07-26 18:20:29 (6788): Guest Log:  *** Contents of shared directory: ***
2025-07-26 18:20:29 (6788): Guest Log: total 145220
2025-07-26 18:20:29 (6788): Guest Log: -rwxrwxrwx. 1 root root 144659799 Jul 26 08:24 ATLAS.root_0
2025-07-26 18:20:29 (6788): Guest Log: -rwxrwxrwx. 1 root root      6050 Jul 26 08:24 init_data.xml
2025-07-26 18:20:29 (6788): Guest Log: -rwxrwxrwx. 1 root root    542895 Jul 26 08:23 input.tar.gz
2025-07-26 18:20:29 (6788): Guest Log: -rwxrwxrwx. 1 root root   3471360 Jul 26 22:20 result.tar.gz
2025-07-26 18:20:29 (6788): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 08:23 start_atlas.sh
2025-07-26 18:20:29 (6788): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 18:20:29 (6788): VM Completion File Detected.
2025-07-26 18:20:29 (6788): Powering off VM.
2025-07-26 18:20:31 (6788): Successfully stopped VM.
2025-07-26 18:20:31 (6788): Deregistering VM. (boinc_f0700421b5d4f7fd, slot#1)
2025-07-26 18:20:32 (6788): Removing network bandwidth throttle group from VM.
2025-07-26 18:20:33 (6788): Removing VM from VirtualBox.
18:20:39 (6788): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN