Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:12:12 (2694439): wrapper (7.7.26015): starting
04:12:12 (2694439): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 04:12:12] Arguments: --nthreads 8
[2025-07-26 04:12:12] Threads: 8
[2025-07-26 04:12:12] Checking for CVMFS
[2025-07-26 04:12:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 04:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 04:12:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 04:12:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 04:12:12] 2.13.0.0 79137 22326 303648 148768 3 540 25521935 40960001 26718 16776704 1 186925871 99.624 212579051 29755 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 04:12:12] CVMFS is ok
[2025-07-26 04:12:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 04:12:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 04:12:12] Further information can be found at the LHC@home message board.
[2025-07-26 04:12:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 04:12:12] Checking for apptainer binary...
[2025-07-26 04:12:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 04:12:12] Running /usr/bin/apptainer --version
[2025-07-26 04:12:12] apptainer version 1.4.1-1.el9
[2025-07-26 04:12:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 04:12:12] c8-7-6.aglt2.org
[2025-07-26 04:12:12] apptainer works
[2025-07-26 04:12:12] Set ATHENA_PROC_NUMBER=8
[2025-07-26 04:12:12] Set ATHENA_CORE_NUMBER=8
[2025-07-26 04:12:12] Starting ATLAS job with PandaID=6745093181
[2025-07-26 04:12:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 05:15:45]  *** The last 200 lines of the pilot log: ***
[2025-07-26 05:15:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 05:15:45]  replicas=None
[2025-07-26 05:15:45]  scope=mc23_13p6TeV
[2025-07-26 05:15:45]  status=None
[2025-07-26 05:15:45]  status_code=0
[2025-07-26 05:15:45]  storage_token=
[2025-07-26 05:15:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745093181/log.45743349._030394.job.log.tgz.1
[2025-07-26 05:15:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/39/log.45743349._030394.job.log.tgz.1
[2025-07-26 05:15:45]  workdir=None
[2025-07-26 05:15:45] ]
[2025-07-26 05:15:45] 2025-07-26 09:15:01,674 | INFO     | transferring file log.45743349._030394.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745093181/log.45743349._030394.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 05:15:45] 2025-07-26 09:15:01,674 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745093181/log.45743349._030394.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._030394.job
[2025-07-26 05:15:45] 2025-07-26 09:15:01,712 | INFO     | adding to output.list: log.45743349._030394.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/39/log.45743349._030394.job.log.tg
[2025-07-26 05:15:45] 2025-07-26 09:15:01,713 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 05:15:45] 2025-07-26 09:15:01,713 | INFO     | summary of transferred files:
[2025-07-26 05:15:45] 2025-07-26 09:15:01,713 | INFO     |  -- lfn=log.45743349._030394.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 05:15:45] 2025-07-26 09:15:01,713 | INFO     | stage-out finished correctly
[2025-07-26 05:15:45] 2025-07-26 09:15:01,940 | WARNING  | process 2705113 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 05:15:45] 2025-07-26 09:15:01,940 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745093181/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 05:15:45] 2025-07-26 09:15:02,026 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 05:15:45] 2025-07-26 09:15:02,529 | INFO     | number of running child processes to parent process 2705113: 1
[2025-07-26 05:15:45] 2025-07-26 09:15:02,530 | INFO     | maximum number of monitored processes: 6
[2025-07-26 05:15:45] 2025-07-26 09:15:04,607 | INFO     | job 6745093181 has state=finished
[2025-07-26 05:15:45] 2025-07-26 09:15:04,607 | INFO     | preparing for final server update for job 6745093181 in state='finished'
[2025-07-26 05:15:45] 2025-07-26 09:15:04,608 | INFO     | this job has now completed (state=finished)
[2025-07-26 05:15:45] 2025-07-26 09:15:04,608 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 05:15:45] 2025-07-26 09:15:04,608 | INFO     | log transfer has been attempted: DONE
[2025-07-26 05:15:45] 2025-07-26 09:15:04,608 | INFO     | job 6745093181 has finished - writing final server update
[2025-07-26 05:15:45] 2025-07-26 09:15:04,608 | INFO     | total number of processed events: 400 (read)
[2025-07-26 05:15:45] 2025-07-26 09:15:04,609 | INFO     | executing command: lscpu
[2025-07-26 05:15:45] 2025-07-26 09:15:04,672 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 05:15:45] 2025-07-26 09:15:05,034 | INFO     | monitor loop #270: job 0:6745093181 is in state 'finished'
[2025-07-26 05:15:45] 2025-07-26 09:15:05,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:15:45] 2025-07-26 09:15:07,538 | INFO     | monitor loop #271: job 0:6745093181 is in state 'finished'
[2025-07-26 05:15:45] 2025-07-26 09:15:07,538 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:15:45] 2025-07-26 09:15:10,041 | INFO     | monitor loop #272: job 0:6745093181 is in state 'finished'
[2025-07-26 05:15:45] 2025-07-26 09:15:10,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,273 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 05:15:45] 2025-07-26 09:15:11,292 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3664.8478906249993
[2025-07-26 05:15:45] 2025-07-26 09:15:11,306 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745093181/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,306 | INFO     | extracted standard info from prmon json
[2025-07-26 05:15:45] 2025-07-26 09:15:11,306 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 05:15:45] 2025-07-26 09:15:11,306 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 05:15:45] 2025-07-26 09:15:11,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 05:15:45] 2025-07-26 09:15:11,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | fitting pss+swap vs Time
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | sum of square deviations: 48810217.5
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | sum of deviations: -1038674084.0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | mean x: 1753519509.5
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | mean y: 2187497.5555555555
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | -- intersect: 37316818810.27285
[2025-07-26 05:15:45] 2025-07-26 09:15:11,308 | INFO     | intersect: 37316818810.27285
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | chi2: 0.014944257078579585
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | -- intersect: 37316818810.27285
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | current memory leak: -21.28 B/s (using 54 data points, chi2=0.01)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | could have reported an average CPU frequency of 3729 MHz (6 samples)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | ..............................
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . Timing measurements:
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . get job = 0 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . initial setup = 2 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . payload setup = 11 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . stage-in = 0 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . payload execution = 3717 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . stage-out = 0 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | . log creation = 0 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,309 | INFO     | ..............................
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | 
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | job summary report
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | --------------------------------------------------
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | PanDA job id: 6745093181
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | task id: 45743349
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | errors: (none)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | pilot state: finished 
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | transexitcode: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | exeerrorcode: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | exeerrordiag: 
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | exitcode: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | exitmsg: OK
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | cpuconsumptiontime: 27058 s
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | nevents: 400
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | neventsw: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | pid: 2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | pgrp: 2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | corecount: 8
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | event service: False
[2025-07-26 05:15:45] 2025-07-26 09:15:11,368 | INFO     | sizes: {0: 2397475, 7: 2397737, 11: 2397765, 3733: 2423667, 3734: 2432721, 3743: 2432859}
[2025-07-26 05:15:45] 2025-07-26 09:15:11,369 | INFO     | --------------------------------------------------
[2025-07-26 05:15:45] 2025-07-26 09:15:11,369 | INFO     | 
[2025-07-26 05:15:45] 2025-07-26 09:15:11,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 05:15:45] 2025-07-26 09:15:11,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | job 6745093181 has completed (purged errors)
[2025-07-26 05:15:45] 2025-07-26 09:15:11,396 | INFO     | overall cleanup function is called
[2025-07-26 05:15:45] 2025-07-26 09:15:12,404 | INFO     | --- collectZombieJob: --- 10, [2705113]
[2025-07-26 05:15:45] 2025-07-26 09:15:12,404 | INFO     | zombie collector waiting for pid 2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:12,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 05:15:45] 2025-07-26 09:15:12,404 | INFO     | collected zombie processes
[2025-07-26 05:15:45] 2025-07-26 09:15:12,404 | INFO     | will attempt to kill all subprocesses of pid=2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:12,884 | INFO     | process IDs to be killed: [2705113] (in reverse order)
[2025-07-26 05:15:45] 2025-07-26 09:15:13,085 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 05:15:45] 2025-07-26 09:15:13,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 05:15:45] 2025-07-26 09:15:13,120 | INFO     | did not find any defunct processes belonging to 2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:13,149 | INFO     | did not find any defunct processes belonging to 2705113
[2025-07-26 05:15:45] 2025-07-26 09:15:13,149 | INFO     | ready for new job
[2025-07-26 05:15:45] 2025-07-26 09:15:13,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 05:15:45] 2025-07-26 09:15:13,151 | INFO     | ***************************************
[2025-07-26 05:15:45] 2025-07-26 09:15:13,151 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 05:15:45] 2025-07-26 09:15:13,151 | INFO     | ***************************************
[2025-07-26 05:15:45] 2025-07-26 09:15:13,151 | INFO     | 
[2025-07-26 05:15:45] 2025-07-26 09:15:13,178 | INFO     | architecture information:
[2025-07-26 05:15:45] 2025-07-26 09:15:13,179 | INFO     | executing command: cat /etc/os-release
[2025-07-26 05:15:45] 2025-07-26 09:15:13,199 | INFO     | cat /etc/os-release:
[2025-07-26 05:15:45] NAME="CentOS Linux"
[2025-07-26 05:15:45] VERSION="7 (Core)"
[2025-07-26 05:15:45] ID="centos"
[2025-07-26 05:15:45] ID_LIKE="rhel fedora"
[2025-07-26 05:15:45] VERSION_ID="7"
[2025-07-26 05:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 05:15:45] ANSI_COLOR="0;31"
[2025-07-26 05:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 05:15:45] HOME_URL="https://www.centos.org/"
[2025-07-26 05:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 05:15:45] 
[2025-07-26 05:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 05:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 05:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 05:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 05:15:45] 
[2025-07-26 05:15:45] 2025-07-26 09:15:13,199 | INFO     | ***************************************
[2025-07-26 05:15:45] 2025-07-26 09:15:13,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 05:15:45] 2025-07-26 09:15:13,726 | INFO     | sufficient remaining disk space (171526062080 B)
[2025-07-26 05:15:45] 2025-07-26 09:15:13,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 05:15:45] 2025-07-26 09:15:13,727 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 05:15:45] 2025-07-26 09:15:13,727 | INFO     | update_server=False
[2025-07-26 05:15:45] 2025-07-26 09:15:13,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 05:15:45] 2025-07-26 09:15:13,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:15:45] 2025-07-26 09:15:13,728 | INFO     | aborting loop
[2025-07-26 05:15:45] 2025-07-26 09:15:13,856 | INFO     | all job control threads have been joined
[2025-07-26 05:15:45] 2025-07-26 09:15:14,011 | INFO     | all payload control threads have been joined
[2025-07-26 05:15:45] 2025-07-26 09:15:14,284 | INFO     | all data control threads have been joined
[2025-07-26 05:15:45] 2025-07-26 09:15:14,732 | INFO     | [job] retrieve thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:14,733 | INFO     | [job] job monitor thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:14,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 05:15:45] 2025-07-26 09:15:14,861 | INFO     | [job] control thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:14,958 | INFO     | [payload] failed_post thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:14,979 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,016 | INFO     | [payload] control thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,167 | INFO     | [data] copytool_in thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,291 | INFO     | [data] control thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,480 | INFO     | [job] validate thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,814 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,872 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:15,935 | INFO     | [payload] validate_post thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:16,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:15:45] 2025-07-26 09:15:16,806 | INFO     | [data] copytool_out thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:17,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 05:15:45] 2025-07-26 09:15:17,385 | INFO     | [job] queue monitor thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:21,111 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 05:15:45] 2025-07-26 09:15:22,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996065920832)>', '<ExcThread(monitor, started 139995549505280)>']
[2025-07-26 05:15:45] 2025-07-26 09:15:27,911 | INFO     | all workflow threads have been joined
[2025-07-26 05:15:45] 2025-07-26 09:15:27,911 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 05:15:45] 2025-07-26 09:15:27,912 | INFO     | traces error code: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:27,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 05:15:45] 2025-07-26 09:15:44,640 | INFO     | PID=2698092 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 05:15:45] 2025-07-26 09:15:44,640 | INFO     | .. there are 51 such processes running
[2025-07-26 05:15:45] 2025-07-26 09:15:44,641 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 05:15:45] 2025-07-26 09:15:44,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 05:15:45] 2025-07-26 09:15:44,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 05:15:45] 2025-07-26 09:15:44,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 05:15:45] 2025-07-26 09:15:44,641 | INFO     | [monitor] control thread has ended
[2025-07-26 05:15:45] 2025-07-26 09:15:44,797 [wrapper] ==== pilot stdout END ====
[2025-07-26 05:15:45] 2025-07-26 09:15:44,806 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 05:15:45] 2025-07-26 09:15:44,811 [wrapper] pilotpid: 2698092
[2025-07-26 05:15:45] 2025-07-26 09:15:44,814 [wrapper] Pilot exit status: 0
[2025-07-26 05:15:45] 2025-07-26 09:15:44,841 [wrapper] pandaids: 6745093181
[2025-07-26 05:15:45] 2025-07-26 09:15:45,009 [wrapper] cleanup supervisor_pilot 3120194 2698093
[2025-07-26 05:15:45] 2025-07-26 09:15:45,013 [wrapper] Test setup, not cleaning
[2025-07-26 05:15:45] 2025-07-26 09:15:45,017 [wrapper] apfmon messages muted
[2025-07-26 05:15:45] 2025-07-26 09:15:45,020 [wrapper] ==== wrapper stdout END ====
[2025-07-26 05:15:45] 2025-07-26 09:15:45,024 [wrapper] ==== wrapper stderr END ====
[2025-07-26 05:15:45]  *** Error codes and diagnostics ***
[2025-07-26 05:15:45]     "exeErrorCode": 0,
[2025-07-26 05:15:45]     "exeErrorDiag": "",
[2025-07-26 05:15:45]     "pilotErrorCode": 0,
[2025-07-26 05:15:45]     "pilotErrorDiag": "",
[2025-07-26 05:15:45]  *** Listing of results directory ***
[2025-07-26 05:15:45] total 429604
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 21:05 pilot3.tar.gz
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 21:49 queuedata.json
[2025-07-26 05:15:45] -rwx------. 1 boincer umatlas     36292 Jul 25 21:49 runpilot2-wrapper.sh
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas       100 Jul 26 04:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 05:15:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 04:12 run_atlas
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas       105 Jul 26 04:12 job.xml
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas 227371958 Jul 26 04:12 EVNT.45743347._001699.pool.root.1
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 04:12 start_atlas.sh
[2025-07-26 05:15:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 04:12 shared
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 04:12 input.tar.gz
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas         0 Jul 26 04:12 boinc_lockfile
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 04:12 pandaJob.out
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas    980017 Jul 26 04:12 agis_schedconf.cvmfs.json
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas   1593052 Jul 26 04:12 agis_ddmendpoints.agis.ALL.json
[2025-07-26 05:15:45] drwx------. 4 boincer umatlas      4096 Jul 26 04:12 pilot3
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas      7161 Jul 26 05:12 init_data.xml
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas 207313761 Jul 26 05:14 HITS.45743349._030394.pool.root.1
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas       530 Jul 26 05:14 boinc_task_state.xml
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas      1032 Jul 26 05:14 memory_monitor_summary.json
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas    295274 Jul 26 05:15 log.45743349._030394.job.log.tgz.1
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas      7773 Jul 26 05:15 heartbeat.json
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 05:15 boinc_mmap_file
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas        27 Jul 26 05:15 wrapper_checkpoint.txt
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas        95 Jul 26 05:15 pilot_heartbeat.json
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas       823 Jul 26 05:15 pilotlog.txt
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas    380911 Jul 26 05:15 log.45743349._030394.job.log.1
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas       357 Jul 26 05:15 output.list
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas       620 Jul 26 05:15 runtime_log
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas    696320 Jul 26 05:15 result.tar.gz
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas       650 Jul 26 05:15 uDGLDm1Djz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXzQLDmGStEtn.diag
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas      8650 Jul 26 05:15 runtime_log.err
[2025-07-26 05:15:45] -rw-r--r--. 1 boincer umatlas     21925 Jul 26 05:15 stderr.txt
[2025-07-26 05:15:45] HITS file was successfully produced:
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas 207313761 Jul 26 05:14 shared/HITS.pool.root.1
[2025-07-26 05:15:45]  *** Contents of shared directory: ***
[2025-07-26 05:15:45] total 425736
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas 227371958 Jul 26 04:12 ATLAS.root_0
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 04:12 start_atlas.sh
[2025-07-26 05:15:45] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 04:12 input.tar.gz
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas 207313761 Jul 26 05:14 HITS.pool.root.1
[2025-07-26 05:15:45] -rw-------. 1 boincer umatlas    696320 Jul 26 05:15 result.tar.gz
05:15:46 (2694439): run_atlas exited; CPU time 27139.504819
05:15:46 (2694439): called boinc_finish(0)

</stderr_txt>
]]>

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