Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:45:59 (3703387): wrapper (7.7.26015): starting
20:45:59 (3703387): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 20:45:59] Arguments: --nthreads 4
[2025-07-26 20:45:59] Threads: 4
[2025-07-26 20:45:59] Checking for CVMFS
[2025-07-26 20:45:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 20:45:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 20:45:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 20:45:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 20:45:59] 2.9.2.0 2645308 3031 91732 148786 0 57 34909376 36864001 0 130560 0 2802883 99.991 111901 3650 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-26 20:45:59] CVMFS is ok
[2025-07-26 20:45:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 20:45:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 20:45:59] Further information can be found at the LHC@home message board.
[2025-07-26 20:45:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 20:45:59] Checking for apptainer binary...
[2025-07-26 20:45:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 20:45:59] Running /usr/bin/apptainer --version
[2025-07-26 20:45:59] apptainer version 1.4.1-1.1
[2025-07-26 20:45:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 20:45:59] thA350
[2025-07-26 20:45:59] apptainer works
[2025-07-26 20:45:59] Set ATHENA_PROC_NUMBER=4
[2025-07-26 20:45:59] Set ATHENA_CORE_NUMBER=4
[2025-07-26 20:45:59] Starting ATLAS job with PandaID=6745093151
[2025-07-26 20:45:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:55:18]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:55:18]  protocol_id=None
[2025-07-26 21:55:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 21:55:18]  replicas=None
[2025-07-26 21:55:18]  scope=mc23_13p6TeV
[2025-07-26 21:55:18]  status=None
[2025-07-26 21:55:18]  status_code=0
[2025-07-26 21:55:18]  storage_token=
[2025-07-26 21:55:18]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745093151/log.45743349._030364.job.log.tgz.1
[2025-07-26 21:55:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/84/log.45743349._030364.job.log.tgz.1
[2025-07-26 21:55:18]  workdir=None
[2025-07-26 21:55:18] ]
[2025-07-26 21:55:18] 2025-07-26 19:54:53,721 | INFO     | transferring file log.45743349._030364.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745093151/log.45743349._030364.job.log.tgz.1 to /local/data/boinc/
[2025-07-26 21:55:18] 2025-07-26 19:54:53,722 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745093151/log.45743349._030364.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0303
[2025-07-26 21:55:18] 2025-07-26 19:54:53,734 | INFO     | adding to output.list: log.45743349._030364.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/84/log.45743349._030364.job.log.tg
[2025-07-26 21:55:18] 2025-07-26 19:54:53,735 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 21:55:18] 2025-07-26 19:54:53,735 | INFO     | summary of transferred files:
[2025-07-26 21:55:18] 2025-07-26 19:54:53,735 | INFO     |  -- lfn=log.45743349._030364.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 21:55:18] 2025-07-26 19:54:53,735 | INFO     | stage-out finished correctly
[2025-07-26 21:55:18] 2025-07-26 19:54:56,065 | WARNING  | process 3713696 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 21:55:18] 2025-07-26 19:54:56,066 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745093151/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:55:18] 2025-07-26 19:54:56,101 | INFO     | number of running child processes to parent process 3713696: 1
[2025-07-26 21:55:18] 2025-07-26 19:54:56,101 | INFO     | maximum number of monitored processes: 6
[2025-07-26 21:55:18] 2025-07-26 19:54:56,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 21:55:18] 2025-07-26 19:54:56,951 | INFO     | job 6745093151 has state=finished
[2025-07-26 21:55:18] 2025-07-26 19:54:56,951 | INFO     | preparing for final server update for job 6745093151 in state='finished'
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | this job has now completed (state=finished)
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | log transfer has been attempted: DONE
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | job 6745093151 has finished - writing final server update
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | total number of processed events: 400 (read)
[2025-07-26 21:55:18] 2025-07-26 19:54:56,952 | INFO     | executing command: lscpu
[2025-07-26 21:55:18] 2025-07-26 19:54:56,969 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 21:55:18] 2025-07-26 19:54:58,604 | INFO     | monitor loop #319: job 0:6745093151 is in state 'finished'
[2025-07-26 21:55:18] 2025-07-26 19:54:58,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,387 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 21:55:18] 2025-07-26 19:54:59,389 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3530.43475
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745093151/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | INFO     | extracted standard info from prmon json
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 21:55:18] 2025-07-26 19:54:59,390 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | fitting pss+swap vs Time
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | sum of square deviations: 70364110.0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | sum of deviations: -6879235654.999999
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | mean x: 1753557720.0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | mean y: 2501242.573770492
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | -- intersect: 171441275790.05975
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | intersect: 171441275790.05975
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | chi2: 0.05871088645344741
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | -- intersect: 171441275790.05975
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | current memory leak: -97.77 B/s (using 61 data points, chi2=0.06)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | could have reported an average CPU frequency of 3797 MHz (6 samples)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,391 | INFO     | ..............................
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . Timing measurements:
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . get job = 0 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . initial setup = 1 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . payload setup = 3 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . stage-in = 0 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . payload execution = 4106 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . stage-out = 0 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | . log creation = 0 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,392 | INFO     | ..............................
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | 
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | job summary report
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | --------------------------------------------------
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | PanDA job id: 6745093151
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | task id: 45743349
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | errors: (none)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | pilot state: finished 
[2025-07-26 21:55:18] 2025-07-26 19:54:59,422 | INFO     | transexitcode: 0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | exeerrorcode: 0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | exeerrordiag: 
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | exitcode: 0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | exitmsg: OK
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | cpuconsumptiontime: 15501 s
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | nevents: 400
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | neventsw: 0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | pid: 3713696
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | pgrp: 3713696
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | corecount: 4
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | event service: False
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | sizes: {0: 2397478, 2: 2397740, 10: 2397768, 4113: 2423825, 4115: 2432829, 4118: 2432885, 4121: 2433207}
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | --------------------------------------------------
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | 
[2025-07-26 21:55:18] 2025-07-26 19:54:59,423 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | job 6745093151 has completed (purged errors)
[2025-07-26 21:55:18] 2025-07-26 19:54:59,437 | INFO     | overall cleanup function is called
[2025-07-26 21:55:18] 2025-07-26 19:55:00,089 | INFO     | PID=3707081 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 21:55:18] 2025-07-26 19:55:00,444 | INFO     | --- collectZombieJob: --- 10, [3713696]
[2025-07-26 21:55:18] 2025-07-26 19:55:00,444 | INFO     | zombie collector waiting for pid 3713696
[2025-07-26 21:55:18] 2025-07-26 19:55:00,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:55:18] 2025-07-26 19:55:00,444 | INFO     | collected zombie processes
[2025-07-26 21:55:18] 2025-07-26 19:55:00,444 | INFO     | will attempt to kill all subprocesses of pid=3713696
[2025-07-26 21:55:18] 2025-07-26 19:55:00,485 | INFO     | process IDs to be killed: [3713696] (in reverse order)
[2025-07-26 21:55:18] 2025-07-26 19:55:00,510 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:55:18] 2025-07-26 19:55:00,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:55:18] 2025-07-26 19:55:00,511 | INFO     | did not find any defunct processes belonging to 3713696
[2025-07-26 21:55:18] 2025-07-26 19:55:00,512 | INFO     | did not find any defunct processes belonging to 3713696
[2025-07-26 21:55:18] 2025-07-26 19:55:00,512 | INFO     | ready for new job
[2025-07-26 21:55:18] 2025-07-26 19:55:00,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | ***************************************
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | ***************************************
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | 
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | architecture information:
[2025-07-26 21:55:18] 2025-07-26 19:55:00,513 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:55:18] 2025-07-26 19:55:00,522 | INFO     | cat /etc/os-release:
[2025-07-26 21:55:18] NAME="CentOS Linux"
[2025-07-26 21:55:18] VERSION="7 (Core)"
[2025-07-26 21:55:18] ID="centos"
[2025-07-26 21:55:18] ID_LIKE="rhel fedora"
[2025-07-26 21:55:18] VERSION_ID="7"
[2025-07-26 21:55:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:55:18] ANSI_COLOR="0;31"
[2025-07-26 21:55:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:55:18] HOME_URL="https://www.centos.org/"
[2025-07-26 21:55:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:55:18] 
[2025-07-26 21:55:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:55:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:55:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:55:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:55:18] 
[2025-07-26 21:55:18] 2025-07-26 19:55:00,523 | INFO     | ***************************************
[2025-07-26 21:55:18] 2025-07-26 19:55:01,026 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-26 21:55:18] 2025-07-26 19:55:01,039 | INFO     | sufficient remaining disk space (365173932032 B)
[2025-07-26 21:55:18] 2025-07-26 19:55:01,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:55:18] 2025-07-26 19:55:01,039 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:55:18] 2025-07-26 19:55:01,039 | INFO     | update_server=False
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:55:18] 2025-07-26 19:55:01,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:55:18] 2025-07-26 19:55:01,082 | INFO     | all job control threads have been joined
[2025-07-26 21:55:18] 2025-07-26 19:55:01,108 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 21:55:18] 2025-07-26 19:55:01,108 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 21:55:18] 2025-07-26 19:55:01,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:55:18] 2025-07-26 19:55:01,109 | INFO     | will abort loop
[2025-07-26 21:55:18] 2025-07-26 19:55:01,361 | INFO     | all data control threads have been joined
[2025-07-26 21:55:18] 2025-07-26 19:55:01,640 | INFO     | all payload control threads have been joined
[2025-07-26 21:55:18] 2025-07-26 19:55:01,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:55:18] 2025-07-26 19:55:02,045 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,046 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,088 | INFO     | [job] control thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,099 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,114 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,122 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,367 | INFO     | [data] control thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,645 | INFO     | [payload] control thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:55:18] 2025-07-26 19:55:02,732 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:02,867 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:03,286 | INFO     | [job] validate thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:03,320 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:03,355 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:03,783 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:06,707 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:11,646 | INFO     | job.realtimelogging is not enabled
[2025-07-26 21:55:18] 2025-07-26 19:55:12,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:55:18] 2025-07-26 19:55:13,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140526809405248)>', '<ExcThread(monitor, started 140525852141312)>']
[2025-07-26 21:55:18] 2025-07-26 19:55:13,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:55:18] 2025-07-26 19:55:13,105 | INFO     | [monitor] control thread has ended
[2025-07-26 21:55:18] 2025-07-26 19:55:18,090 | INFO     | all workflow threads have been joined
[2025-07-26 21:55:18] 2025-07-26 19:55:18,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:55:18] 2025-07-26 19:55:18,091 | INFO     | traces error code: 0
[2025-07-26 21:55:18] 2025-07-26 19:55:18,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:55:18] 2025-07-26 19:55:18,139 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:55:18] 2025-07-26 19:55:18,142 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:55:18] 2025-07-26 19:55:18,144 [wrapper] pilotpid: 3707081
[2025-07-26 21:55:18] 2025-07-26 19:55:18,147 [wrapper] Pilot exit status: 0
[2025-07-26 21:55:18] 2025-07-26 19:55:18,154 [wrapper] pandaids: 6745093151
[2025-07-26 21:55:18] 2025-07-26 19:55:18,171 [wrapper] cleanup supervisor_pilot 3723524 3707082
[2025-07-26 21:55:18] 2025-07-26 19:55:18,173 [wrapper] Test setup, not cleaning
[2025-07-26 21:55:18] 2025-07-26 19:55:18,176 [wrapper] apfmon messages muted
[2025-07-26 21:55:18] 2025-07-26 19:55:18,178 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:55:18] 2025-07-26 19:55:18,181 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:55:18]  *** Error codes and diagnostics ***
[2025-07-26 21:55:18]     "exeErrorCode": 0,
[2025-07-26 21:55:18]     "exeErrorDiag": "",
[2025-07-26 21:55:18]     "pilotErrorCode": 0,
[2025-07-26 21:55:18]     "pilotErrorDiag": "",
[2025-07-26 21:55:18]  *** Listing of results directory ***
[2025-07-26 21:55:18] total 429072
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc    530466 Jul 26 03:05 pilot3.tar.gz
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc      5112 Jul 26 03:47 queuedata.json
[2025-07-26 21:55:18] -rwx------ 1 boinc boinc     36292 Jul 26 03:48 runpilot2-wrapper.sh
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc       100 Jul 26 20:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:55:18] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 20:45 run_atlas
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc       105 Jul 26 20:45 job.xml
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc 229174248 Jul 26 20:45 EVNT.45743347._001698.pool.root.1
[2025-07-26 21:55:18] drwxrwx--x 2 boinc boinc      4096 Jul 26 20:45 shared
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc    542900 Jul 26 20:45 input.tar.gz
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc     15095 Jul 26 20:45 start_atlas.sh
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc         0 Jul 26 20:45 boinc_setup_complete
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc      6524 Jul 26 20:45 init_data.xml
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc         0 Jul 26 20:45 boinc_lockfile
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc      2563 Jul 26 20:45 pandaJob.out
[2025-07-26 21:55:18] -rw------- 1 boinc boinc    980125 Jul 26 20:46 agis_schedconf.cvmfs.json
[2025-07-26 21:55:18] -rw------- 1 boinc boinc   1593052 Jul 26 20:46 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:55:18] drwx------ 4 boinc boinc      4096 Jul 26 20:46 pilot3
[2025-07-26 21:55:18] -rw------- 1 boinc boinc        95 Jul 26 21:54 pilot_heartbeat.json
[2025-07-26 21:55:18] -rw------- 1 boinc boinc 205024436 Jul 26 21:54 HITS.45743349._030364.pool.root.1
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc       529 Jul 26 21:54 boinc_task_state.xml
[2025-07-26 21:55:18] -rw------- 1 boinc boinc      1018 Jul 26 21:54 memory_monitor_summary.json
[2025-07-26 21:55:18] -rw------- 1 boinc boinc    231416 Jul 26 21:54 log.45743349._030364.job.log.tgz.1
[2025-07-26 21:55:18] -rw------- 1 boinc boinc      7749 Jul 26 21:54 heartbeat.json
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc      8192 Jul 26 21:55 boinc_mmap_file
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc        27 Jul 26 21:55 wrapper_checkpoint.txt
[2025-07-26 21:55:18] -rw------- 1 boinc boinc      4742 Jul 26 21:55 pilotlog.txt
[2025-07-26 21:55:18] -rw------- 1 boinc boinc    412865 Jul 26 21:55 log.45743349._030364.job.log.1
[2025-07-26 21:55:18] -rw------- 1 boinc boinc       357 Jul 26 21:55 output.list
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc       620 Jul 26 21:55 runtime_log
[2025-07-26 21:55:18] -rw------- 1 boinc boinc    665600 Jul 26 21:55 result.tar.gz
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc      8734 Jul 26 21:55 runtime_log.err
[2025-07-26 21:55:18] -rw------- 1 boinc boinc       658 Jul 26 21:55 Qk9NDm2Cjz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXvzKDmb4DVYn.diag
[2025-07-26 21:55:18] -rw-r--r-- 1 boinc boinc     21823 Jul 26 21:55 stderr.txt
[2025-07-26 21:55:18] HITS file was successfully produced:
[2025-07-26 21:55:18] -rw------- 1 boinc boinc 205024436 Jul 26 21:54 shared/HITS.pool.root.1
[2025-07-26 21:55:18]  *** Contents of shared directory: ***
[2025-07-26 21:55:18] total 425232
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc 229174248 Jul 26 20:45 ATLAS.root_0
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc    542900 Jul 26 20:45 input.tar.gz
[2025-07-26 21:55:18] -rw-r--r-- 2 boinc boinc     15095 Jul 26 20:45 start_atlas.sh
[2025-07-26 21:55:18] -rw------- 1 boinc boinc 205024436 Jul 26 21:54 HITS.pool.root.1
[2025-07-26 21:55:18] -rw------- 1 boinc boinc    665600 Jul 26 21:55 result.tar.gz
21:55:19 (3703387): run_atlas exited; CPU time 15512.796793
21:55:19 (3703387): called boinc_finish(0)

</stderr_txt>
]]>

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