Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:43:28 (3083389): wrapper (7.7.26015): starting
03:43:28 (3083389): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 03:43:28] Arguments: --nthreads 8
[2025-07-26 03:43:28] Threads: 8
[2025-07-26 03:43:28] Checking for CVMFS
[2025-07-26 03:43:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 03:43:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 03:43:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 03:43:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 03:43:28] 2.12.6.0 4167112 16655 344940 148768 0 620 25577758 32935936 19203 16776704 1 92312017 99.619 156621891 19674 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 03:43:28] CVMFS is ok
[2025-07-26 03:43:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 03:43:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 03:43:28] Further information can be found at the LHC@home message board.
[2025-07-26 03:43:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 03:43:28] Checking for apptainer binary...
[2025-07-26 03:43:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 03:43:28] Running /usr/bin/apptainer --version
[2025-07-26 03:43:28] apptainer version 1.4.1-1.el9
[2025-07-26 03:43:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 03:43:29] c7-16-8.aglt2.org
[2025-07-26 03:43:29] apptainer works
[2025-07-26 03:43:29] Set ATHENA_PROC_NUMBER=8
[2025-07-26 03:43:29] Set ATHENA_CORE_NUMBER=8
[2025-07-26 03:43:29] Starting ATLAS job with PandaID=6745093471
[2025-07-26 03:43:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 05:13:07]  *** The last 200 lines of the pilot log: ***
[2025-07-26 05:13:07]  scope=mc23_13p6TeV
[2025-07-26 05:13:07]  status=None
[2025-07-26 05:13:07]  status_code=0
[2025-07-26 05:13:07]  storage_token=
[2025-07-26 05:13:07]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745093471/log.45743349._030608.job.log.tgz.1
[2025-07-26 05:13:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/32/log.45743349._030608.job.log.tgz.1
[2025-07-26 05:13:07]  workdir=None
[2025-07-26 05:13:07] ]
[2025-07-26 05:13:07] 2025-07-26 09:12:21,770 | INFO     | transferring file log.45743349._030608.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745093471/log.45743349._030608.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 05:13:07] 2025-07-26 09:12:21,770 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745093471/log.45743349._030608.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._030608.job
[2025-07-26 05:13:07] 2025-07-26 09:12:21,799 | INFO     | adding to output.list: log.45743349._030608.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/32/log.45743349._030608.job.log.tg
[2025-07-26 05:13:07] 2025-07-26 09:12:21,800 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 05:13:07] 2025-07-26 09:12:21,800 | INFO     | summary of transferred files:
[2025-07-26 05:13:07] 2025-07-26 09:12:21,800 | INFO     |  -- lfn=log.45743349._030608.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 05:13:07] 2025-07-26 09:12:21,800 | INFO     | stage-out finished correctly
[2025-07-26 05:13:07] 2025-07-26 09:12:22,772 | INFO     | monitor loop #370: job 0:6745093471 is in state 'finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:22,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:13:07] 2025-07-26 09:12:24,950 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 05:13:07] 2025-07-26 09:12:25,277 | INFO     | monitor loop #371: job 0:6745093471 is in state 'finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:25,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:13:07] 2025-07-26 09:12:26,910 | INFO     | job 6745093471 has state=finished
[2025-07-26 05:13:07] 2025-07-26 09:12:26,910 | INFO     | preparing for final server update for job 6745093471 in state='finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:26,910 | INFO     | this job has now completed (state=finished)
[2025-07-26 05:13:07] 2025-07-26 09:12:26,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 05:13:07] 2025-07-26 09:12:26,911 | INFO     | log transfer has been attempted: DONE
[2025-07-26 05:13:07] 2025-07-26 09:12:26,911 | INFO     | job 6745093471 has finished - writing final server update
[2025-07-26 05:13:07] 2025-07-26 09:12:26,911 | INFO     | total number of processed events: 400 (read)
[2025-07-26 05:13:07] 2025-07-26 09:12:26,933 | INFO     | executing command: lscpu
[2025-07-26 05:13:07] 2025-07-26 09:12:27,022 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 05:13:07] 2025-07-26 09:12:27,782 | INFO     | monitor loop #372: job 0:6745093471 is in state 'finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:27,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:13:07] 2025-07-26 09:12:30,291 | INFO     | monitor loop #373: job 0:6745093471 is in state 'finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:30,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:13:07] 2025-07-26 09:12:32,794 | INFO     | monitor loop #374: job 0:6745093471 is in state 'finished'
[2025-07-26 05:13:07] 2025-07-26 09:12:32,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 05:13:07] 2025-07-26 09:12:34,721 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 05:13:07] 2025-07-26 09:12:34,726 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3100.1401458333316
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745093471/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | INFO     | extracted standard info from prmon json
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 05:13:07] 2025-07-26 09:12:34,739 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 05:13:07] 2025-07-26 09:12:34,742 | INFO     | fitting pss+swap vs Time
[2025-07-26 05:13:07] 2025-07-26 09:12:34,742 | INFO     | sum of square deviations: 158737860.0
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | sum of deviations: -6295578230.499999
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | mean x: 1753518570.5
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | mean y: 2238566.7125
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | -- intersect: 69547168422.87459
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | intersect: 69547168422.87459
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | chi2: 0.057765728761883475
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | -- intersect: 69547168422.87459
[2025-07-26 05:13:07] 2025-07-26 09:12:34,743 | INFO     | current memory leak: -39.66 B/s (using 80 data points, chi2=0.06)
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | could have reported an average CPU frequency of 3154 MHz (6 samples)
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | ..............................
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . Timing measurements:
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . get job = 0 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . initial setup = 2 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . payload setup = 8 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . stage-in = 0 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . payload execution = 5286 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . stage-out = 0 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | . log creation = 0 s
[2025-07-26 05:13:07] 2025-07-26 09:12:34,744 | INFO     | ..............................
[2025-07-26 05:13:07] 2025-07-26 09:12:35,221 | INFO     | 
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | job summary report
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | --------------------------------------------------
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | PanDA job id: 6745093471
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | task id: 45743349
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | errors: (none)
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 05:13:07] 2025-07-26 09:12:35,223 | INFO     | pilot state: finished 
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | transexitcode: 0
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | exeerrorcode: 0
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | exeerrordiag: 
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | exitcode: 0
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | exitmsg: OK
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | cpuconsumptiontime: 35148 s
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | nevents: 400
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | neventsw: 0
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | pid: 3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | pgrp: 3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | corecount: 8
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | event service: False
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | sizes: {0: 2397472, 6: 2397734, 11: 2397762, 5298: 2424199, 5300: 2433197, 5303: 2433253, 5313: 2433575}
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | --------------------------------------------------
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | 
[2025-07-26 05:13:07] 2025-07-26 09:12:35,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 05:13:07] 2025-07-26 09:12:35,262 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | job 6745093471 has completed (purged errors)
[2025-07-26 05:13:07] 2025-07-26 09:12:35,264 | INFO     | overall cleanup function is called
[2025-07-26 05:13:07] 2025-07-26 09:12:36,273 | INFO     | --- collectZombieJob: --- 10, [3094324]
[2025-07-26 05:13:07] 2025-07-26 09:12:36,273 | INFO     | zombie collector waiting for pid 3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:36,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 05:13:07] 2025-07-26 09:12:36,273 | INFO     | collected zombie processes
[2025-07-26 05:13:07] 2025-07-26 09:12:36,273 | INFO     | will attempt to kill all subprocesses of pid=3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:36,842 | INFO     | process IDs to be killed: [3094324] (in reverse order)
[2025-07-26 05:13:07] 2025-07-26 09:12:37,033 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 05:13:07] 2025-07-26 09:12:37,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 05:13:07] 2025-07-26 09:12:37,053 | INFO     | did not find any defunct processes belonging to 3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:37,072 | INFO     | did not find any defunct processes belonging to 3094324
[2025-07-26 05:13:07] 2025-07-26 09:12:37,073 | INFO     | ready for new job
[2025-07-26 05:13:07] 2025-07-26 09:12:37,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 05:13:07] 2025-07-26 09:12:37,074 | INFO     | ***************************************
[2025-07-26 05:13:07] 2025-07-26 09:12:37,074 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 05:13:07] 2025-07-26 09:12:37,074 | INFO     | ***************************************
[2025-07-26 05:13:07] 2025-07-26 09:12:37,074 | INFO     | 
[2025-07-26 05:13:07] 2025-07-26 09:12:37,079 | INFO     | architecture information:
[2025-07-26 05:13:07] 2025-07-26 09:12:37,080 | INFO     | executing command: cat /etc/os-release
[2025-07-26 05:13:07] 2025-07-26 09:12:37,100 | INFO     | cat /etc/os-release:
[2025-07-26 05:13:07] NAME="CentOS Linux"
[2025-07-26 05:13:07] VERSION="7 (Core)"
[2025-07-26 05:13:07] ID="centos"
[2025-07-26 05:13:07] ID_LIKE="rhel fedora"
[2025-07-26 05:13:07] VERSION_ID="7"
[2025-07-26 05:13:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 05:13:07] ANSI_COLOR="0;31"
[2025-07-26 05:13:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 05:13:07] HOME_URL="https://www.centos.org/"
[2025-07-26 05:13:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 05:13:07] 
[2025-07-26 05:13:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 05:13:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 05:13:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 05:13:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 05:13:07] 
[2025-07-26 05:13:07] 2025-07-26 09:12:37,100 | INFO     | ***************************************
[2025-07-26 05:13:07] 2025-07-26 09:12:37,604 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 05:13:07] 2025-07-26 09:12:37,664 | INFO     | sufficient remaining disk space (75672584192 B)
[2025-07-26 05:13:07] 2025-07-26 09:12:37,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 05:13:07] 2025-07-26 09:12:37,664 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 05:13:07] 2025-07-26 09:12:37,664 | INFO     | update_server=False
[2025-07-26 05:13:07] 2025-07-26 09:12:37,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 05:13:07] 2025-07-26 09:12:37,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 05:13:07] 2025-07-26 09:12:37,811 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 05:13:07] 2025-07-26 09:12:37,811 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 05:13:07] 2025-07-26 09:12:37,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:13:07] 2025-07-26 09:12:37,811 | INFO     | will abort loop
[2025-07-26 05:13:07] 2025-07-26 09:12:38,201 | INFO     | all data control threads have been joined
[2025-07-26 05:13:07] 2025-07-26 09:12:38,671 | INFO     | [job] retrieve thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:38,765 | INFO     | [payload] failed_post thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:38,774 | INFO     | all job control threads have been joined
[2025-07-26 05:13:07] 2025-07-26 09:12:38,817 | INFO     | [job] job monitor thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:38,909 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:38,934 | INFO     | [data] copytool_in thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:38,935 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,100 | INFO     | all payload control threads have been joined
[2025-07-26 05:13:07] 2025-07-26 09:12:39,207 | INFO     | [data] control thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,261 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,672 | INFO     | [data] copytool_out thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,780 | INFO     | [job] control thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:39,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:13:07] 2025-07-26 09:12:40,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 05:13:07] 2025-07-26 09:12:40,069 | INFO     | [job] validate thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:40,106 | INFO     | [payload] control thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:40,264 | INFO     | [payload] validate_post thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:40,835 | INFO     | [job] queue monitor thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:44,059 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 05:13:07] 2025-07-26 09:12:45,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256687159104)>', '<ExcThread(monitor, started 140255982253824)>']
[2025-07-26 05:13:07] 2025-07-26 09:12:50,482 | INFO     | all workflow threads have been joined
[2025-07-26 05:13:07] 2025-07-26 09:12:50,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 05:13:07] 2025-07-26 09:12:50,482 | INFO     | traces error code: 0
[2025-07-26 05:13:07] 2025-07-26 09:12:50,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | INFO     | PID=3087724 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | INFO     | .. there are 40 such processes running
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 05:13:07] 2025-07-26 09:13:07,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 05:13:07] 2025-07-26 09:13:07,206 | INFO     | [monitor] control thread has ended
[2025-07-26 05:13:07] 2025-07-26 09:13:07,303 [wrapper] ==== pilot stdout END ====
[2025-07-26 05:13:07] 2025-07-26 09:13:07,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 05:13:07] 2025-07-26 09:13:07,312 [wrapper] pilotpid: 3087724
[2025-07-26 05:13:07] 2025-07-26 09:13:07,316 [wrapper] Pilot exit status: 0
[2025-07-26 05:13:07] 2025-07-26 09:13:07,339 [wrapper] pandaids: 6745093471
[2025-07-26 05:13:07] 2025-07-26 09:13:07,468 [wrapper] cleanup supervisor_pilot 3409601 3087725
[2025-07-26 05:13:07] 2025-07-26 09:13:07,478 [wrapper] Test setup, not cleaning
[2025-07-26 05:13:07] 2025-07-26 09:13:07,483 [wrapper] apfmon messages muted
[2025-07-26 05:13:07] 2025-07-26 09:13:07,500 [wrapper] ==== wrapper stdout END ====
[2025-07-26 05:13:07] 2025-07-26 09:13:07,509 [wrapper] ==== wrapper stderr END ====
[2025-07-26 05:13:07]  *** Error codes and diagnostics ***
[2025-07-26 05:13:07]     "exeErrorCode": 0,
[2025-07-26 05:13:07]     "exeErrorDiag": "",
[2025-07-26 05:13:07]     "pilotErrorCode": 0,
[2025-07-26 05:13:07]     "pilotErrorDiag": "",
[2025-07-26 05:13:07]  *** Listing of results directory ***
[2025-07-26 05:13:07] total 434792
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 22:01 pilot3.tar.gz
[2025-07-26 05:13:07] -rwx------. 1 boincer umatlas     36292 Jul 25 22:02 runpilot2-wrapper.sh
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 22:02 queuedata.json
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas       100 Jul 26 03:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 05:13:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 03:43 run_atlas
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas       105 Jul 26 03:43 job.xml
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas 229693000 Jul 26 03:43 EVNT.45743347._001708.pool.root.1
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:43 start_atlas.sh
[2025-07-26 05:13:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 03:43 shared
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas    542887 Jul 26 03:43 input.tar.gz
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas         0 Jul 26 03:43 boinc_lockfile
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas      2561 Jul 26 03:43 pandaJob.out
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas    980017 Jul 26 03:43 agis_schedconf.cvmfs.json
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas   1593052 Jul 26 03:43 agis_ddmendpoints.agis.ALL.json
[2025-07-26 05:13:07] drwx------. 4 boincer umatlas      4096 Jul 26 03:43 pilot3
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas      6932 Jul 26 05:09 init_data.xml
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas 210037758 Jul 26 05:11 HITS.45743349._030608.pool.root.1
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas       529 Jul 26 05:11 boinc_task_state.xml
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas        95 Jul 26 05:12 pilot_heartbeat.json
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas      1030 Jul 26 05:12 memory_monitor_summary.json
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas    298411 Jul 26 05:12 log.45743349._030608.job.log.tgz.1
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas      7770 Jul 26 05:12 heartbeat.json
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas        27 Jul 26 05:13 wrapper_checkpoint.txt
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas       823 Jul 26 05:13 pilotlog.txt
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 05:13 boinc_mmap_file
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas    511339 Jul 26 05:13 log.45743349._030608.job.log.1
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas       357 Jul 26 05:13 output.list
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas       620 Jul 26 05:13 runtime_log
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas    829440 Jul 26 05:13 result.tar.gz
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 05:13 runtime_log.err
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas       652 Jul 26 05:13 K2PKDmZQjz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmnxzKDmQMgSSo.diag
[2025-07-26 05:13:07] -rw-r--r--. 1 boincer umatlas     21976 Jul 26 05:13 stderr.txt
[2025-07-26 05:13:07] HITS file was successfully produced:
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas 210037758 Jul 26 05:11 shared/HITS.pool.root.1
[2025-07-26 05:13:07]  *** Contents of shared directory: ***
[2025-07-26 05:13:07] total 430796
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas 229693000 Jul 26 03:43 ATLAS.root_0
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:43 start_atlas.sh
[2025-07-26 05:13:07] -rw-r--r--. 2 boincer umatlas    542887 Jul 26 03:43 input.tar.gz
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas 210037758 Jul 26 05:11 HITS.pool.root.1
[2025-07-26 05:13:07] -rw-------. 1 boincer umatlas    829440 Jul 26 05:13 result.tar.gz
05:13:09 (3083389): run_atlas exited; CPU time 35349.506812
05:13:09 (3083389): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN