Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:43:15 (595612): wrapper (7.7.26015): starting
03:43:15 (595612): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 03:43:15] Arguments: --nthreads 8
[2025-07-26 03:43:15] Threads: 8
[2025-07-26 03:43:15] Checking for CVMFS
[2025-07-26 03:43:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 03:43:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 03:43:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 03:43:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 03:43:15] 2.13.1.0 4026694 6449 90436 148768 3 188 20855619 40960000 12902 16776704 0 86802472 99.999 235286 60813 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 03:43:15] CVMFS is ok
[2025-07-26 03:43:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 03:43:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 03:43:15] Further information can be found at the LHC@home message board.
[2025-07-26 03:43:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 03:43:15] Checking for apptainer binary...
[2025-07-26 03:43:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 03:43:15] Running /usr/bin/apptainer --version
[2025-07-26 03:43:15] apptainer version 1.4.1-1.el9
[2025-07-26 03:43:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 03:43:15] c-208-38.aglt2.org
[2025-07-26 03:43:15] apptainer works
[2025-07-26 03:43:15] Set ATHENA_PROC_NUMBER=8
[2025-07-26 03:43:15] Set ATHENA_CORE_NUMBER=8
[2025-07-26 03:43:15] Starting ATLAS job with PandaID=6745093376
[2025-07-26 03:43:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 04:37:16]  *** The last 200 lines of the pilot log: ***
[2025-07-26 04:37:16] 2025-07-26 08:36:37,237 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/15/PanDA_Pilot-6745093376/log.45743349._030515.job.log.tgz.1 /tmp/boinchome/slots/15/log.45743349._030515.j
[2025-07-26 04:37:16] 2025-07-26 08:36:37,253 | INFO     | adding to output.list: log.45743349._030515.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/7f/log.45743349._030515.job.log.tg
[2025-07-26 04:37:16] 2025-07-26 08:36:37,253 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 04:37:16] 2025-07-26 08:36:37,254 | INFO     | summary of transferred files:
[2025-07-26 04:37:16] 2025-07-26 08:36:37,254 | INFO     |  -- lfn=log.45743349._030515.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 04:37:16] 2025-07-26 08:36:37,254 | INFO     | stage-out finished correctly
[2025-07-26 04:37:16] 2025-07-26 08:36:38,470 | INFO     | 3196s have passed since pilot start - server update state is 'RUNNING'
[2025-07-26 04:37:16] 2025-07-26 08:36:39,664 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | job 6745093376 has state=finished
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | preparing for final server update for job 6745093376 in state='finished'
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | this job has now completed (state=finished)
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | log transfer has been attempted: DONE
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | job 6745093376 has finished - writing final server update
[2025-07-26 04:37:16] 2025-07-26 08:36:39,718 | INFO     | total number of processed events: 400 (read)
[2025-07-26 04:37:16] 2025-07-26 08:36:39,719 | INFO     | executing command: lscpu
[2025-07-26 04:37:16] 2025-07-26 08:36:39,773 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 04:37:16] 2025-07-26 08:36:42,103 | WARNING  | process 608637 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 04:37:16] 2025-07-26 08:36:42,103 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6745093376/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 04:37:16] 2025-07-26 08:36:42,104 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6745093376/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 04:37:16] 2025-07-26 08:36:42,105 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3139654 B
[2025-07-26 04:37:16] 2025-07-26 08:36:42,105 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16022 B
[2025-07-26 04:37:16] 2025-07-26 08:36:42,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-07-26 04:37:16] 2025-07-26 08:36:42,221 | INFO     | PID=600985 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 04:37:16] 2025-07-26 08:36:42,221 | INFO     | .. there are 16 such processes running
[2025-07-26 04:37:16] 2025-07-26 08:36:43,179 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 04:37:16] 2025-07-26 08:36:43,187 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3709.5050390624992
[2025-07-26 04:37:16] 2025-07-26 08:36:43,195 | INFO     | sufficient remaining disk space (164829855744 B)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,196 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,198 | INFO     | size of work directory /tmp/boinchome/slots/15/PanDA_Pilot-6745093376: 3428658 B (within 2537553920 B limit)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,198 | INFO     | pfn file=/tmp/boinchome/slots/15/PanDA_Pilot-6745093376/HITS.45743349._030515.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,198 | INFO     | total size of present files: 0 B (workdir size: 3428658 B)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,198 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/15/PanDA_Pilot-6745093376/HITS.45743349._030515.pool.root.1 since it does not exist
[2025-07-26 04:37:16] 2025-07-26 08:36:43,205 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6745093376/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,206 | INFO     | extracted standard info from prmon json
[2025-07-26 04:37:16] 2025-07-26 08:36:43,206 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 04:37:16] 2025-07-26 08:36:43,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 04:37:16] 2025-07-26 08:36:43,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 04:37:16] 2025-07-26 08:36:43,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 04:37:16] 2025-07-26 08:36:43,207 | INFO     | fitting pss+swap vs Time
[2025-07-26 04:37:16] 2025-07-26 08:36:43,207 | INFO     | sum of square deviations: 28242390.0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | sum of deviations: -88424441.00000001
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | mean x: 1753517476.0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | mean y: 2530163.422222222
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | -- intersect: 5492639272.425778
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | intersect: 5492639272.425778
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | chi2: 0.0009633722890815431
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | -- intersect: 5492639272.425778
[2025-07-26 04:37:16] 2025-07-26 08:36:43,208 | INFO     | current memory leak: -3.13 B/s (using 45 data points, chi2=0.00)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | could have reported an average CPU frequency of 3751 MHz (5 samples)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | ..............................
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . Timing measurements:
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . get job = 0 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . initial setup = 2 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . payload setup = 5 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . stage-in = 0 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . payload execution = 3168 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . stage-out = 0 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | . log creation = 0 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,209 | INFO     | ..............................
[2025-07-26 04:37:16] 2025-07-26 08:36:43,608 | INFO     | number of running child processes to parent process 608637: 1
[2025-07-26 04:37:16] 2025-07-26 08:36:43,608 | INFO     | maximum number of monitored processes: 6
[2025-07-26 04:37:16] 2025-07-26 08:36:43,608 | INFO     | aborting job monitoring since job object (job id=6745093376) has expired
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | 
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | job summary report
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | --------------------------------------------------
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | PanDA job id: 6745093376
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | task id: 45743349
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | errors: (none)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 04:37:16] 2025-07-26 08:36:43,625 | INFO     | pilot state: finished 
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | transexitcode: 0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | exeerrorcode: 0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | exeerrordiag: 
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | exitcode: 0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | exitmsg: OK
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | cpuconsumptiontime: 23467 s
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | nevents: 400
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | neventsw: 0
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | pid: 608637
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | pgrp: 608637
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | corecount: 8
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | event service: False
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3177: 2423267, 3178: 2432322, 3181: 2432322, 3184: 2432704}
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | --------------------------------------------------
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | 
[2025-07-26 04:37:16] 2025-07-26 08:36:43,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-07-26 04:37:16] 2025-07-26 08:36:43,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | job 6745093376 has completed (purged errors)
[2025-07-26 04:37:16] 2025-07-26 08:36:43,645 | INFO     | overall cleanup function is called
[2025-07-26 04:37:16] 2025-07-26 08:36:44,653 | INFO     | --- collectZombieJob: --- 10, [608637]
[2025-07-26 04:37:16] 2025-07-26 08:36:44,653 | INFO     | zombie collector waiting for pid 608637
[2025-07-26 04:37:16] 2025-07-26 08:36:44,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 04:37:16] 2025-07-26 08:36:44,653 | INFO     | collected zombie processes
[2025-07-26 04:37:16] 2025-07-26 08:36:44,653 | INFO     | will attempt to kill all subprocesses of pid=608637
[2025-07-26 04:37:16] 2025-07-26 08:36:44,976 | INFO     | process IDs to be killed: [608637] (in reverse order)
[2025-07-26 04:37:16] 2025-07-26 08:36:45,090 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 04:37:16] 2025-07-26 08:36:45,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 04:37:16] 2025-07-26 08:36:45,105 | INFO     | did not find any defunct processes belonging to 608637
[2025-07-26 04:37:16] 2025-07-26 08:36:45,116 | INFO     | did not find any defunct processes belonging to 608637
[2025-07-26 04:37:16] 2025-07-26 08:36:45,116 | INFO     | ready for new job
[2025-07-26 04:37:16] 2025-07-26 08:36:45,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 04:37:16] 2025-07-26 08:36:45,117 | INFO     | ***************************************
[2025-07-26 04:37:16] 2025-07-26 08:36:45,117 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 04:37:16] 2025-07-26 08:36:45,117 | INFO     | ***************************************
[2025-07-26 04:37:16] 2025-07-26 08:36:45,117 | INFO     | 
[2025-07-26 04:37:16] 2025-07-26 08:36:45,121 | INFO     | architecture information:
[2025-07-26 04:37:16] 2025-07-26 08:36:45,122 | INFO     | executing command: cat /etc/os-release
[2025-07-26 04:37:16] 2025-07-26 08:36:45,134 | INFO     | cat /etc/os-release:
[2025-07-26 04:37:16] NAME="CentOS Linux"
[2025-07-26 04:37:16] VERSION="7 (Core)"
[2025-07-26 04:37:16] ID="centos"
[2025-07-26 04:37:16] ID_LIKE="rhel fedora"
[2025-07-26 04:37:16] VERSION_ID="7"
[2025-07-26 04:37:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 04:37:16] ANSI_COLOR="0;31"
[2025-07-26 04:37:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 04:37:16] HOME_URL="https://www.centos.org/"
[2025-07-26 04:37:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 04:37:16] 
[2025-07-26 04:37:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 04:37:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 04:37:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 04:37:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 04:37:16] 
[2025-07-26 04:37:16] 2025-07-26 08:36:45,134 | INFO     | ***************************************
[2025-07-26 04:37:16] 2025-07-26 08:36:45,637 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | INFO     | sufficient remaining disk space (164831952896 B)
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | INFO     | update_server=False
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 04:37:16] 2025-07-26 08:36:45,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 04:37:16] 2025-07-26 08:36:45,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 04:37:16] 2025-07-26 08:36:46,111 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 04:37:16] 2025-07-26 08:36:46,111 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 04:37:16] 2025-07-26 08:36:46,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 04:37:16] 2025-07-26 08:36:46,111 | INFO     | will abort loop
[2025-07-26 04:37:16] 2025-07-26 08:36:46,308 | INFO     | all payload control threads have been joined
[2025-07-26 04:37:16] 2025-07-26 08:36:46,321 | INFO     | all data control threads have been joined
[2025-07-26 04:37:16] 2025-07-26 08:36:46,657 | INFO     | [job] retrieve thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:46,722 | INFO     | [payload] failed_post thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,114 | INFO     | [job] job monitor thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,269 | INFO     | all job control threads have been joined
[2025-07-26 04:37:16] 2025-07-26 08:36:47,297 | INFO     | [payload] validate_post thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,314 | INFO     | [payload] control thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,326 | INFO     | [data] control thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,380 | INFO     | [data] copytool_in thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,654 | INFO     | [data] copytool_out thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,740 | INFO     | [job] validate thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,865 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:47,871 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:48,064 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:48,275 | INFO     | [job] control thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:48,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 04:37:16] 2025-07-26 08:36:49,282 | INFO     | [job] queue monitor thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:49,729 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:56,696 | INFO     | job.realtimelogging is not enabled
[2025-07-26 04:37:16] 2025-07-26 08:36:57,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 04:37:16] 2025-07-26 08:36:58,978 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663678809920)>', '<ExcThread(monitor, started 139663192872704)>']
[2025-07-26 04:37:16] 2025-07-26 08:37:04,003 | INFO     | all workflow threads have been joined
[2025-07-26 04:37:16] 2025-07-26 08:37:04,004 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 04:37:16] 2025-07-26 08:37:04,004 | INFO     | traces error code: 0
[2025-07-26 04:37:16] 2025-07-26 08:37:04,004 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 04:37:16] 2025-07-26 08:37:16,711 | INFO     | PID=600985 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | INFO     | .. there are 15 such processes running
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 04:37:16] 2025-07-26 08:37:16,712 | INFO     | [monitor] control thread has ended
[2025-07-26 04:37:16] 2025-07-26 08:37:16,786 [wrapper] ==== pilot stdout END ====
[2025-07-26 04:37:16] 2025-07-26 08:37:16,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 04:37:16] 2025-07-26 08:37:16,792 [wrapper] pilotpid: 600985
[2025-07-26 04:37:16] 2025-07-26 08:37:16,794 [wrapper] Pilot exit status: 0
[2025-07-26 04:37:16] 2025-07-26 08:37:16,803 [wrapper] pandaids: 6745093376
[2025-07-26 04:37:16] 2025-07-26 08:37:16,883 [wrapper] cleanup supervisor_pilot  890047 600986
[2025-07-26 04:37:16] 2025-07-26 08:37:16,886 [wrapper] Test setup, not cleaning
[2025-07-26 04:37:16] 2025-07-26 08:37:16,889 [wrapper] apfmon messages muted
[2025-07-26 04:37:16] 2025-07-26 08:37:16,892 [wrapper] ==== wrapper stdout END ====
[2025-07-26 04:37:16] 2025-07-26 08:37:16,895 [wrapper] ==== wrapper stderr END ====
[2025-07-26 04:37:16]  *** Error codes and diagnostics ***
[2025-07-26 04:37:16]     "exeErrorCode": 0,
[2025-07-26 04:37:16]     "exeErrorDiag": "",
[2025-07-26 04:37:16]     "pilotErrorCode": 0,
[2025-07-26 04:37:16]     "pilotErrorDiag": "",
[2025-07-26 04:37:16]  *** Listing of results directory ***
[2025-07-26 04:37:16] total 434140
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 21:05 pilot3.tar.gz
[2025-07-26 04:37:16] -rwx------. 1 boincer umatlas     36292 Jul 25 21:55 runpilot2-wrapper.sh
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 21:55 queuedata.json
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas       100 Jul 26 03:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 04:37:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 03:43 run_atlas
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas       105 Jul 26 03:43 job.xml
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas 232641371 Jul 26 03:43 EVNT.45743347._001704.pool.root.1
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:43 start_atlas.sh
[2025-07-26 04:37:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 03:43 shared
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 03:43 input.tar.gz
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas         0 Jul 26 03:43 boinc_lockfile
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 03:43 pandaJob.out
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas    980017 Jul 26 03:43 agis_schedconf.cvmfs.json
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas   1593052 Jul 26 03:43 agis_ddmendpoints.agis.ALL.json
[2025-07-26 04:37:16] drwx------. 4 boincer umatlas      4096 Jul 26 03:43 pilot3
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 04:29 init_data.xml
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas 206801315 Jul 26 04:36 HITS.45743349._030515.pool.root.1
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas       529 Jul 26 04:36 boinc_task_state.xml
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas        95 Jul 26 04:36 pilot_heartbeat.json
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas      1027 Jul 26 04:36 memory_monitor_summary.json
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas    287276 Jul 26 04:36 log.45743349._030515.job.log.tgz.1
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas      7766 Jul 26 04:36 heartbeat.json
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 04:37 boinc_mmap_file
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas        27 Jul 26 04:37 wrapper_checkpoint.txt
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas       822 Jul 26 04:37 pilotlog.txt
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas    333002 Jul 26 04:37 log.45743349._030515.job.log.1
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas       357 Jul 26 04:37 output.list
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas       620 Jul 26 04:37 runtime_log
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas    634880 Jul 26 04:37 result.tar.gz
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 04:37 runtime_log.err
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas       651 Jul 26 04:37 IunNDm4Ijz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmW0QLDmi9ZBBn.diag
[2025-07-26 04:37:16] -rw-r--r--. 1 boincer umatlas     22707 Jul 26 04:37 stderr.txt
[2025-07-26 04:37:16] HITS file was successfully produced:
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas 206801315 Jul 26 04:36 shared/HITS.pool.root.1
[2025-07-26 04:37:16]  *** Contents of shared directory: ***
[2025-07-26 04:37:16] total 430324
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas 232641371 Jul 26 03:43 ATLAS.root_0
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:43 start_atlas.sh
[2025-07-26 04:37:16] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 03:43 input.tar.gz
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas 206801315 Jul 26 04:36 HITS.pool.root.1
[2025-07-26 04:37:16] -rw-------. 1 boincer umatlas    634880 Jul 26 04:37 result.tar.gz
04:37:18 (595612): run_atlas exited; CPU time 23519.403554
04:37:18 (595612): called boinc_finish(0)

</stderr_txt>
]]>

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