Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:32:21 (862271): wrapper (7.7.26015): starting
03:32:21 (862271): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 03:32:21] Arguments: --nthreads 8
[2025-07-26 03:32:21] Threads: 8
[2025-07-26 03:32:21] Checking for CVMFS
[2025-07-26 03:32:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 03:32:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 03:32:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 03:32:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 03:32:21] 2.13.1.0 5065 261 85560 148768 2 188 1943388 40960000 4356 16776704 0 1724087 99.999 9278 49089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 03:32:21] CVMFS is ok
[2025-07-26 03:32:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 03:32:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 03:32:21] Further information can be found at the LHC@home message board.
[2025-07-26 03:32:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 03:32:21] Checking for apptainer binary...
[2025-07-26 03:32:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 03:32:21] Running /usr/bin/apptainer --version
[2025-07-26 03:32:21] apptainer version 1.4.1-1.el9
[2025-07-26 03:32:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 03:32:21] c-206-35.aglt2.org
[2025-07-26 03:32:21] apptainer works
[2025-07-26 03:32:21] Set ATHENA_PROC_NUMBER=8
[2025-07-26 03:32:21] Set ATHENA_CORE_NUMBER=8
[2025-07-26 03:32:21] Starting ATLAS job with PandaID=6745069213
[2025-07-26 03:32:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 04:57:07]  *** The last 200 lines of the pilot log: ***
[2025-07-26 04:57:07]  protocol_id=None
[2025-07-26 04:57:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 04:57:07]  replicas=None
[2025-07-26 04:57:07]  scope=mc23_13p6TeV
[2025-07-26 04:57:07]  status=None
[2025-07-26 04:57:07]  status_code=0
[2025-07-26 04:57:07]  storage_token=
[2025-07-26 04:57:07]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745069213/log.45743349._030141.job.log.tgz.1
[2025-07-26 04:57:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/76/log.45743349._030141.job.log.tgz.1
[2025-07-26 04:57:07]  workdir=None
[2025-07-26 04:57:07] ]
[2025-07-26 04:57:07] 2025-07-26 08:56:29,672 | INFO     | transferring file log.45743349._030141.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745069213/log.45743349._030141.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 04:57:07] 2025-07-26 08:56:29,672 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745069213/log.45743349._030141.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._030141.job
[2025-07-26 04:57:07] 2025-07-26 08:56:29,689 | INFO     | adding to output.list: log.45743349._030141.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/76/log.45743349._030141.job.log.tg
[2025-07-26 04:57:07] 2025-07-26 08:56:29,689 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 04:57:07] 2025-07-26 08:56:29,689 | INFO     | summary of transferred files:
[2025-07-26 04:57:07] 2025-07-26 08:56:29,690 | INFO     |  -- lfn=log.45743349._030141.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 04:57:07] 2025-07-26 08:56:29,690 | INFO     | stage-out finished correctly
[2025-07-26 04:57:07] 2025-07-26 08:56:29,811 | WARNING  | process 879970 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 04:57:07] 2025-07-26 08:56:29,812 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745069213/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 04:57:07] 2025-07-26 08:56:29,972 | INFO     | number of running child processes to parent process 879970: 1
[2025-07-26 04:57:07] 2025-07-26 08:56:29,973 | INFO     | maximum number of monitored processes: 6
[2025-07-26 04:57:07] 2025-07-26 08:56:31,362 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 04:57:07] 2025-07-26 08:56:31,730 | INFO     | job 6745069213 has state=finished
[2025-07-26 04:57:07] 2025-07-26 08:56:31,730 | INFO     | preparing for final server update for job 6745069213 in state='finished'
[2025-07-26 04:57:07] 2025-07-26 08:56:31,731 | INFO     | this job has now completed (state=finished)
[2025-07-26 04:57:07] 2025-07-26 08:56:31,731 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 04:57:07] 2025-07-26 08:56:31,731 | INFO     | log transfer has been attempted: DONE
[2025-07-26 04:57:07] 2025-07-26 08:56:31,731 | INFO     | job 6745069213 has finished - writing final server update
[2025-07-26 04:57:07] 2025-07-26 08:56:31,731 | INFO     | total number of processed events: 400 (read)
[2025-07-26 04:57:07] 2025-07-26 08:56:31,732 | INFO     | executing command: lscpu
[2025-07-26 04:57:07] 2025-07-26 08:56:31,770 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 04:57:07] 2025-07-26 08:56:32,475 | INFO     | monitor loop #366: job 0:6745069213 is in state 'finished'
[2025-07-26 04:57:07] 2025-07-26 08:56:32,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 04:57:07] 2025-07-26 08:56:34,829 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 04:57:07] 2025-07-26 08:56:34,832 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3170.559749999998
[2025-07-26 04:57:07] 2025-07-26 08:56:34,839 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745069213/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 04:57:07] 2025-07-26 08:56:34,839 | INFO     | extracted standard info from prmon json
[2025-07-26 04:57:07] 2025-07-26 08:56:34,839 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 04:57:07] 2025-07-26 08:56:34,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 04:57:07] 2025-07-26 08:56:34,840 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 04:57:07] 2025-07-26 08:56:34,840 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | fitting pss+swap vs Time
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | sum of square deviations: 136095575.0
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | sum of deviations: -1819812024.0000002
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | mean x: 1753517765.5
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | mean y: 2539779.6578947366
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | -- intersect: 23449831978.20669
[2025-07-26 04:57:07] 2025-07-26 08:56:34,841 | INFO     | intersect: 23449831978.20669
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | chi2: 0.0034163467608037397
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | -- intersect: 23449831978.20669
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | current memory leak: -13.37 B/s (using 76 data points, chi2=0.00)
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | could have reported an average CPU frequency of 3209 MHz (6 samples)
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | ..............................
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . Timing measurements:
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . get job = 0 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . initial setup = 2 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . payload setup = 5 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . stage-in = 0 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . payload execution = 5014 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . stage-out = 0 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | . log creation = 0 s
[2025-07-26 04:57:07] 2025-07-26 08:56:34,842 | INFO     | ..............................
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | 
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | job summary report
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | --------------------------------------------------
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | PanDA job id: 6745069213
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | task id: 45743349
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | errors: (none)
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | pilot state: finished 
[2025-07-26 04:57:07] 2025-07-26 08:56:35,212 | INFO     | transexitcode: 0
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | exeerrorcode: 0
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | exeerrordiag: 
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | exitcode: 0
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | exitmsg: OK
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | cpuconsumptiontime: 37768 s
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | nevents: 400
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | neventsw: 0
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | pid: 879970
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | pgrp: 879970
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | corecount: 8
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | event service: False
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | sizes: {0: 2397474, 4: 2397736, 11: 2397764, 5023: 2424184, 5024: 2424183, 5026: 2433237, 5027: 2433421, 5031: 2433615}
[2025-07-26 04:57:07] 2025-07-26 08:56:35,213 | INFO     | --------------------------------------------------
[2025-07-26 04:57:07] 2025-07-26 08:56:35,214 | INFO     | 
[2025-07-26 04:57:07] 2025-07-26 08:56:35,214 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 04:57:07] 2025-07-26 08:56:35,233 | INFO     | job 6745069213 has completed (purged errors)
[2025-07-26 04:57:07] 2025-07-26 08:56:35,234 | INFO     | overall cleanup function is called
[2025-07-26 04:57:07] 2025-07-26 08:56:36,242 | INFO     | --- collectZombieJob: --- 10, [879970]
[2025-07-26 04:57:07] 2025-07-26 08:56:36,242 | INFO     | zombie collector waiting for pid 879970
[2025-07-26 04:57:07] 2025-07-26 08:56:36,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 04:57:07] 2025-07-26 08:56:36,242 | INFO     | collected zombie processes
[2025-07-26 04:57:07] 2025-07-26 08:56:36,242 | INFO     | will attempt to kill all subprocesses of pid=879970
[2025-07-26 04:57:07] 2025-07-26 08:56:36,406 | INFO     | process IDs to be killed: [879970] (in reverse order)
[2025-07-26 04:57:07] 2025-07-26 08:56:36,469 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 04:57:07] 2025-07-26 08:56:36,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 04:57:07] 2025-07-26 08:56:36,477 | INFO     | did not find any defunct processes belonging to 879970
[2025-07-26 04:57:07] 2025-07-26 08:56:36,482 | INFO     | did not find any defunct processes belonging to 879970
[2025-07-26 04:57:07] 2025-07-26 08:56:36,482 | INFO     | ready for new job
[2025-07-26 04:57:07] 2025-07-26 08:56:36,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 04:57:07] 2025-07-26 08:56:36,483 | INFO     | ***************************************
[2025-07-26 04:57:07] 2025-07-26 08:56:36,483 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 04:57:07] 2025-07-26 08:56:36,483 | INFO     | ***************************************
[2025-07-26 04:57:07] 2025-07-26 08:56:36,483 | INFO     | 
[2025-07-26 04:57:07] 2025-07-26 08:56:36,486 | INFO     | architecture information:
[2025-07-26 04:57:07] 2025-07-26 08:56:36,486 | INFO     | executing command: cat /etc/os-release
[2025-07-26 04:57:07] 2025-07-26 08:56:36,498 | INFO     | cat /etc/os-release:
[2025-07-26 04:57:07] NAME="CentOS Linux"
[2025-07-26 04:57:07] VERSION="7 (Core)"
[2025-07-26 04:57:07] ID="centos"
[2025-07-26 04:57:07] ID_LIKE="rhel fedora"
[2025-07-26 04:57:07] VERSION_ID="7"
[2025-07-26 04:57:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 04:57:07] ANSI_COLOR="0;31"
[2025-07-26 04:57:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 04:57:07] HOME_URL="https://www.centos.org/"
[2025-07-26 04:57:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 04:57:07] 
[2025-07-26 04:57:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 04:57:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 04:57:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 04:57:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 04:57:07] 
[2025-07-26 04:57:07] 2025-07-26 08:56:36,498 | INFO     | ***************************************
[2025-07-26 04:57:07] 2025-07-26 08:56:37,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 04:57:07] 2025-07-26 08:56:37,016 | INFO     | sufficient remaining disk space (82684411904 B)
[2025-07-26 04:57:07] 2025-07-26 08:56:37,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 04:57:07] 2025-07-26 08:56:37,016 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 04:57:07] 2025-07-26 08:56:37,017 | INFO     | update_server=False
[2025-07-26 04:57:07] 2025-07-26 08:56:37,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 04:57:07] 2025-07-26 08:56:37,142 | INFO     | all data control threads have been joined
[2025-07-26 04:57:07] 2025-07-26 08:56:37,173 | INFO     | all job control threads have been joined
[2025-07-26 04:57:07] 2025-07-26 08:56:37,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 04:57:07] 2025-07-26 08:56:37,481 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 04:57:07] 2025-07-26 08:56:37,481 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 04:57:07] 2025-07-26 08:56:37,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 04:57:07] 2025-07-26 08:56:37,481 | INFO     | will abort loop
[2025-07-26 04:57:07] 2025-07-26 08:56:37,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 04:57:07] 2025-07-26 08:56:37,847 | INFO     | all payload control threads have been joined
[2025-07-26 04:57:07] 2025-07-26 08:56:38,022 | INFO     | [job] retrieve thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,143 | INFO     | [data] copytool_in thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,147 | INFO     | [data] control thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,178 | INFO     | [job] control thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,321 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,420 | INFO     | [payload] validate_post thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,487 | INFO     | [job] job monitor thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,853 | INFO     | [payload] control thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:38,939 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,273 | INFO     | [job] validate thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,296 | INFO     | [payload] failed_post thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,397 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,398 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,766 | INFO     | [data] copytool_out thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:39,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 04:57:07] 2025-07-26 08:56:40,913 | INFO     | [job] queue monitor thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:41,427 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 04:57:07] 2025-07-26 08:56:41,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035367348032)>', '<ExcThread(monitor, started 140035026302720)>']
[2025-07-26 04:57:07] 2025-07-26 08:56:47,009 | INFO     | all workflow threads have been joined
[2025-07-26 04:57:07] 2025-07-26 08:56:47,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 04:57:07] 2025-07-26 08:56:47,010 | INFO     | traces error code: 0
[2025-07-26 04:57:07] 2025-07-26 08:56:47,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 04:57:07] 2025-07-26 08:57:05,998 | INFO     | 5048s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 04:57:07] 2025-07-26 08:57:07,207 | INFO     | PID=867875 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 04:57:07] 2025-07-26 08:57:07,207 | INFO     | .. there are 7 such processes running
[2025-07-26 04:57:07] 2025-07-26 08:57:07,208 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 04:57:07] 2025-07-26 08:57:07,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 04:57:07] 2025-07-26 08:57:07,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 04:57:07] 2025-07-26 08:57:07,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 04:57:07] 2025-07-26 08:57:07,208 | INFO     | [monitor] control thread has ended
[2025-07-26 04:57:07] 2025-07-26 08:57:07,362 [wrapper] ==== pilot stdout END ====
[2025-07-26 04:57:07] 2025-07-26 08:57:07,365 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 04:57:07] 2025-07-26 08:57:07,367 [wrapper] pilotpid: 867875
[2025-07-26 04:57:07] 2025-07-26 08:57:07,369 [wrapper] Pilot exit status: 0
[2025-07-26 04:57:07] 2025-07-26 08:57:07,377 [wrapper] pandaids: 6745069213
[2025-07-26 04:57:07] 2025-07-26 08:57:07,421 [wrapper] cleanup supervisor_pilot 1057249 867876
[2025-07-26 04:57:07] 2025-07-26 08:57:07,423 [wrapper] Test setup, not cleaning
[2025-07-26 04:57:07] 2025-07-26 08:57:07,425 [wrapper] apfmon messages muted
[2025-07-26 04:57:07] 2025-07-26 08:57:07,427 [wrapper] ==== wrapper stdout END ====
[2025-07-26 04:57:07] 2025-07-26 08:57:07,429 [wrapper] ==== wrapper stderr END ====
[2025-07-26 04:57:07]  *** Error codes and diagnostics ***
[2025-07-26 04:57:07]     "exeErrorCode": 0,
[2025-07-26 04:57:07]     "exeErrorDiag": "",
[2025-07-26 04:57:07]     "pilotErrorCode": 0,
[2025-07-26 04:57:07]     "pilotErrorDiag": "",
[2025-07-26 04:57:07]  *** Listing of results directory ***
[2025-07-26 04:57:07] total 351492
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 21:05 pilot3.tar.gz
[2025-07-26 04:57:07] -rwx------. 1 boincer umatlas     36292 Jul 25 21:35 runpilot2-wrapper.sh
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 21:35 queuedata.json
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas       100 Jul 26 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 04:57:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 03:32 run_atlas
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas       105 Jul 26 03:32 job.xml
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas 146407867 Jul 26 03:32 EVNT.45743347._001687.pool.root.1
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:32 start_atlas.sh
[2025-07-26 04:57:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 03:32 shared
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 03:32 input.tar.gz
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas         0 Jul 26 03:32 boinc_lockfile
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 03:32 pandaJob.out
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas    980017 Jul 26 03:32 agis_schedconf.cvmfs.json
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas   1593052 Jul 26 03:32 agis_ddmendpoints.agis.ALL.json
[2025-07-26 04:57:07] drwx------. 4 boincer umatlas      4096 Jul 26 03:32 pilot3
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas      6897 Jul 26 04:54 init_data.xml
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas 208040581 Jul 26 04:56 HITS.45743349._030141.pool.root.1
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas       529 Jul 26 04:56 boinc_task_state.xml
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas      1024 Jul 26 04:56 memory_monitor_summary.json
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas    312116 Jul 26 04:56 log.45743349._030141.job.log.tgz.1
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas      7767 Jul 26 04:56 heartbeat.json
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas        27 Jul 26 04:57 wrapper_checkpoint.txt
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 04:57 boinc_mmap_file
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas        95 Jul 26 04:57 pilot_heartbeat.json
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas       936 Jul 26 04:57 pilotlog.txt
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas    487232 Jul 26 04:57 log.45743349._030141.job.log.1
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas       357 Jul 26 04:57 output.list
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas       620 Jul 26 04:57 runtime_log
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas    819200 Jul 26 04:57 result.tar.gz
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 04:57 runtime_log.err
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas       651 Jul 26 04:57 Pe6MDmgziz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGxQLDmsflBym.diag
[2025-07-26 04:57:07] -rw-r--r--. 1 boincer umatlas     21835 Jul 26 04:57 stderr.txt
[2025-07-26 04:57:07] HITS file was successfully produced:
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas 208040581 Jul 26 04:56 shared/HITS.pool.root.1
[2025-07-26 04:57:07]  *** Contents of shared directory: ***
[2025-07-26 04:57:07] total 347504
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas 146407867 Jul 26 03:32 ATLAS.root_0
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 03:32 start_atlas.sh
[2025-07-26 04:57:07] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 03:32 input.tar.gz
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas 208040581 Jul 26 04:56 HITS.pool.root.1
[2025-07-26 04:57:07] -rw-------. 1 boincer umatlas    819200 Jul 26 04:57 result.tar.gz
04:57:09 (862271): run_atlas exited; CPU time 37841.892385
04:57:09 (862271): called boinc_finish(0)

</stderr_txt>
]]>

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